Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005424.1

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Forward (+)

86767 .. 88649

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005424.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgccttccaactatttgcttctatttcttcttggagtggtggttttcactaccactccctctttttctgatcaccgcaaaccaccttttcataagcctcctactcatccatcggaccaccacaaaccacccatccacaagcctcccatggtggaagtccctccccttcagaagtcaccacaaccacccaaacacatgcctccaaccacattaactaagcaagagccactcccggagcacaagccatcaaccccacgtgatcaacctccaaagggtgagggagagaagccaccaccgaagcacaagcctggaaaaccttccaagggagaaaagcctcctcaacatcagagtgagcctcctaacggagggaatccaaaaacaaacatgccagagaagccaccatcaacgcggaatctcccactccgcctctcgctgcctcatcgcggcaaccaaacgacgatctcgttcaacgatctctccattagacttcctctccacagtttgttgggggagagagggttttgcagttgccggactcttgcgctggagtctcgtgactggaaaggatttcgatcaagatccggatcggatttgaccgggaagggcaaggctcaaggctggtataaagctggcagtatgggtggggatgacggcaacgcagatgcaaattgtccaatcatggcagggacgaagtttcagttccccatggataacggcgaccgacctcgtgtcagttacagaggtgaaggcggttatggtgcttccaggtgcgaccgctatggtggcatctggcaggatcataactggtcttatgggccagagtggaacgacaaggggtatggcgaggctggcgacggcgaatggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.03

Weight (kDa)

9.48

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	409, 444
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	6 cut(s)	76, 409, 424, 444, 750, 775
AclWI	GGATC	3 cut(s)	573, 592, 804
AcuI	CTGAAG	1 cut(s)	152
AcvI	CACGTG	1 cut(s)	257
AfiI	CCNNNNNNNGG	5 cut(s)	272, 323, 362, 365, 443
AgsI	TTSAA	1 cut(s)	469
AhdI	GACNNNNNGTC	1 cut(s)	728
AjnI	CCWGG	2 cut(s)	307, 764
AluBI	AGCT	1 cut(s)	629
AluI	AGCT	1 cut(s)	629
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	3 cut(s)	573, 592, 804
Aor13HI	TCCGGA	1 cut(s)	581
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	115, 815
AsuC2I	CCSGG	2 cut(s)	233, 598
AsuHPI	GGTGA	4 cut(s)	65, 168, 287, 755
AvaII	GGWCC	1 cut(s)	115
BauI	CACGAG	2 cut(s)	552, 726
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	4 cut(s)	118, 140, 253, 409
BceAI	ACGGC	2 cut(s)	667, 730
BciT130I	CCWGG	2 cut(s)	309, 766
BclI	TGATCA	2 cut(s)	70, 259
BcnI	CCSGG	2 cut(s)	233, 598
BcoDI	GTCTC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	434, 445
BlsI	GCNGC	2 cut(s)	435, 446
Bme1390I	CCNGG	4 cut(s)	233, 309, 598, 766
Bme18I	GGWCC	1 cut(s)	115
BmeRI	GACNNNNNGTC	1 cut(s)	728
BmgT120I	GGNCC	2 cut(s)	115, 815
BmrFI	CCNGG	4 cut(s)	233, 309, 598, 766
BmsI	GCATC	2 cut(s)	652, 795
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	233, 598
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	3 cut(s)	571, 577, 583
BsaJI	CCNNGG	3 cut(s)	147, 321, 705
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 323, 362, 365, 443
Bse1I	ACTGG	2 cut(s)	563, 809
Bse8I	GATNNNNATC	3 cut(s)	571, 577, 583
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	309, 766
BseDI	CCNNGG	3 cut(s)	147, 321, 705
BseGI	GGATG	3 cut(s)	106, 132, 652
BseJI	GATNNNNATC	3 cut(s)	571, 577, 583
BseLI	CCNNNNNNNGG	5 cut(s)	272, 323, 362, 365, 443
BseNI	ACTGG	2 cut(s)	563, 809
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	420
Bsh1236I	CGCG	2 cut(s)	409, 444
Bsh1285I	CGRYCG	2 cut(s)	721, 775
BshFI	GGCC	1 cut(s)	817
BsiEI	CGRYCG	2 cut(s)	721, 775
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	4 cut(s)	233, 532, 582, 597
BslFI	GGGAC	2 cut(s)	143, 700
BslI	CCNNNNNNNGG	5 cut(s)	272, 323, 362, 365, 443
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	2 cut(s)	143, 700
BsnI	GGCC	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
Bsp19I	CCATGG	2 cut(s)	147, 705
BspACI	CCGC	6 cut(s)	76, 409, 424, 444, 750, 775
BspANI	GGCC	1 cut(s)	817
BspEI	TCCGGA	1 cut(s)	581
BspFNI	CGCG	2 cut(s)	409, 444
BspPI	GGATC	3 cut(s)	573, 592, 804
BsrI	ACTGG	2 cut(s)	563, 809
BssECI	CCNNGG	3 cut(s)	147, 321, 705
BssMI	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
BssSI	CACGAG	2 cut(s)	552, 726
BssT1I	CCWWGG	3 cut(s)	147, 321, 705
Bst2BI	CACGAG	2 cut(s)	552, 726
Bst2UI	CCWGG	2 cut(s)	309, 766
Bst4CI	ACNGT	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	631, 850
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	2 cut(s)	147, 705
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	106, 132, 652
BstFNI	CGCG	2 cut(s)	409, 444
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	8 cut(s)	73, 262, 462, 475, 575, 581, 587, 799
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
BstMCI	CGRYCG	2 cut(s)	721, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 783, 849
BstNI	CCWGG	2 cut(s)	309, 766
BstNSI	RCATGY	2 cut(s)	199, 388
BstSCI	CCNGG	4 cut(s)	231, 307, 596, 764
BstUI	CGCG	2 cut(s)	409, 444
BstV1I	GCAGC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	817
BtgI	CCRYGG	2 cut(s)	147, 705
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	3 cut(s)	106, 132, 652
Cac8I	GCNNGC	2 cut(s)	631, 850
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	115, 815
CviAII	CATG	5 cut(s)	148, 196, 385, 679, 706
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	8 cut(s)	72, 261, 461, 474, 574, 580, 586, 798
DpnII	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
DriI	GACNNNNNGTC	1 cut(s)	728
Eam1105I	GACNNNNNGTC	1 cut(s)	728
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	3 cut(s)	147, 321, 705
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRII	CCWGG	2 cut(s)	307, 764
EcoT14I	CCWWGG	3 cut(s)	147, 321, 705
ErhI	CCWWGG	3 cut(s)	147, 321, 705
FaeI	CATG	5 cut(s)	151, 199, 388, 682, 709
FaqI	GGGAC	2 cut(s)	143, 700
FatI	CATG	5 cut(s)	147, 195, 384, 678, 705
FbaI	TGATCA	2 cut(s)	70, 259
Fnu4HI	GCNGC	2 cut(s)	434, 445
FokI	GGATG	3 cut(s)	93, 119, 659
Fsp4HI	GCNGC	2 cut(s)	434, 445
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	434, 445
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	4 cut(s)	233, 532, 582, 597
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	5 cut(s)	151, 199, 388, 682, 709
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	4 cut(s)	370, 412, 535, 548
HpaII	CCGG	4 cut(s)	233, 532, 582, 597
HphI	GGTGA	4 cut(s)	65, 168, 287, 755
Hpy188I	TCNGA	5 cut(s)	70, 115, 171, 348, 589
Hpy188III	TCNNGA	3 cut(s)	554, 576, 582
Hpy99I	CGWCG	2 cut(s)	460, 857
HpyAV	CCTTC	5 cut(s)	15, 176, 327, 595, 740
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	525, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 783, 849
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	5 cut(s)	151, 199, 388, 682, 709
HspAI	GCGC	1 cut(s)	542
Kpn2I	TCCGGA	1 cut(s)	581
Ksp22I	TGATCA	2 cut(s)	70, 259
Kzo9I	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	2 cut(s)	652, 795
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	3 cut(s)	174, 554, 734
MalI	GATC	8 cut(s)	72, 261, 461, 474, 574, 580, 586, 798
MboI	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	667
MlyI	GAGTC	2 cut(s)	529, 557
MmeI	TCCRAC	2 cut(s)	33, 227
MroI	TCCGGA	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	4 cut(s)	233, 532, 582, 597
MspR9I	CCNGG	4 cut(s)	233, 309, 598, 766
MvaI	CCWGG	2 cut(s)	309, 766
MvnI	CGCG	2 cut(s)	409, 444
MwoI	GCNNNNNNNGC	3 cut(s)	394, 783, 849
NciI	CCSGG	2 cut(s)	233, 598
NcoI	CCATGG	2 cut(s)	147, 705
NdeII	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
NlaIII	CATG	5 cut(s)	151, 199, 388, 682, 709
NmuCI	GTSAC	2 cut(s)	174, 554
NspI	RCATGY	2 cut(s)	199, 388
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	370, 412
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	435, 446
PleI	GAGTC	2 cut(s)	529, 556
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	2 cut(s)	529, 556
Ppu21I	YACGTR	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	307, 764
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	307, 764
PspPI	GGNCC	2 cut(s)	115, 815
PsuI	RGATCY	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	2 cut(s)	434, 445
Sau3AI	GATC	8 cut(s)	70, 259, 459, 472, 572, 578, 584, 796
Sau96I	GGNCC	2 cut(s)	115, 815
SchI	GAGTC	2 cut(s)	529, 557
ScrFI	CCNGG	4 cut(s)	233, 309, 598, 766
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	9 cut(s)	88, 259, 268, 319, 631, 727, 745, 770, 869
SfaNI	GCATC	2 cut(s)	652, 795
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	6 cut(s)	76, 409, 424, 444, 750, 775
StyD4I	CCNGG	4 cut(s)	231, 307, 596, 764
StyI	CCWWGG	3 cut(s)	147, 321, 705
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	571
TaqII	GACCGA	1 cut(s)	735
TasI	AATT	1 cut(s)	667
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	2 cut(s)	370, 412
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	174, 554
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	2 cut(s)	174, 554
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	363
XceI	RCATGY	2 cut(s)	199, 388
XmnI	GAANNNNTTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.