Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Forward (+)

57857219 .. 57858631

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGCCTGCTTCCAAATATTTGCTTCTGTTTGTTCTTGGAGTGTTGGTTTTCACTACCACTCCCTCTCTTGCTGATAACCACGATGATCAGCACAAACCACCCGTTCATAAGCCTCCTACTCATCCATCCGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACAAACCAAACACATGCCTCCAACCACATTAAGTAAGCAAGAGCCACTCCCCGAGCATAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAAAAGCCACCACAGGAGCACAAGCCGCCTCATGAGCACCGCTTGTTGGAGATCGATGGAAAACCTTCTAAGGGAGAGAAATCGCCACGAGAGCACAATGAGCCTCATAAGGGAGAAAAGCCACCGCCGGAGCACAAAGGAAAGCCAGGCGAGCAACCTCACAAGCATCATGAGCACAAACCTCCCCATGAACAAAACGTTGGACGTCGTTTGTTAGAGTCATCCTCCTCAGAATTGGATGGTAAGCCACCAAAGGGTAAAAATTCTCCACCGAAACGCAAGCCACCTCACGAACACCAATTGTTAGAGTTGGATGGAAAACCTCCCAACGGAGAGAAGCCACCACAAGAGCATGACGGACCTCACAAGGGAGAGAAGCCACCACCAAAGCATAAGCCACCACATGAACACCAGTTGTTGGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCGCAAGACCACAATGAGGCTCATAAAGGAGAGAAACCACCACCACATGAACACCAATTGTTTGAGTTGGATAGCAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAGCATAAGGGAGAGAAGCCACCACAAAAGCACAAGCCACCTCATGAACACCGTTTGTTAGAGACCGATGAAAAACCTTCCAAGGGAGAAAAGCCTCCACAACATCACAATGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCAGGACATCCAGGCAATGAACCTCACAAGGGTGAGAAGCCACCACCAAAGCACAAACCACCTCAAGAACAAAACACCGGACGCCGTTTGCTAGAATCTTCTTCCACTGAGTTAGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGACAAAAATGATGATCACAAGCCATTTCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGAAGCCACCACATCACGACCGTCACCTTGGAGAGAATGCAGAGAAGGATGCCAGAGACCCACCACACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCCAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

471

Amino Acids

52.91

Weight (kDa)

9.45

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccIII	TCCGGA	1 cut(s)	1219
AciI	CCGC	5 cut(s)	323, 337, 422, 755, 1178
AclI	AACGTT	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	502, 1099
AfaI	GTAC	1 cut(s)	1348
AjnI	CCWGG	3 cut(s)	442, 1018, 1027
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AleI	CACNNNNGTG	1 cut(s)	1047
Alw21I	GWGCWC	7 cut(s)	318, 336, 393, 432, 474, 864, 1014
Alw26I	GTCTC	4 cut(s)	178, 923, 1146, 1299
Ama87I	CYCGRG	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	1219
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	2 cut(s)	361, 733
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	4 cut(s)	170, 183, 1061, 1265
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	656
BauI	CACGAG	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	272
Bbv12I	GWGCWC	7 cut(s)	318, 336, 393, 432, 474, 864, 1014
BccI	CCATC	9 cut(s)	133, 155, 268, 347, 530, 605, 719, 1127, 1408
BceAI	ACGGC	1 cut(s)	1086
BciT130I	CCWGG	3 cut(s)	444, 1020, 1029
BclI	TGATCA	3 cut(s)	85, 274, 1204
BcoDI	GTCTC	4 cut(s)	178, 923, 1146, 1299
BfaI	CTAG	1 cut(s)	1109
BisI	GCNGC	2 cut(s)	323, 1178
BlsI	GCNGC	2 cut(s)	324, 1179
BmcAI	AGTACT	1 cut(s)	1348
Bme1390I	CCNGG	3 cut(s)	444, 1020, 1029
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	656
BmrFI	CCNGG	3 cut(s)	444, 1020, 1029
BmsI	GCATC	2 cut(s)	472, 1288
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpuEI	CTTGAG	1 cut(s)	1065
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	272
BsaHI	GRCGYC	2 cut(s)	502, 1099
BsaI	GGTCTC	2 cut(s)	923, 1299
BsaJI	CCNNGG	6 cut(s)	162, 738, 837, 948, 1276, 1325
BsaWI	WCCGGW	2 cut(s)	1094, 1219
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 43, 60, 73
Bse1I	ACTGG	1 cut(s)	709
Bse3DI	GCAATG	1 cut(s)	1039
BseAI	TCCGGA	1 cut(s)	1219
BseBI	CCWGG	3 cut(s)	444, 1020, 1029
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	6 cut(s)	162, 738, 837, 948, 1276, 1325
BseGI	GGATG	9 cut(s)	121, 125, 147, 518, 541, 616, 730, 1024, 1303
BseMI	GCAATG	1 cut(s)	1039
BseMII	CTCAG	2 cut(s)	540, 1116
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	1270
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	1270
BsiHKAI	GWGCWC	7 cut(s)	318, 336, 393, 432, 474, 864, 1014
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	3 cut(s)	425, 1095, 1220
BsmAI	GTCTC	4 cut(s)	178, 923, 1146, 1299
BsmI	GAATGC	1 cut(s)	1291
Bso31I	GGTCTC	2 cut(s)	923, 1299
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	7 cut(s)	318, 336, 393, 432, 474, 864, 1014
Bsp13I	TCCGGA	1 cut(s)	1219
Bsp143I	GATC	4 cut(s)	85, 274, 348, 1204
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	323, 337, 422, 755, 1178
BspCNI	CTCAG	2 cut(s)	539, 1117
BspDI	ATCGAT	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	1219
BspHI	TCATGA	3 cut(s)	328, 466, 910
BspTNI	GGTCTC	2 cut(s)	923, 1299
BsrDI	GCAATG	1 cut(s)	1039
BsrI	ACTGG	1 cut(s)	709
BssECI	CCNNGG	6 cut(s)	162, 738, 837, 948, 1276, 1325
BssMI	GATC	4 cut(s)	85, 274, 348, 1204
BssNI	GRCGYC	2 cut(s)	502, 1099
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	5 cut(s)	162, 738, 837, 948, 1276
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	3 cut(s)	444, 1020, 1029
Bst4CI	ACNGT	3 cut(s)	920, 1271, 1351
BstACI	GRCGYC	2 cut(s)	502, 1099
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	6, 449, 578
BstDEI	CTNAG	3 cut(s)	366, 526, 1125
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	9 cut(s)	121, 125, 147, 518, 541, 616, 730, 1024, 1303
BstKTI	GATC	4 cut(s)	88, 277, 351, 1207
BstMAI	GTCTC	4 cut(s)	178, 923, 1146, 1299
BstMBI	GATC	4 cut(s)	85, 274, 348, 1204
BstMCI	CGRYCG	1 cut(s)	1270
BstMWI	GCNNNNNNNGC	7 cut(s)	322, 331, 388, 397, 448, 469, 868
BstNI	CCWGG	3 cut(s)	444, 1020, 1029
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	3 cut(s)	442, 1018, 1027
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	9 cut(s)	121, 125, 147, 518, 541, 616, 730, 1024, 1303
BtsIMutI	CAGTG	1 cut(s)	1122
Cac8I	GCNNGC	3 cut(s)	6, 449, 578
CciI	TCATGA	3 cut(s)	328, 466, 910
Cfr13I	GGNCC	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	1107
Csp6I	GTAC	1 cut(s)	1347
CviAII	CATG	9 cut(s)	163, 211, 329, 467, 485, 650, 701, 800, 911
CviQI	GTAC	1 cut(s)	1347
DdeI	CTNAG	3 cut(s)	366, 526, 1125
DpnI	GATC	4 cut(s)	87, 276, 350, 1206
DpnII	GATC	4 cut(s)	85, 274, 348, 1204
Eco130I	CCWWGG	5 cut(s)	162, 738, 837, 948, 1276
Eco31I	GGTCTC	2 cut(s)	923, 1299
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	442, 1018, 1027
EcoT14I	CCWWGG	5 cut(s)	162, 738, 837, 948, 1276
ErhI	CCWWGG	5 cut(s)	162, 738, 837, 948, 1276
FaeI	CATG	9 cut(s)	166, 214, 332, 470, 488, 653, 704, 803, 914
FatI	CATG	9 cut(s)	162, 210, 328, 466, 484, 649, 700, 799, 910
FbaI	TGATCA	3 cut(s)	85, 274, 1204
Fnu4HI	GCNGC	2 cut(s)	323, 1178
FokI	GGATG	9 cut(s)	108, 112, 134, 505, 548, 623, 737, 1011, 1310
Fsp4HI	GCNGC	2 cut(s)	323, 1178
FspBI	CTAG	1 cut(s)	1109
GluI	GCNGC	2 cut(s)	323, 1178
HapII	CCGG	3 cut(s)	425, 1095, 1220
HgaI	GACGC	1 cut(s)	1107
Hin1I	GRCGYC	2 cut(s)	502, 1099
Hin1II	CATG	9 cut(s)	166, 214, 332, 470, 488, 653, 704, 803, 914
HinfI	GANTC	2 cut(s)	515, 1112
HpaII	CCGG	3 cut(s)	425, 1095, 1220
HphI	GGTGA	4 cut(s)	170, 183, 1061, 1265
Hpy188I	TCNGA	4 cut(s)	130, 186, 529, 1329
Hpy188III	TCNNGA	7 cut(s)	329, 467, 587, 911, 1082, 1220, 1265
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	6 cut(s)	191, 372, 744, 843, 954, 1288
HpyCH4III	ACNGT	3 cut(s)	920, 1271, 1351
HpyCH4IV	ACGT	3 cut(s)	271, 495, 502
HpyCH4V	TGCA	1 cut(s)	1289
HpyF10VI	GCNNNNNNNGC	7 cut(s)	322, 331, 388, 397, 448, 469, 868
HpyF3I	CTNAG	3 cut(s)	366, 526, 1125
HpySE526I	ACGT	3 cut(s)	271, 495, 502
Hsp92I	GRCGYC	2 cut(s)	502, 1099
Hsp92II	CATG	9 cut(s)	166, 214, 332, 470, 488, 653, 704, 803, 914
Kpn2I	TCCGGA	1 cut(s)	1219
Ksp22I	TGATCA	3 cut(s)	85, 274, 1204
Kzo9I	GATC	4 cut(s)	85, 274, 348, 1204
LmnI	GCTCC	2 cut(s)	313, 427
LweI	GCATC	2 cut(s)	472, 1288
MaeI	CTAG	1 cut(s)	1109
MaeII	ACGT	3 cut(s)	271, 495, 502
MaeIII	GTNAC	2 cut(s)	189, 1271
MalI	GATC	4 cut(s)	87, 276, 350, 1206
MboI	GATC	4 cut(s)	85, 274, 348, 1204
MboII	GAAGA	2 cut(s)	1107, 1110
MfeI	CAATTG	2 cut(s)	596, 809
MhlI	GDGCHC	7 cut(s)	318, 336, 393, 432, 474, 864, 1014
MluCI	AATT	5 cut(s)	530, 559, 596, 809, 1331
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	9 cut(s)	153, 242, 324, 478, 588, 696, 702, 801, 1391
MroI	TCCGGA	1 cut(s)	1219
MroXI	GAANNNNTTC	2 cut(s)	361, 733
MseI	TTAA	2 cut(s)	227, 1334
MslI	CAYNNNNRTG	2 cut(s)	975, 1047
MspI	CCGG	3 cut(s)	425, 1095, 1220
MspR9I	CCNGG	3 cut(s)	444, 1020, 1029
MunI	CAATTG	2 cut(s)	596, 809
Mva1269I	GAATGC	1 cut(s)	1291
MvaI	CCWGG	3 cut(s)	444, 1020, 1029
MwoI	GCNNNNNNNGC	7 cut(s)	322, 331, 388, 397, 448, 469, 868
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	85, 274, 348, 1204
NlaIII	CATG	9 cut(s)	166, 214, 332, 470, 488, 653, 704, 803, 914
NmuCI	GTSAC	2 cut(s)	189, 1271
NspI	RCATGY	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	1047
PagI	TCATGA	3 cut(s)	328, 466, 910
PctI	GAATGC	1 cut(s)	1291
PdmI	GAANNNNTTC	2 cut(s)	361, 733
PfeI	GAWTC	1 cut(s)	1112
PflMI	CCANNNNNTGG	1 cut(s)	715
PkrI	GCNGC	2 cut(s)	324, 1179
PleI	GAGTC	1 cut(s)	523
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	442, 1018, 1027
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	3 cut(s)	442, 1018, 1027
PspPI	GGNCC	1 cut(s)	656
RsaI	GTAC	1 cut(s)	1348
RsaNI	GTAC	1 cut(s)	1347
RseI	CAYNNNNRTG	2 cut(s)	975, 1047
SaqAI	TTAA	2 cut(s)	227, 1334
SatI	GCNGC	2 cut(s)	323, 1178
Sau3AI	GATC	4 cut(s)	85, 274, 348, 1204
Sau96I	GGNCC	1 cut(s)	656
ScaI	AGTACT	1 cut(s)	1348
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	3 cut(s)	444, 1020, 1029
SduI	GDGCHC	7 cut(s)	318, 336, 393, 432, 474, 864, 1014
SfaNI	GCATC	2 cut(s)	472, 1288
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	2 cut(s)	975, 1047
SmlI	CTYRAG	1 cut(s)	1080
SmoI	CTYRAG	1 cut(s)	1080
Sse9I	AATT	5 cut(s)	530, 559, 596, 809, 1331
SsiI	CCGC	5 cut(s)	323, 337, 422, 755, 1178
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	1109
StyD4I	CCNGG	3 cut(s)	442, 1018, 1027
StyI	CCWWGG	5 cut(s)	162, 738, 837, 948, 1276
TaaI	ACNGT	3 cut(s)	920, 1271, 1351
TaiI	ACGT	3 cut(s)	274, 498, 505
TaqI	TCGA	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	947
TasI	AATT	5 cut(s)	530, 559, 596, 809, 1331
TatI	WGTACW	1 cut(s)	1346
TauI	GCSGC	2 cut(s)	325, 1180
TfiI	GAWTC	1 cut(s)	1112
Tru1I	TTAA	2 cut(s)	227, 1334
Tru9I	TTAA	2 cut(s)	227, 1334
TscAI	CASTG	1 cut(s)	1129
TseFI	GTSAC	2 cut(s)	189, 1271
Tsp45I	GTSAC	2 cut(s)	189, 1271
TspDTI	ATGAA	7 cut(s)	95, 501, 717, 816, 927, 951, 1050
TspGWI	ACGGA	2 cut(s)	642, 669
TspRI	CASTG	1 cut(s)	1129
Van91I	CCANNNNNTGG	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	2 cut(s)	361, 733
XspI	CTAG	1 cut(s)	1109
ZraI	GACGTC	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	1348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.