Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

6722218 .. 6723276

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCTTCCAATTACTTGCTTGTATGTCTTATTGGAGTAGTGGCTTTCACTACCGCTTCCACTCTTGCTGATCACCATGATCATCACAAACCACCCGTTCACAAGCCTCCCGTTGTAGAAATCTCTCACCTCCAAAAGCCACCAACCTCACATGATCAACCCCCTAAGGTTAAGGGGGAGAAGCCACCACCCGAGAAAAAGCCACCCCATGAACACCGTTTGTTGGAGTCAGATGGAAGAACTTTTAAGGGAGAGAAACCACCACAAGAGCATAACGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCACCTCATGAACATCGCTTGTTAGAGACTGATGACAAACCTTCCAAAGGAGAGAAGTCTCCAAAGGAGCACAATGAACCTCGTAAAGGAGAGAAGCCACCACCTAATCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGAATCCACCGAGAGAGCACAATGGGCCTCGTAAGGGAGAAAAGCCACCACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGAAAACCTACTAAGGGAGAGGATCCACCAAGAGAGCACAATGAACCTCGTAAGGGAGAAAAGCCACCACCAGAGCATAAACCGGAAAATCCAGGGGATCAACCTCACAAGGGTCATGAGAAGCCACCACCAGAGCACAAGCCTCCCCATGAACAAAACGTAGGACGTCGTTTGTTGGAGTCTTCTTCCTTGGAGTTGGTTGGTAAACCTCCCAAAGGAAAGAAGCCACCCCCAAAGCACAAGCCACCAACCACACTTGATAATAAAGATGTAGATCATAAGCAATTCCCAGACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCTCAGCATGATCGTCACCTAGGAGAAAATGTGGAAGAGGATGCAAAAAACCCATCGCAGACGTCACATCGGAAATTAAAACAGCCTCCAAGTACTCTTGCAAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCATAAACCCCCATCTTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

352

Amino Acids

39.58

Weight (kDa)

9.27

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	745, 965
AciI	CCGC	3 cut(s)	54, 445, 559
AclWI	GGATC	3 cut(s)	593, 606, 681
AcyI	GRCGYC	2 cut(s)	742, 962
AfaI	GTAC	1 cut(s)	994
AjnI	CCWGG	1 cut(s)	667
Alw21I	GWGCWC	6 cut(s)	312, 387, 501, 540, 615, 714
Alw26I	GTCTC	2 cut(s)	335, 378
AlwI	GGATC	3 cut(s)	593, 606, 681
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	506
AspA2I	CCTAGG	1 cut(s)	919
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	65, 119, 908
AvaI	CYCGRG	1 cut(s)	191
AvrII	CCTAGG	1 cut(s)	919
AxyI	CCTNAGG	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	6 cut(s)	312, 387, 501, 540, 615, 714
BbvCI	CCTCAGC	1 cut(s)	903
BccI	CCATC	5 cut(s)	227, 455, 569, 961, 1054
BciT130I	CCWGG	1 cut(s)	669
BclI	TGATCA	3 cut(s)	70, 79, 154
BcoDI	GTCTC	2 cut(s)	335, 378
BfaI	CTAG	1 cut(s)	920
BlnI	CCTAGG	1 cut(s)	919
BmcAI	AGTACT	1 cut(s)	994
Bme1390I	CCNGG	1 cut(s)	669
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	931
BpiI	GAAGAC	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	849
BsaHI	GRCGYC	2 cut(s)	742, 962
BsaJI	CCNNGG	4 cut(s)	474, 668, 765, 919
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	2 cut(s)	915, 945
Bse21I	CCTNAGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	4 cut(s)	474, 668, 765, 919
BseGI	GGATG	1 cut(s)	946
BseJI	GATNNNNATC	1 cut(s)	849
BseMII	CTCAG	1 cut(s)	917
BshFI	GGCC	1 cut(s)	508
BsiHKAI	GWGCWC	6 cut(s)	312, 387, 501, 540, 615, 714
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	659
BsmAI	GTCTC	2 cut(s)	335, 378
BsnI	GGCC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	6 cut(s)	312, 387, 501, 540, 615, 714
Bsp143I	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
BspACI	CCGC	3 cut(s)	54, 445, 559
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	1 cut(s)	916
BspHI	TCATGA	4 cut(s)	322, 436, 550, 691
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	3 cut(s)	593, 606, 681
BssECI	CCNNGG	4 cut(s)	474, 668, 765, 919
BssMI	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
BssNI	GRCGYC	2 cut(s)	742, 962
BssT1I	CCWWGG	3 cut(s)	474, 765, 919
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	930
BstACI	GRCGYC	2 cut(s)	742, 962
BstDEI	CTNAG	3 cut(s)	165, 588, 903
BstENI	CCTNNNNNAGG	3 cut(s)	360, 399, 789
BstF5I	GGATG	1 cut(s)	946
BstKTI	GATC	7 cut(s)	73, 82, 157, 601, 676, 853, 913
BstMAI	GTCTC	2 cut(s)	335, 378
BstMBI	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 505, 904
BstNI	CCWGG	1 cut(s)	669
BstSCI	CCNGG	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	508
BtgZI	GCGATG	2 cut(s)	314, 939
BtsCI	GGATG	1 cut(s)	946
CciI	TCATGA	4 cut(s)	322, 436, 550, 691
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	993
CviAII	CATG	9 cut(s)	77, 152, 209, 323, 437, 551, 692, 725, 908
CviQI	GTAC	1 cut(s)	993
DdeI	CTNAG	3 cut(s)	165, 588, 903
DpnI	GATC	7 cut(s)	72, 81, 156, 600, 675, 852, 912
DpnII	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
Eco130I	CCWWGG	3 cut(s)	474, 765, 919
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	3 cut(s)	360, 399, 789
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	3 cut(s)	474, 765, 919
ErhI	CCWWGG	3 cut(s)	474, 765, 919
FaeI	CATG	9 cut(s)	80, 155, 212, 326, 440, 554, 695, 728, 911
FatI	CATG	9 cut(s)	76, 151, 208, 322, 436, 550, 691, 724, 907
FbaI	TGATCA	3 cut(s)	70, 79, 154
FokI	GGATG	1 cut(s)	953
FspBI	CTAG	1 cut(s)	920
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	1 cut(s)	659
Hin1I	GRCGYC	2 cut(s)	742, 962
Hin1II	CATG	9 cut(s)	80, 155, 212, 326, 440, 554, 695, 728, 911
HinfI	GANTC	3 cut(s)	227, 484, 755
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	3 cut(s)	65, 119, 908
Hpy166II	GTNNAC	2 cut(s)	100, 782
Hpy188I	TCNGA	3 cut(s)	232, 972, 1054
Hpy188III	TCNNGA	4 cut(s)	323, 437, 551, 692
Hpy8I	GTNNAC	2 cut(s)	100, 782
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	1 cut(s)	366
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	3 cut(s)	735, 742, 962
HpyCH4V	TGCA	2 cut(s)	944, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 505, 904
HpyF3I	CTNAG	3 cut(s)	165, 588, 903
HpySE526I	ACGT	3 cut(s)	735, 742, 962
Hsp92I	GRCGYC	2 cut(s)	742, 962
Hsp92II	CATG	9 cut(s)	80, 155, 212, 326, 440, 554, 695, 728, 911
Ksp22I	TGATCA	3 cut(s)	70, 79, 154
Kzo9I	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	8 cut(s)	318, 546, 654, 660, 672, 681, 720, 879
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	1 cut(s)	920
MaeII	ACGT	3 cut(s)	735, 742, 962
MaeIII	GTNAC	2 cut(s)	914, 963
MalI	GATC	7 cut(s)	72, 81, 156, 600, 675, 852, 912
MboI	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
MboII	GAAGA	5 cut(s)	249, 750, 753, 947, 1041
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	6 cut(s)	312, 387, 501, 540, 615, 714
MluCI	AATT	3 cut(s)	10, 860, 974
MlyI	GAGTC	2 cut(s)	236, 764
MmeI	TCCRAC	3 cut(s)	204, 732, 1037
MseI	TTAA	3 cut(s)	171, 246, 977
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	3 cut(s)	277, 505, 904
NdeII	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
NlaIII	CATG	9 cut(s)	80, 155, 212, 326, 440, 554, 695, 728, 911
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	914, 963
PagI	TCATGA	4 cut(s)	322, 436, 550, 691
PfeI	GAWTC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	235, 763
PpsI	GAGTC	2 cut(s)	235, 763
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	1 cut(s)	994
RsaNI	GTAC	1 cut(s)	993
SaqAI	TTAA	3 cut(s)	171, 246, 977
Sau3AI	GATC	7 cut(s)	70, 79, 154, 598, 673, 850, 910
Sau96I	GGNCC	1 cut(s)	506
ScaI	AGTACT	1 cut(s)	994
SchI	GAGTC	2 cut(s)	236, 764
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	6 cut(s)	312, 387, 501, 540, 615, 714
SfaNI	GCATC	1 cut(s)	931
Sse9I	AATT	3 cut(s)	10, 860, 974
SsiI	CCGC	3 cut(s)	54, 445, 559
SspMI	CTAG	1 cut(s)	920
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	3 cut(s)	474, 765, 919
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	3 cut(s)	738, 745, 965
TasI	AATT	3 cut(s)	10, 860, 974
TatI	WGTACW	1 cut(s)	992
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	3 cut(s)	171, 246, 977
Tru9I	TTAA	3 cut(s)	171, 246, 977
TseFI	GTSAC	2 cut(s)	914, 963
Tsp45I	GTSAC	2 cut(s)	914, 963
TspDTI	ATGAA	7 cut(s)	225, 339, 405, 453, 567, 633, 741
XagI	CCTNNNNNAGG	3 cut(s)	360, 399, 789
XmaJI	CCTAGG	1 cut(s)	919
XspI	CTAG	1 cut(s)	920
ZraI	GACGTC	2 cut(s)	743, 963
ZrmI	AGTACT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.