Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

6718280 .. 6720244

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG041400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGCCTGCTTCCAAATATTTGCTTCTGTTTCTTCTTGGAGTGTTGGTTTTCACTACCACACACTCTATTGCTGATCACCGCGATGATCACCACAAACCACCCTTTCATAAGCCTCCTACTCATCCATCCGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACAAACCAAACACATGCCTCCAACCACATTAAGTAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGAGATCAACCTCCAAAGGGTAAGGGAGAAAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGCTTGTTGGAGATCGATGGAAAACCTTCTAAGGGAGAGAAATCGCCACGAGAGCACAATGAGCCTCATAAGGGAGAAAAGCCACCGCCGGAGCACAAAGGAAAGCCAGGCGAGCAACCTCACAAGCATCATGAGCACAAACCTCCCCATGAACAAAACGCTGGACGTCGTTTGTTAGAGTCATCCTCCTCAGAGTTGGATGGTAAGCCACCAAAGGGTAAAAATTCTCCACCGAAACGCAAGCCACCTCATGAACACCAATTGTTAGAGTTGGACGGAAAACCTTCCAAGGGAGAGAAGCCACCACGAGAGCATGACGAACCTCACAAGGGAGAGAAGCCACCACCAAAGCATAAGCCACCACATGAACACCAGTTGTTGGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGGACCTCACAAGGGAGAGAAACCACCACCAAAGCATAAGCCACCTCATGAACACCAATTGTTGGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCGCAAGACCACAATGAGGCTCATAAGGGAGAGAAACCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATAGCAAACCTTCCAAGGGAGAGAAGCCACCACAAGAACACAATGAACATAAGGGAGAGAAGCCACCAAAAAAGCACAAGCCACCTCATGAACACCGTTTGTTAGAGACCGATGGAAAACCTTCCAAGGGAGAAAAGCCTCCACAACATCACAATGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCAGGACATCCAGGTAATGAACCTCATAAGGGTGAGAAGCCACCACCAGAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCTTCTTCCACTGAGTTAGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGACAAAAATGATGATCACAAGCCATTTCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGAAGCCACCACATCACGACCGTCAGCTTGGAGAGAATGCAGAGAAGGATGCCAGAGACCCACCACACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCAAAGAAGCCTCCAACTTCCCCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

509

Amino Acids

57.41

Weight (kDa)

9.51

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	505
AccB7I	CCANNNNNTGG	2 cut(s)	715, 829
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	1348
AciI	CCGC	5 cut(s)	79, 337, 422, 869, 1307
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	502, 1228
AfaI	GTAC	1 cut(s)	1477
AjnI	CCWGG	3 cut(s)	442, 1147, 1156
AluBI	AGCT	1 cut(s)	1405
AluI	AGCT	1 cut(s)	1405
Alw21I	GWGCWC	9 cut(s)	255, 318, 336, 393, 432, 474, 765, 1143, 1200
Alw26I	GTCTC	4 cut(s)	178, 1052, 1275, 1428
Ama87I	CYCGRG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	1348
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	5 cut(s)	361, 619, 733, 847, 1072
AspS9I	GGNCC	1 cut(s)	770
AsuHPI	GGTGA	5 cut(s)	68, 80, 170, 183, 1190
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	770
BauI	CACGAG	3 cut(s)	270, 384, 642
BbsI	GAAGAC	1 cut(s)	1236
Bbv12I	GWGCWC	9 cut(s)	255, 318, 336, 393, 432, 474, 765, 1143, 1200
BceAI	ACGGC	1 cut(s)	1215
BciT130I	CCWGG	3 cut(s)	444, 1149, 1158
BclI	TGATCA	3 cut(s)	73, 85, 1333
BcoDI	GTCTC	4 cut(s)	178, 1052, 1275, 1428
BfaI	CTAG	1 cut(s)	1238
BisI	GCNGC	1 cut(s)	1307
BlsI	GCNGC	1 cut(s)	1308
BmcAI	AGTACT	1 cut(s)	1477
Bme1390I	CCNGG	3 cut(s)	444, 1149, 1158
Bme18I	GGWCC	1 cut(s)	770
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	770
BmrFI	CCNGG	3 cut(s)	444, 1149, 1158
BmsI	GCATC	2 cut(s)	472, 1417
BpiI	GAAGAC	1 cut(s)	1236
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
Bsa29I	ATCGAT	1 cut(s)	351
BsaHI	GRCGYC	2 cut(s)	502, 1228
BsaI	GGTCTC	2 cut(s)	1052, 1428
BsaJI	CCNNGG	7 cut(s)	162, 624, 738, 852, 966, 1077, 1454
BsaWI	WCCGGW	3 cut(s)	310, 1223, 1348
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bse1I	ACTGG	1 cut(s)	709
BseAI	TCCGGA	1 cut(s)	1348
BseBI	CCWGG	3 cut(s)	444, 1149, 1158
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	7 cut(s)	162, 624, 738, 852, 966, 1077, 1454
BseGI	GGATG	9 cut(s)	121, 125, 147, 518, 541, 730, 844, 1153, 1432
BseMII	CTCAG	2 cut(s)	540, 1245
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	1399
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	1399
BsiHKAI	GWGCWC	9 cut(s)	255, 318, 336, 393, 432, 474, 765, 1143, 1200
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	4 cut(s)	311, 425, 1224, 1349
BsmAI	GTCTC	4 cut(s)	178, 1052, 1275, 1428
BsmI	GAATGC	1 cut(s)	1420
Bso31I	GGTCTC	2 cut(s)	1052, 1428
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	9 cut(s)	255, 318, 336, 393, 432, 474, 765, 1143, 1200
Bsp13I	TCCGGA	1 cut(s)	1348
Bsp143I	GATC	5 cut(s)	73, 85, 274, 348, 1333
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	79, 337, 422, 869, 1307
BspCNI	CTCAG	2 cut(s)	539, 1246
BspDI	ATCGAT	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	1348
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	6 cut(s)	328, 466, 586, 814, 1039, 1210
BspTNI	GGTCTC	2 cut(s)	1052, 1428
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	7 cut(s)	162, 624, 738, 852, 966, 1077, 1454
BssMI	GATC	5 cut(s)	73, 85, 274, 348, 1333
BssNI	GRCGYC	2 cut(s)	502, 1228
BssSI	CACGAG	3 cut(s)	270, 384, 642
BssT1I	CCWWGG	6 cut(s)	162, 624, 738, 852, 966, 1077
Bst2BI	CACGAG	3 cut(s)	270, 384, 642
Bst2UI	CCWGG	3 cut(s)	444, 1149, 1158
Bst4CI	ACNGT	3 cut(s)	1049, 1400, 1480
BstACI	GRCGYC	2 cut(s)	502, 1228
BstC8I	GCNNGC	3 cut(s)	6, 449, 578
BstDEI	CTNAG	3 cut(s)	366, 526, 1254
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	9 cut(s)	121, 125, 147, 518, 541, 730, 844, 1153, 1432
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	5 cut(s)	76, 88, 277, 351, 1336
BstMAI	GTCTC	4 cut(s)	178, 1052, 1275, 1428
BstMBI	GATC	5 cut(s)	73, 85, 274, 348, 1333
BstMCI	CGRYCG	1 cut(s)	1399
BstMWI	GCNNNNNNNGC	4 cut(s)	388, 397, 448, 469
BstNI	CCWGG	3 cut(s)	444, 1149, 1158
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	3 cut(s)	442, 1147, 1156
BstUI	CGCG	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	1236
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	9 cut(s)	121, 125, 147, 518, 541, 730, 844, 1153, 1432
BtsIMutI	CAGTG	1 cut(s)	1251
Cac8I	GCNNGC	3 cut(s)	6, 449, 578
CciI	TCATGA	6 cut(s)	328, 466, 586, 814, 1039, 1210
Cfr13I	GGNCC	1 cut(s)	770
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	1236
Csp6I	GTAC	1 cut(s)	1476
CviQI	GTAC	1 cut(s)	1476
DdeI	CTNAG	3 cut(s)	366, 526, 1254
DpnI	GATC	5 cut(s)	75, 87, 276, 350, 1335
DpnII	GATC	5 cut(s)	73, 85, 274, 348, 1333
Eco130I	CCWWGG	6 cut(s)	162, 624, 738, 852, 966, 1077
Eco31I	GGTCTC	2 cut(s)	1052, 1428
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	442, 1147, 1156
EcoT14I	CCWWGG	6 cut(s)	162, 624, 738, 852, 966, 1077
ErhI	CCWWGG	6 cut(s)	162, 624, 738, 852, 966, 1077
FbaI	TGATCA	3 cut(s)	73, 85, 1333
Fnu4HI	GCNGC	1 cut(s)	1307
FokI	GGATG	9 cut(s)	108, 112, 134, 505, 548, 737, 851, 1140, 1439
Fsp4HI	GCNGC	1 cut(s)	1307
FspBI	CTAG	1 cut(s)	1238
GluI	GCNGC	1 cut(s)	1307
HapII	CCGG	4 cut(s)	311, 425, 1224, 1349
HgaI	GACGC	1 cut(s)	1236
Hin1I	GRCGYC	2 cut(s)	502, 1228
HinfI	GANTC	2 cut(s)	515, 1241
HpaII	CCGG	4 cut(s)	311, 425, 1224, 1349
HphI	GGTGA	5 cut(s)	68, 80, 170, 183, 1190
Hpy188I	TCNGA	4 cut(s)	130, 186, 529, 1458
Hpy188III	TCNNGA	8 cut(s)	329, 467, 587, 815, 1040, 1211, 1349, 1394
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	8 cut(s)	191, 372, 630, 744, 858, 972, 1083, 1417
HpyCH4III	ACNGT	3 cut(s)	1049, 1400, 1480
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	2 cut(s)	1418, 1484
HpyF10VI	GCNNNNNNNGC	4 cut(s)	388, 397, 448, 469
HpyF3I	CTNAG	3 cut(s)	366, 526, 1254
HpySE526I	ACGT	1 cut(s)	502
Hsp92I	GRCGYC	2 cut(s)	502, 1228
Kpn2I	TCCGGA	1 cut(s)	1348
Ksp22I	TGATCA	3 cut(s)	73, 85, 1333
Kzo9I	GATC	5 cut(s)	73, 85, 274, 348, 1333
LmnI	GCTCC	2 cut(s)	313, 427
LweI	GCATC	2 cut(s)	472, 1417
MaeI	CTAG	1 cut(s)	1238
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	5 cut(s)	75, 87, 276, 350, 1335
MboI	GATC	5 cut(s)	73, 85, 274, 348, 1333
MboII	GAAGA	3 cut(s)	23, 1236, 1239
MfeI	CAATTG	3 cut(s)	596, 824, 938
MhlI	GDGCHC	9 cut(s)	255, 318, 336, 393, 432, 474, 765, 1143, 1200
MluCI	AATT	5 cut(s)	559, 596, 824, 938, 1460
MlyI	GAGTC	2 cut(s)	524, 1250
MroI	TCCGGA	1 cut(s)	1348
MroXI	GAANNNNTTC	5 cut(s)	361, 619, 733, 847, 1072
MseI	TTAA	2 cut(s)	227, 1463
MslI	CAYNNNNRTG	3 cut(s)	81, 1104, 1176
MspI	CCGG	4 cut(s)	311, 425, 1224, 1349
MspR9I	CCNGG	3 cut(s)	444, 1149, 1158
MunI	CAATTG	3 cut(s)	596, 824, 938
Mva1269I	GAATGC	1 cut(s)	1420
MvaI	CCWGG	3 cut(s)	444, 1149, 1158
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	388, 397, 448, 469
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	73, 85, 274, 348, 1333
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	6 cut(s)	328, 466, 586, 814, 1039, 1210
PctI	GAATGC	1 cut(s)	1420
PdmI	GAANNNNTTC	5 cut(s)	361, 619, 733, 847, 1072
PflMI	CCANNNNNTGG	2 cut(s)	715, 829
PkrI	GCNGC	1 cut(s)	1308
PleI	GAGTC	2 cut(s)	523, 1249
PpsI	GAGTC	2 cut(s)	523, 1249
Psp6I	CCWGG	3 cut(s)	442, 1147, 1156
PspGI	CCWGG	3 cut(s)	442, 1147, 1156
PspPI	GGNCC	1 cut(s)	770
RsaI	GTAC	1 cut(s)	1477
RsaNI	GTAC	1 cut(s)	1476
RseI	CAYNNNNRTG	3 cut(s)	81, 1104, 1176
SaqAI	TTAA	2 cut(s)	227, 1463
SatI	GCNGC	1 cut(s)	1307
Sau3AI	GATC	5 cut(s)	73, 85, 274, 348, 1333
Sau96I	GGNCC	1 cut(s)	770
ScaI	AGTACT	1 cut(s)	1477
SchI	GAGTC	2 cut(s)	524, 1250
ScrFI	CCNGG	3 cut(s)	444, 1149, 1158
SduI	GDGCHC	9 cut(s)	255, 318, 336, 393, 432, 474, 765, 1143, 1200
SfaNI	GCATC	2 cut(s)	472, 1417
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	3 cut(s)	81, 1104, 1176
Sse9I	AATT	5 cut(s)	559, 596, 824, 938, 1460
SsiI	CCGC	5 cut(s)	79, 337, 422, 869, 1307
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	1238
StyD4I	CCNGG	3 cut(s)	442, 1147, 1156
StyI	CCWWGG	6 cut(s)	162, 624, 738, 852, 966, 1077
TaaI	ACNGT	3 cut(s)	1049, 1400, 1480
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	1076
TasI	AATT	5 cut(s)	559, 596, 824, 938, 1460
TatI	WGTACW	1 cut(s)	1475
TauI	GCSGC	1 cut(s)	1309
Tru1I	TTAA	2 cut(s)	227, 1463
Tru9I	TTAA	2 cut(s)	227, 1463
TscAI	CASTG	1 cut(s)	1258
TseFI	GTSAC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	1 cut(s)	1258
Van91I	CCANNNNNTGG	2 cut(s)	715, 829
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	5 cut(s)	361, 619, 733, 847, 1072
XspI	CTAG	1 cut(s)	1238
ZraI	GACGTC	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	1477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.