Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

9403493 .. 9405037

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCTTCCAATTACTTGCTTGTATTTCTTATTGGAGTGGTGGCTTTCACTACCGCTTCCACTCTTGCTGATCACCATGATCATCACAAACCACCCGTTCACAAGCCTCCCGTTGTAGAAATCTCTCACCTCGAAAAGCCACCAACCTCACATGATCAACCCCCTAAGGGTAAGGGGGAGAAGCCACCACCCGAGAAAAAGCCACCCCATGAACACCGTTTGTTGGAGTCAGATGGAAGAACTTCTAAGGGAGAGAAACCACCACAAGAGCATAACGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGAACAAACCACCTCATGAACATCGCTTGTTAGAGACTGATGACAAACCTTGCAAAGGAGAGAAGCTAACAAAGGATTGTGATTGTGATGAGCCATGTAAAAGAGGGAAGCCAACACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGACTGATGACAAACCTTCCAAAGGAGAGAAGTCTCCAGAGGAGCACAATGAACCTCGTAAAGGAGAGAAGCCACCACCTAAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGAATCCACCGAGAGAGCACAATGAGCCTCGTAAGGGAGAAAATCCACCACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGGATCCACCAAGAGAGCACAATGAACCTAGTAAGGGAGAAAAGCCACCACCAGAGCATAAACCGGAAAATCCAGGGGATCAACCTCACAAGGGTCATGAGAAGCCACCACCAGAGCACAAGCCTCTCCATGAACAAAACGTAGGACGTCGTTTGTTGGAGTCTGCTTCCTTGGAGTTGGCTGGTAAACCTCCCAAAGGAAAGAAGCCACCAACCACACTTGATAATAAAGATGTCGATCATAAGCAATTCCCAGACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCTCAGCATGATCGTCACCTTGGAGAAAATGTGGAAGAGGATGCAAAAAACCCACCGCAGACGTCACATCGGAAATTAAAACAGCCTCCAAGTACTCTTGCAAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCATAAACCTCCATCTTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

386

Amino Acids

43.39

Weight (kDa)

8.16

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	865, 1067
AciI	CCGC	5 cut(s)	54, 451, 565, 679, 1058
AclWI	GGATC	3 cut(s)	713, 726, 801
AcyI	GRCGYC	2 cut(s)	862, 1064
AfaI	GTAC	1 cut(s)	1096
AjnI	CCWGG	1 cut(s)	787
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw21I	GWGCWC	6 cut(s)	432, 507, 621, 660, 735, 834
Alw26I	GTCTC	3 cut(s)	335, 455, 498
AlwI	GGATC	3 cut(s)	713, 726, 801
Ama87I	CYCGRG	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	65, 119, 1010
AvaI	CYCGRG	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	718
Bbv12I	GWGCWC	6 cut(s)	432, 507, 621, 660, 735, 834
BbvCI	CCTCAGC	1 cut(s)	1005
BccI	CCATC	4 cut(s)	227, 575, 689, 1156
BciT130I	CCWGG	1 cut(s)	789
BclI	TGATCA	3 cut(s)	70, 79, 154
BcoDI	GTCTC	3 cut(s)	335, 455, 498
BfaI	CTAG	1 cut(s)	744
BmcAI	AGTACT	1 cut(s)	1096
Bme1390I	CCNGG	1 cut(s)	789
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	720
BmrFI	CCNGG	1 cut(s)	789
BmsI	GCATC	1 cut(s)	1033
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	2 cut(s)	540, 1005
BsaBI	GATNNNNATC	1 cut(s)	951
BsaHI	GRCGYC	2 cut(s)	862, 1064
BsaJI	CCNNGG	5 cut(s)	594, 708, 788, 885, 1021
BsaWI	WCCGGW	1 cut(s)	778
BsaXI	ACNNNNNCTCC	2 cut(s)	1017, 1047
Bse21I	CCTNAGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	5 cut(s)	594, 708, 788, 885, 1021
BseGI	GGATG	1 cut(s)	1048
BseJI	GATNNNNATC	1 cut(s)	951
BseMII	CTCAG	1 cut(s)	1019
BseRI	GAGGAG	1 cut(s)	515
BsiHKAI	GWGCWC	6 cut(s)	432, 507, 621, 660, 735, 834
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	779
BsmAI	GTCTC	3 cut(s)	335, 455, 498
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	6 cut(s)	432, 507, 621, 660, 735, 834
Bsp143I	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
BspACI	CCGC	5 cut(s)	54, 451, 565, 679, 1058
BspCNI	CTCAG	1 cut(s)	1018
BspHI	TCATGA	5 cut(s)	322, 442, 556, 670, 811
BspLI	GGNNCC	1 cut(s)	720
BspPI	GGATC	3 cut(s)	713, 726, 801
BssECI	CCNNGG	5 cut(s)	594, 708, 788, 885, 1021
BssMI	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
BssNI	GRCGYC	2 cut(s)	862, 1064
BssT1I	CCWWGG	4 cut(s)	594, 708, 885, 1021
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	1032
BstACI	GRCGYC	2 cut(s)	862, 1064
BstDEI	CTNAG	4 cut(s)	165, 246, 540, 1005
BstENI	CCTNNNNNAGG	4 cut(s)	360, 480, 519, 909
BstF5I	GGATG	1 cut(s)	1048
BstKTI	GATC	7 cut(s)	73, 82, 157, 721, 796, 955, 1015
BstMAI	GTCTC	3 cut(s)	335, 455, 498
BstMBI	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 625, 1006
BstNI	CCWGG	1 cut(s)	789
BstSCI	CCNGG	1 cut(s)	787
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
Bsu36I	CCTNAGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	1048
CciI	TCATGA	5 cut(s)	322, 442, 556, 670, 811
Csp6I	GTAC	1 cut(s)	1095
CviQI	GTAC	1 cut(s)	1095
DdeI	CTNAG	4 cut(s)	165, 246, 540, 1005
DpnI	GATC	7 cut(s)	72, 81, 156, 720, 795, 954, 1014
DpnII	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
Eam1104I	CTCTTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	1032
Eco130I	CCWWGG	4 cut(s)	594, 708, 885, 1021
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	4 cut(s)	360, 480, 519, 909
EcoRII	CCWGG	1 cut(s)	787
EcoT14I	CCWWGG	4 cut(s)	594, 708, 885, 1021
ErhI	CCWWGG	4 cut(s)	594, 708, 885, 1021
FbaI	TGATCA	3 cut(s)	70, 79, 154
FokI	GGATG	1 cut(s)	1055
FspBI	CTAG	1 cut(s)	744
GsuI	CTGGAG	1 cut(s)	480
HapII	CCGG	1 cut(s)	779
Hin1I	GRCGYC	2 cut(s)	862, 1064
HinfI	GANTC	3 cut(s)	227, 604, 875
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	3 cut(s)	65, 119, 1010
Hpy166II	GTNNAC	2 cut(s)	100, 902
Hpy188I	TCNGA	3 cut(s)	232, 1074, 1156
Hpy188III	TCNNGA	6 cut(s)	323, 443, 497, 557, 671, 812
Hpy8I	GTNNAC	2 cut(s)	100, 902
Hpy99I	CGWCG	1 cut(s)	867
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	3 cut(s)	855, 862, 1064
HpyCH4V	TGCA	3 cut(s)	360, 1046, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 625, 1006
HpyF3I	CTNAG	4 cut(s)	165, 246, 540, 1005
HpySE526I	ACGT	3 cut(s)	855, 862, 1064
Hsp92I	GRCGYC	2 cut(s)	862, 1064
Ksp22I	TGATCA	3 cut(s)	70, 79, 154
Kzo9I	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
LmnI	GCTCC	1 cut(s)	502
LweI	GCATC	1 cut(s)	1033
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	3 cut(s)	855, 862, 1064
MaeIII	GTNAC	2 cut(s)	1016, 1065
MalI	GATC	7 cut(s)	72, 81, 156, 720, 795, 954, 1014
MboI	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
MboII	GAAGA	3 cut(s)	249, 1049, 1143
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	6 cut(s)	432, 507, 621, 660, 735, 834
MluCI	AATT	3 cut(s)	10, 962, 1076
MlyI	GAGTC	2 cut(s)	236, 884
MmeI	TCCRAC	3 cut(s)	204, 852, 1139
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	1 cut(s)	1079
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	789
MwoI	GCNNNNNNNGC	3 cut(s)	277, 625, 1006
NdeII	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
NlaIV	GGNNCC	1 cut(s)	720
NmuCI	GTSAC	2 cut(s)	1016, 1065
PagI	TCATGA	5 cut(s)	322, 442, 556, 670, 811
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	604
PleI	GAGTC	2 cut(s)	235, 883
PpsI	GAGTC	2 cut(s)	235, 883
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspN4I	GGNNCC	1 cut(s)	720
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	1 cut(s)	1096
RsaNI	GTAC	1 cut(s)	1095
SaqAI	TTAA	1 cut(s)	1079
Sau3AI	GATC	7 cut(s)	70, 79, 154, 718, 793, 952, 1012
ScaI	AGTACT	1 cut(s)	1096
SchI	GAGTC	2 cut(s)	236, 884
ScrFI	CCNGG	1 cut(s)	789
SduI	GDGCHC	6 cut(s)	432, 507, 621, 660, 735, 834
SfaNI	GCATC	1 cut(s)	1033
Sse9I	AATT	3 cut(s)	10, 962, 1076
SsiI	CCGC	5 cut(s)	54, 451, 565, 679, 1058
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	787
StyI	CCWWGG	4 cut(s)	594, 708, 885, 1021
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	3 cut(s)	858, 865, 1067
TaqI	TCGA	2 cut(s)	132, 951
TasI	AATT	3 cut(s)	10, 962, 1076
TatI	WGTACW	1 cut(s)	1094
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	1 cut(s)	1079
Tru9I	TTAA	1 cut(s)	1079
TseFI	GTSAC	2 cut(s)	1016, 1065
Tsp45I	GTSAC	2 cut(s)	1016, 1065
TspDTI	ATGAA	8 cut(s)	225, 339, 459, 525, 573, 687, 753, 861
XagI	CCTNNNNNAGG	4 cut(s)	360, 480, 519, 909
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	1 cut(s)	744
ZraI	GACGTC	2 cut(s)	863, 1065
ZrmI	AGTACT	1 cut(s)	1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.