Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

7060533 .. 7061949

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG039300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCCTTCCAGTTACTTGCTTCTGTTTCTTCTTGGAGTGACGGTTTTCACTACCACTCCTTCTCTTGCTGATCACCGCGATGATCACCACAATCCACCGATTCAAAAGCCTCCTACCCATCCCTCAGACAACCACAAACCGCCCATCCACAAACCTCCCATGGTGGAAGTCTCTCATCTTCAGAAGTCACCACAACCCCCCAAACACAAGCCTCCAACAACATTAAGTAAGCAAGAGCCACTCTCGGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGTCACCTCATGATCACCGCTTATTGGAGACCGATGGAAAATCTTCTAAGGGAGACATGTCACCACGAGAGCACAATGAGCCTCGTAAGGGAGAAAAGCCACCACCGGAGCACAAAGGAAACCCAGGCGAGCAACCTCACAAGGGTCACGAGCACAAACCTCCCCATGAACAAAACGTCGGACGTCGTTTGTTAGAGTCTTCTTCCTCAGAGTTGGATGGTAAGCCACCTAAGGGAGAGAAGCCGCCACAAGAACGCAGTGAGCCTCACAAGGAAGTTAAGCCACCACCAAAGCATAAGCCACCTCATGAACACCAGTTGTTAGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCATCGCAAGAGCACAATGAGCCTCGTAAGGGAGATAAGCCACCACCAGAGCACAAACCAGGACATCCAGTTAATGAACTTCATAAGGGTGAGAAGCCACCACCAAACCACAAACCACCTCACGAACAAAACACTGGACGCCGTTTGCTAGAGTCTTCCTCAACTGAGTTGGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTCGACAAAAATGATGATCACAAGCCATTCCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGAAGCCACCACATCACGACCGTCACCTTGGAGAGAATGCAGAGAAGGATGCCAGAGACACACCACACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCAAAGAAGCCTCCAACTGCCCCTCACAAGCCACCTCACAAACCTCCATCTCCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

374

Amino Acids

41.86

Weight (kDa)

9.59

Isoelectric Point (pI)

60.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	502
AccII	CGCG	1 cut(s)	78
AciI	CCGC	5 cut(s)	76, 140, 334, 560, 890
AcuI	CTGAAG	1 cut(s)	164
AcvI	CACGTG	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	499, 811
AfaI	GTAC	1 cut(s)	1060
AfiI	CCNNNNNNNGG	8 cut(s)	284, 340, 404, 458, 548, 662, 701, 950
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	439, 730
Alw21I	GWGCWC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
Alw26I	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
Asp700I	GAANNNNTTC	2 cut(s)	358, 655
AsuC2I	CCSGG	1 cut(s)	932
AsuHPI	GGTGA	8 cut(s)	65, 77, 180, 312, 323, 369, 773, 977
AxyI	CCTNAGG	1 cut(s)	546
BauI	CACGAG	2 cut(s)	381, 464
BbrPI	CACGTG	1 cut(s)	269
BbsI	GAAGAC	2 cut(s)	507, 819
Bbv12I	GWGCWC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
BccI	CCATC	9 cut(s)	126, 152, 265, 344, 527, 641, 682, 839, 1120
BceAI	ACGGC	1 cut(s)	798
BciT130I	CCWGG	2 cut(s)	441, 732
BclI	TGATCA	5 cut(s)	70, 82, 271, 328, 916
BcnI	CCSGG	1 cut(s)	932
BcoDI	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
BfaI	CTAG	1 cut(s)	821
BisI	GCNGC	2 cut(s)	560, 890
BlsI	GCNGC	2 cut(s)	561, 891
BmcAI	AGTACT	1 cut(s)	1060
Bme1390I	CCNGG	3 cut(s)	441, 732, 932
BmrFI	CCNGG	3 cut(s)	441, 732, 932
BmsI	GCATC	1 cut(s)	1000
BpiI	GAAGAC	2 cut(s)	507, 819
BplI	GAGNNNNNCTC	4 cut(s)	227, 259, 815, 847
BpuMI	CCSGG	1 cut(s)	932
BsaAI	YACGTR	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	499, 811
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	5 cut(s)	159, 439, 660, 988, 1037
BsaWI	WCCGGW	2 cut(s)	307, 421
BsaXI	ACNNNNNCTCC	6 cut(s)	27, 40, 57, 70, 302, 332
Bsc4I	CCNNNNNNNGG	8 cut(s)	284, 340, 404, 458, 548, 662, 701, 950
Bse1I	ACTGG	4 cut(s)	9, 631, 740, 811
Bse21I	CCTNAGG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	441, 732
BseDI	CCNNGG	5 cut(s)	159, 439, 660, 988, 1037
BseGI	GGATG	7 cut(s)	118, 144, 538, 652, 736, 850, 1015
BseLI	CCNNNNNNNGG	8 cut(s)	284, 340, 404, 458, 548, 662, 701, 950
BseMII	CTCAG	3 cut(s)	138, 537, 828
BseNI	ACTGG	4 cut(s)	9, 631, 740, 811
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	982
BsiEI	CGRYCG	1 cut(s)	982
BsiHKAI	GWGCWC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
BsiSI	CCGG	3 cut(s)	308, 422, 932
BslI	CCNNNNNNNGG	8 cut(s)	284, 340, 404, 458, 548, 662, 701, 950
BsmAI	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
BsmI	GAATGC	1 cut(s)	1003
Bso31I	GGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
Bsp143I	GATC	5 cut(s)	70, 82, 271, 328, 916
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	5 cut(s)	76, 140, 334, 560, 890
BspCNI	CTCAG	3 cut(s)	137, 536, 829
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	2 cut(s)	325, 622
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	4 cut(s)	9, 631, 740, 811
BssECI	CCNNGG	5 cut(s)	159, 439, 660, 988, 1037
BssMI	GATC	5 cut(s)	70, 82, 271, 328, 916
BssNI	GRCGYC	2 cut(s)	499, 811
BssSI	CACGAG	2 cut(s)	381, 464
BssT1I	CCWWGG	3 cut(s)	159, 660, 988
Bst2BI	CACGAG	2 cut(s)	381, 464
Bst2UI	CCWGG	2 cut(s)	441, 732
Bst4CI	ACNGT	3 cut(s)	43, 983, 1063
BstACI	GRCGYC	2 cut(s)	499, 811
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	5 cut(s)	124, 363, 523, 546, 837
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	7 cut(s)	118, 144, 538, 652, 736, 850, 1015
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	5 cut(s)	73, 85, 274, 331, 919
BstMAI	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
BstMBI	GATC	5 cut(s)	70, 82, 271, 328, 916
BstMCI	CGRYCG	1 cut(s)	982
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 691
BstNI	CCWGG	2 cut(s)	441, 732
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	3 cut(s)	439, 730, 930
BstUI	CGCG	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	507, 819
Bsu36I	CCTNAGG	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	2 cut(s)	93, 660
BtsCI	GGATG	7 cut(s)	118, 144, 538, 652, 736, 850, 1015
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	580, 804
Cac8I	GCNNGC	1 cut(s)	446
CciI	TCATGA	2 cut(s)	325, 622
CseI	GACGC	1 cut(s)	819
Csp6I	GTAC	1 cut(s)	1059
CviAII	CATG	5 cut(s)	160, 326, 373, 482, 623
CviQI	GTAC	1 cut(s)	1059
DdeI	CTNAG	5 cut(s)	124, 363, 523, 546, 837
DpnI	GATC	5 cut(s)	72, 84, 273, 330, 918
DpnII	GATC	5 cut(s)	70, 82, 271, 328, 916
Eco130I	CCWWGG	3 cut(s)	159, 660, 988
Eco31I	GGTCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	164
Eco72I	CACGTG	1 cut(s)	269
Eco81I	CCTNAGG	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	439, 730
EcoT14I	CCWWGG	3 cut(s)	159, 660, 988
ErhI	CCWWGG	3 cut(s)	159, 660, 988
FaeI	CATG	5 cut(s)	163, 329, 376, 485, 626
FaiI	YATR	7 cut(s)	161, 327, 374, 483, 612, 624, 756
FatI	CATG	5 cut(s)	159, 325, 372, 481, 622
FbaI	TGATCA	5 cut(s)	70, 82, 271, 328, 916
Fnu4HI	GCNGC	2 cut(s)	560, 890
FokI	GGATG	7 cut(s)	105, 131, 545, 659, 723, 857, 1022
Fsp4HI	GCNGC	2 cut(s)	560, 890
FspBI	CTAG	1 cut(s)	821
GluI	GCNGC	2 cut(s)	560, 890
HapII	CCGG	3 cut(s)	308, 422, 932
HgaI	GACGC	1 cut(s)	819
Hin1I	GRCGYC	2 cut(s)	499, 811
Hin1II	CATG	5 cut(s)	163, 329, 376, 485, 626
HinfI	GANTC	3 cut(s)	100, 512, 824
HpaII	CCGG	3 cut(s)	308, 422, 932
HphI	GGTGA	8 cut(s)	65, 77, 180, 312, 323, 369, 773, 977
Hpy188I	TCNGA	6 cut(s)	127, 183, 247, 497, 526, 1041
Hpy188III	TCNNGA	5 cut(s)	326, 464, 623, 794, 977
Hpy99I	CGWCG	2 cut(s)	497, 504
HpyAV	CCTTC	4 cut(s)	15, 69, 666, 1000
HpyCH4III	ACNGT	3 cut(s)	43, 983, 1063
HpyCH4IV	ACGT	3 cut(s)	268, 492, 499
HpyCH4V	TGCA	2 cut(s)	1001, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 691
HpyF3I	CTNAG	5 cut(s)	124, 363, 523, 546, 837
HpySE526I	ACGT	3 cut(s)	268, 492, 499
Hsp92I	GRCGYC	2 cut(s)	499, 811
Hsp92II	CATG	5 cut(s)	163, 329, 376, 485, 626
Ksp22I	TGATCA	5 cut(s)	70, 82, 271, 328, 916
Kzo9I	GATC	5 cut(s)	70, 82, 271, 328, 916
LmnI	GCTCC	3 cut(s)	247, 310, 424
LweI	GCATC	1 cut(s)	1000
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	3 cut(s)	268, 492, 499
MaeIII	GTNAC	7 cut(s)	11, 37, 186, 318, 375, 461, 983
MalI	GATC	5 cut(s)	72, 84, 273, 330, 918
MboI	GATC	5 cut(s)	70, 82, 271, 328, 916
MboII	GAAGA	6 cut(s)	20, 170, 351, 507, 510, 819
MhlI	GDGCHC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
MluCI	AATT	1 cut(s)	1043
MlyI	GAGTC	2 cut(s)	521, 833
MmeI	TCCRAC	6 cut(s)	239, 475, 510, 624, 822, 1103
MroXI	GAANNNNTTC	2 cut(s)	358, 655
MseI	TTAA	4 cut(s)	224, 594, 744, 1046
MslI	CAYNNNNRTG	2 cut(s)	78, 759
MspI	CCGG	3 cut(s)	308, 422, 932
MspR9I	CCNGG	3 cut(s)	441, 732, 932
Mva1269I	GAATGC	1 cut(s)	1003
MvaI	CCWGG	2 cut(s)	441, 732
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	394, 691
NciI	CCSGG	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	5 cut(s)	70, 82, 271, 328, 916
NlaIII	CATG	5 cut(s)	163, 329, 376, 485, 626
NmuCI	GTSAC	6 cut(s)	37, 186, 318, 375, 461, 983
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	2 cut(s)	325, 622
PciI	ACATGT	1 cut(s)	372
PctI	GAATGC	1 cut(s)	1003
PdmI	GAANNNNTTC	2 cut(s)	358, 655
PfeI	GAWTC	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	930
PkrI	GCNGC	2 cut(s)	561, 891
PleI	GAGTC	2 cut(s)	520, 832
PmaCI	CACGTG	1 cut(s)	269
PmlI	CACGTG	1 cut(s)	269
PpsI	GAGTC	2 cut(s)	520, 832
Ppu21I	YACGTR	1 cut(s)	269
PscI	ACATGT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	439, 730
PspCI	CACGTG	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	439, 730
RsaI	GTAC	1 cut(s)	1060
RsaNI	GTAC	1 cut(s)	1059
RseI	CAYNNNNRTG	2 cut(s)	78, 759
SaqAI	TTAA	4 cut(s)	224, 594, 744, 1046
SatI	GCNGC	2 cut(s)	560, 890
Sau3AI	GATC	5 cut(s)	70, 82, 271, 328, 916
ScaI	AGTACT	1 cut(s)	1060
SchI	GAGTC	2 cut(s)	521, 833
ScrFI	CCNGG	3 cut(s)	441, 732, 932
SduI	GDGCHC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
SfaNI	GCATC	1 cut(s)	1000
SmiMI	CAYNNNNRTG	2 cut(s)	78, 759
Sse9I	AATT	1 cut(s)	1043
SsiI	CCGC	5 cut(s)	76, 140, 334, 560, 890
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	3 cut(s)	439, 730, 930
StyI	CCWWGG	3 cut(s)	159, 660, 988
TaaI	ACNGT	3 cut(s)	43, 983, 1063
TaiI	ACGT	3 cut(s)	271, 495, 502
TaqI	TCGA	1 cut(s)	903
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	1043
TatI	WGTACW	1 cut(s)	1058
TauI	GCSGC	2 cut(s)	562, 892
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	4 cut(s)	224, 594, 744, 1046
Tru9I	TTAA	4 cut(s)	224, 594, 744, 1046
TscAI	CASTG	2 cut(s)	580, 811
TseFI	GTSAC	6 cut(s)	37, 186, 318, 375, 461, 983
Tsp45I	GTSAC	6 cut(s)	37, 186, 318, 375, 461, 983
TspDTI	ATGAA	4 cut(s)	498, 639, 743, 762
TspRI	CASTG	2 cut(s)	580, 811
XceI	RCATGY	1 cut(s)	376
XmnI	GAANNNNTTC	2 cut(s)	358, 655
XspI	CTAG	1 cut(s)	821
ZraI	GACGTC	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.