Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

3165024 .. 3166274

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03502.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGCCTTCCAATTATCTGCTTCTATTTCTTCTTGCAGTGGTGGTTTTCACTACCACTACTCCCACTCTTGCTGATCAGCACGATGATCACCGCAAACCACCGATTCACAAGCCTCCTACCCATCCCTCAGGCCACCACAAACCACCCATTCACAAGCCTCCCATGGTCGAAGTCTCTCATCTGCCGAAGTCACCCCAACCCCCTAAACATAAGAACGAGCCACTCCCCGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCGCCACCAGAGCACAAGCCACCTCATGAGCACCGGTTGTTAGAGACAGATGGAAAACCTTCTAAGGGCGAGAAGACACCACAACATCACAATGAGCCTAAGAAGGGAGAGAAGCCACCACCGGAGCACAAACAAGGTGAGCAACCTCACAAGGGTCATGAGCACAAACCTCCCCATGAACAAAACGTTGGACGTCGTTTGTTAGAGTCTTCTTCCTCAGAGTTGGATGGTAAGCCACCAAAGGGTAAGAATTCACCACCGAAACACAAACCACCTCATGAACATCAATTGTTGGAGTTGGATGGAAAACCCTCCAAGGGAGAGAAGCCACCACCAAAGCATAACCCACCTCATGAACACCAGTTGATGGAGTTAGATGGAAAACCATCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAGCATAAGGGAGAGAAGCCACCACAGAAGCACAAGCCACCTCATCATGAACACCGCTTATTAGAGACTGATGGGAAACCATCCAAGGGAGAGAAGCCACCACAACATCACAATGAGCCCAAGAAGGGAGAGAAACCACCACCGGAGCACAAACCAGGACATCCAGGTAATGAACCTCACAAGGGTGAGAAGTCACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCATTTGTTAGAGTCTTCTTCCACCGAGTTAGATGGTAAGTCTCCTAAAGGAAAGAAGTCACCCCCAAAACACAAGCCGCCAACCCTACTGGAAAAAAATGATGATCACAAGCCATACCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGCATCCACCACATCACGATCGTCACCTCGCAGAGAATGCAAAGGAGGATGATAGACACCCAAAACACAAGCCACCCCGGAAATTGAAACCTCCAAGTACTCTTGCAAAGAAGCCTCCGACTTCCCCTCACAAGCCAGCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

417

Amino Acids

46.84

Weight (kDa)

9.62

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	649
AciI	CCGC	4 cut(s)	91, 284, 757, 1016
AclI	AACGTT	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	532
AcyI	GRCGYC	2 cut(s)	475, 937
AfaI	GTAC	1 cut(s)	1186
AgeI	ACCGGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	1174
AjnI	CCWGG	2 cut(s)	856, 865
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AleI	CACNNNNGTG	1 cut(s)	885
AluBI	AGCT	1 cut(s)	1226
AluI	AGCT	1 cut(s)	1226
Alw21I	GWGCWC	7 cut(s)	234, 297, 315, 411, 447, 699, 852
Alw26I	GTCTC	4 cut(s)	178, 320, 761, 984
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	532
AsiGI	ACCGGT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	340
AsuC2I	CCSGG	2 cut(s)	1058, 1165
AsuHPI	GGTGA	8 cut(s)	80, 183, 431, 528, 888, 899, 990, 1103
AvaI	CYCGRG	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	822
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	3 cut(s)	362, 483, 945
Bbv12I	GWGCWC	7 cut(s)	234, 297, 315, 411, 447, 699, 852
BciT130I	CCWGG	2 cut(s)	858, 867
BclI	TGATCA	4 cut(s)	73, 85, 253, 1042
BcnI	CCSGG	2 cut(s)	1058, 1165
BcoDI	GTCTC	4 cut(s)	178, 320, 761, 984
BisI	GCNGC	2 cut(s)	284, 1016
BlsI	GCNGC	2 cut(s)	285, 1017
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	4 cut(s)	858, 867, 1058, 1165
BmeT110I	CYCGRG	1 cut(s)	227
BmrFI	CCNGG	4 cut(s)	858, 867, 1058, 1165
BmsI	GCATC	1 cut(s)	1099
BpiI	GAAGAC	3 cut(s)	362, 483, 945
BpuMI	CCSGG	2 cut(s)	1058, 1165
BsaHI	GRCGYC	2 cut(s)	475, 937
BsaJI	CCNNGG	5 cut(s)	162, 597, 672, 786, 1163
BsaWI	WCCGGW	4 cut(s)	315, 403, 844, 932
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse118I	RCCGGY	1 cut(s)	315
Bse1I	ACTGG	2 cut(s)	643, 1032
Bse21I	CCTNAGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	858, 867
BseDI	CCNNGG	5 cut(s)	162, 597, 672, 786, 1163
BseGI	GGATG	8 cut(s)	121, 514, 589, 668, 782, 862, 1090, 1141
BseMII	CTCAG	2 cut(s)	141, 513
BseNI	ACTGG	2 cut(s)	643, 1032
Bsh1285I	CGRYCG	1 cut(s)	1108
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	1108
BsiHKAI	GWGCWC	7 cut(s)	234, 297, 315, 411, 447, 699, 852
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	316, 404, 845, 933, 1058, 1165
BsmAI	GTCTC	4 cut(s)	178, 320, 761, 984
BsmI	GAATGC	1 cut(s)	1129
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	8 cut(s)	234, 297, 315, 411, 447, 699, 822, 852
Bsp143I	GATC	5 cut(s)	73, 85, 253, 1042, 1105
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	4 cut(s)	91, 284, 757, 1016
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	140, 512
BspHI	TCATGA	6 cut(s)	307, 439, 559, 634, 748, 919
BsrFI	RCCGGY	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	643, 1032
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	5 cut(s)	162, 597, 672, 786, 1163
BssMI	GATC	5 cut(s)	73, 85, 253, 1042, 1105
BssNI	GRCGYC	2 cut(s)	475, 937
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	4 cut(s)	162, 597, 672, 786
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	858, 867
BstACI	GRCGYC	2 cut(s)	475, 937
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstC8I	GCNNGC	1 cut(s)	1224
BstDEI	CTNAG	4 cut(s)	127, 345, 381, 499
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	8 cut(s)	121, 514, 589, 668, 782, 862, 1090, 1141
BstKTI	GATC	5 cut(s)	76, 88, 256, 1045, 1108
BstMAI	GTCTC	4 cut(s)	178, 320, 761, 984
BstMBI	GATC	5 cut(s)	73, 85, 253, 1042, 1105
BstMCI	CGRYCG	1 cut(s)	1108
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 703, 1124
BstNI	CCWGG	2 cut(s)	858, 867
BstSCI	CCNGG	4 cut(s)	856, 865, 1056, 1163
BstV2I	GAAGAC	3 cut(s)	362, 483, 945
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	8 cut(s)	121, 514, 589, 668, 782, 862, 1090, 1141
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	1224
CciI	TCATGA	6 cut(s)	307, 439, 559, 634, 748, 919
Cfr10I	RCCGGY	1 cut(s)	315
CseI	GACGC	1 cut(s)	945
Csp6I	GTAC	1 cut(s)	1185
CspAI	ACCGGT	1 cut(s)	315
CviAII	CATG	8 cut(s)	163, 308, 440, 458, 560, 635, 749, 920
CviQI	GTAC	1 cut(s)	1185
DdeI	CTNAG	4 cut(s)	127, 345, 381, 499
DpnI	GATC	5 cut(s)	75, 87, 255, 1044, 1107
DpnII	GATC	5 cut(s)	73, 85, 253, 1042, 1105
Eco130I	CCWWGG	4 cut(s)	162, 597, 672, 786
Eco24I	GRGCYC	1 cut(s)	822
Eco81I	CCTNAGG	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	856, 865
EcoT14I	CCWWGG	4 cut(s)	162, 597, 672, 786
EcoT38I	GRGCYC	1 cut(s)	822
ErhI	CCWWGG	4 cut(s)	162, 597, 672, 786
FaeI	CATG	8 cut(s)	166, 311, 443, 461, 563, 638, 752, 923
FatI	CATG	8 cut(s)	162, 307, 439, 457, 559, 634, 748, 919
FbaI	TGATCA	4 cut(s)	73, 85, 253, 1042
Fnu4HI	GCNGC	2 cut(s)	284, 1016
FokI	GGATG	8 cut(s)	108, 521, 596, 655, 769, 849, 1077, 1148
FriOI	GRGCYC	1 cut(s)	822
Fsp4HI	GCNGC	2 cut(s)	284, 1016
GluI	GCNGC	2 cut(s)	284, 1016
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	6 cut(s)	316, 404, 845, 933, 1058, 1165
HgaI	GACGC	1 cut(s)	945
Hin1I	GRCGYC	2 cut(s)	475, 937
Hin1II	CATG	8 cut(s)	166, 311, 443, 461, 563, 638, 752, 923
HinfI	GANTC	3 cut(s)	103, 488, 950
HpaII	CCGG	6 cut(s)	316, 404, 845, 933, 1058, 1165
HphI	GGTGA	8 cut(s)	80, 183, 431, 528, 888, 899, 990, 1103
Hpy188I	TCNGA	2 cut(s)	502, 1206
Hpy188III	TCNNGA	8 cut(s)	251, 308, 440, 560, 635, 749, 920, 1103
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	4 cut(s)	15, 351, 379, 820
HpyCH4IV	ACGT	2 cut(s)	468, 475
HpyCH4V	TGCA	3 cut(s)	35, 1127, 1193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 703, 1124
HpyF3I	CTNAG	4 cut(s)	127, 345, 381, 499
HpySE526I	ACGT	2 cut(s)	468, 475
Hsp92I	GRCGYC	2 cut(s)	475, 937
Hsp92II	CATG	8 cut(s)	166, 311, 443, 461, 563, 638, 752, 923
Ksp22I	TGATCA	4 cut(s)	73, 85, 253, 1042
Kzo9I	GATC	5 cut(s)	73, 85, 253, 1042, 1105
LmnI	GCTCC	2 cut(s)	406, 847
LweI	GCATC	1 cut(s)	1099
MaeII	ACGT	2 cut(s)	468, 475
MaeIII	GTNAC	4 cut(s)	189, 894, 996, 1109
MalI	GATC	5 cut(s)	75, 87, 255, 1044, 1107
MboI	GATC	5 cut(s)	73, 85, 253, 1042, 1105
MboII	GAAGA	6 cut(s)	20, 367, 483, 486, 945, 948
MfeI	CAATTG	1 cut(s)	569
MhlI	GDGCHC	8 cut(s)	234, 297, 315, 411, 447, 699, 822, 852
MluCI	AATT	4 cut(s)	10, 532, 569, 1169
MlyI	GAGTC	2 cut(s)	497, 959
MmeI	TCCRAC	5 cut(s)	451, 486, 555, 561, 1229
MroXI	GAANNNNTTC	1 cut(s)	340
MslI	CAYNNNNRTG	3 cut(s)	372, 813, 885
MspI	CCGG	6 cut(s)	316, 404, 845, 933, 1058, 1165
MspR9I	CCNGG	4 cut(s)	858, 867, 1058, 1165
MunI	CAATTG	1 cut(s)	569
Mva1269I	GAATGC	1 cut(s)	1129
MvaI	CCWGG	2 cut(s)	858, 867
MwoI	GCNNNNNNNGC	3 cut(s)	292, 703, 1124
NciI	CCSGG	2 cut(s)	1058, 1165
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	73, 85, 253, 1042, 1105
NlaIII	CATG	8 cut(s)	166, 311, 443, 461, 563, 638, 752, 923
NmuCI	GTSAC	4 cut(s)	189, 894, 996, 1109
OliI	CACNNNNGTG	1 cut(s)	885
PagI	TCATGA	6 cut(s)	307, 439, 559, 634, 748, 919
PctI	GAATGC	1 cut(s)	1129
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	649
PinAI	ACCGGT	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	285, 1017
Ple19I	CGATCG	1 cut(s)	1108
PleI	GAGTC	2 cut(s)	496, 958
PpsI	GAGTC	2 cut(s)	496, 958
Psp1406I	AACGTT	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	856, 865
PspGI	CCWGG	2 cut(s)	856, 865
PvuI	CGATCG	1 cut(s)	1108
RsaI	GTAC	1 cut(s)	1186
RsaNI	GTAC	1 cut(s)	1185
RseI	CAYNNNNRTG	3 cut(s)	372, 813, 885
SatI	GCNGC	2 cut(s)	284, 1016
Sau3AI	GATC	5 cut(s)	73, 85, 253, 1042, 1105
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	2 cut(s)	497, 959
ScrFI	CCNGG	4 cut(s)	858, 867, 1058, 1165
SduI	GDGCHC	8 cut(s)	234, 297, 315, 411, 447, 699, 822, 852
SfaNI	GCATC	1 cut(s)	1099
SmiMI	CAYNNNNRTG	3 cut(s)	372, 813, 885
Sse9I	AATT	4 cut(s)	10, 532, 569, 1169
SsiI	CCGC	4 cut(s)	91, 284, 757, 1016
StyD4I	CCNGG	4 cut(s)	856, 865, 1056, 1163
StyI	CCWWGG	4 cut(s)	162, 597, 672, 786
TaiI	ACGT	2 cut(s)	471, 478
TaqI	TCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	10, 532, 569, 1169
TatI	WGTACW	1 cut(s)	1184
TauI	GCSGC	2 cut(s)	286, 1018
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	4 cut(s)	189, 894, 996, 1109
Tsp45I	GTSAC	4 cut(s)	189, 894, 996, 1109
TspDTI	ATGAA	6 cut(s)	474, 576, 651, 765, 888, 936
TspRI	CASTG	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	649
XapI	RAATTY	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	340
ZraI	GACGTC	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	1186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.