Rh4CG047000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001844
Physical Location & Seq
Reverse (-)
9394538 .. 9396377
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG047000.1

Sequence Viewer

Length: 1470 bp
ATGCCTGCTTCCAAATATTTGCTTCTGTTTCTTCTTGGAGTGTTGGTTTTCACTACCACTCCCTCTCTTGCTGATCACCGCGATGATCACCACAAACCACCCTTTCATAAGCCTCCTACTCATCCATCTGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACAAACCAAACACGTGCCTCCAACCACATTAAGTAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAAAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGCTTGTTGGAGATCGATGGAACACCTTCTAAGGGAGAGAAATCGCCACGAGAGCACAATGAGCCTCATAAGGGAGAAAAGCCACCACCGGAGCACAAAGGAAAGCCAGCCGAGCAACCTCACAAGCATCATGAGCACAAACCTCCCCATGAACAGAACGTTGGACGTCGTTTGTTAGAGTCATCCTCCTCAGAGTTGGATGGTAAGCCACCAAAGGGTAAAAATTCTCCACCGAAACGCAAGCCACCTCATGAACACCAGTTGTTAGAGTTGGATGGAAAACCTTCCAACGGAGAGCAGCCACCCCGAGAGCATGACGGACCTCACAAGGGAGAGAAGCCACCACAAAAGCACAATGGACCTCACAAGGGAGAGAAGCCACCACCAAAGCATAAGCCACCACATGAACACCAGTTGTTGGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCGCAAGACCACAATGAGGCTCATAAGGGAGAGAAACCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATGGCAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAACATAAGGGAGCGAAGCCACCACAAAAGCACAAGCCACCTCATGAACACCGCTTGTTAGAGACCGATGGAAAACCTTCCAAGGGAGAAAAGCCTCCACAACATCACAATGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCAGGACATCCAGGTAATGAACCTCACAAGGGTGAGAAGCTACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCTTCTACCACTGAGTTAGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGACAAAAATGATGATCACAAGCCATATCCGGAACACAAGCCACCAAAGGGCAAGGGAGAGAAGCCACCACATCACGACCGTCACCTTGGAGAGAATGCAGAGAAGGACGACGCCAGAGACCCACCACACAAGCCACCTCGGAAATTAAAGCGTCCAAGTACTGTTGCGAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCACAAACCACCATCTCCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 Peptidase_C48

Protein Analysis

489

Amino Acids

55.06

Weight (kDa)

9.6

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 754
AccII CGCG 1 cut(s) 81
AccIII TCCGGA 1 cut(s) 1273
AciI CCGC 5 cut(s) 79, 337, 794, 973, 1232
AclI AACGTT 1 cut(s) 495
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 167
AcvI CACGTG 2 cut(s) 211, 272
AcyI GRCGYC 3 cut(s) 502, 1153, 1356
AfaI GTAC 1 cut(s) 1405
AflIII ACRYGT 1 cut(s) 208
AjnI CCWGG 2 cut(s) 1072, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AleI CACNNNNGTG 1 cut(s) 1101
AluBI AGCT 1 cut(s) 1111
AluI AGCT 1 cut(s) 1111
Alw21I GWGCWC 8 cut(s) 255, 318, 336, 393, 432, 474, 918, 1068
Alw26I GTCTC 4 cut(s) 178, 977, 1200, 1356
Ama87I CYCGRG 2 cut(s) 248, 642
Aor13HI TCCGGA 1 cut(s) 1273
ApeKI GCWGC 1 cut(s) 634
ApoI RAATTY 1 cut(s) 559
Asp700I GAANNNNTTC 4 cut(s) 361, 619, 772, 997
AspS9I GGNCC 2 cut(s) 656, 695
AsuHPI GGTGA 6 cut(s) 68, 80, 170, 183, 1115, 1319
AvaI CYCGRG 2 cut(s) 248, 642
AvaII GGWCC 2 cut(s) 656, 695
BauI CACGAG 1 cut(s) 384
BbrPI CACGTG 2 cut(s) 211, 272
BbsI GAAGAC 1 cut(s) 1161
Bbv12I GWGCWC 8 cut(s) 255, 318, 336, 393, 432, 474, 918, 1068
BbvI GCAGC 1 cut(s) 646
BceAI ACGGC 1 cut(s) 1140
BciT130I CCWGG 2 cut(s) 1074, 1083
BclI TGATCA 4 cut(s) 73, 85, 274, 1258
BcoDI GTCTC 4 cut(s) 178, 977, 1200, 1356
BfaI CTAG 1 cut(s) 1163
BisI GCNGC 2 cut(s) 635, 1232
BlsI GCNGC 2 cut(s) 636, 1233
BmcAI AGTACT 1 cut(s) 1405
Bme1390I CCNGG 2 cut(s) 1074, 1083
Bme18I GGWCC 2 cut(s) 656, 695
BmeT110I CYCGRG 2 cut(s) 248, 642
BmgT120I GGNCC 2 cut(s) 656, 695
BmrFI CCNGG 2 cut(s) 1074, 1083
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 1161
BplI GAGNNNNNCTC 2 cut(s) 506, 538
Bsa29I ATCGAT 1 cut(s) 351
BsaAI YACGTR 2 cut(s) 211, 272
BsaHI GRCGYC 3 cut(s) 502, 1153, 1356
BsaI GGTCTC 2 cut(s) 977, 1356
BsaJI CCNNGG 6 cut(s) 162, 777, 891, 1002, 1330, 1382
BsaWI WCCGGW 4 cut(s) 310, 424, 1148, 1273
BsaXI ACNNNNNCTCC 4 cut(s) 30, 43, 60, 73
Bse1I ACTGG 2 cut(s) 595, 748
BseAI TCCGGA 1 cut(s) 1273
BseBI CCWGG 2 cut(s) 1074, 1083
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 6 cut(s) 162, 777, 891, 1002, 1330, 1382
BseGI GGATG 8 cut(s) 121, 147, 518, 541, 616, 769, 883, 1078
BseMII CTCAG 2 cut(s) 540, 1170
BseNI ACTGG 2 cut(s) 595, 748
BseRI GAGGAG 1 cut(s) 514
BseXI GCAGC 1 cut(s) 646
Bsh1236I CGCG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 1324
BshVI ATCGAT 1 cut(s) 351
BsiEI CGRYCG 1 cut(s) 1324
BsiHKAI GWGCWC 8 cut(s) 255, 318, 336, 393, 432, 474, 918, 1068
BsiHKCI CYCGRG 2 cut(s) 248, 642
BsiSI CCGG 4 cut(s) 311, 425, 1149, 1274
BsmAI GTCTC 4 cut(s) 178, 977, 1200, 1356
BsmI GAATGC 1 cut(s) 1345
Bso31I GGTCTC 2 cut(s) 977, 1356
BsoBI CYCGRG 2 cut(s) 248, 642
Bsp1286I GDGCHC 8 cut(s) 255, 318, 336, 393, 432, 474, 918, 1068
Bsp13I TCCGGA 1 cut(s) 1273
Bsp143I GATC 5 cut(s) 73, 85, 274, 348, 1258
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 5 cut(s) 79, 337, 794, 973, 1232
BspCNI CTCAG 2 cut(s) 539, 1171
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 1273
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 5 cut(s) 328, 466, 586, 964, 1135
BspTNI GGTCTC 2 cut(s) 977, 1356
BsrI ACTGG 2 cut(s) 595, 748
BssECI CCNNGG 6 cut(s) 162, 777, 891, 1002, 1330, 1382
BssMI GATC 5 cut(s) 73, 85, 274, 348, 1258
BssNI GRCGYC 3 cut(s) 502, 1153, 1356
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 5 cut(s) 162, 777, 891, 1002, 1330
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 1074, 1083
Bst4CI ACNGT 2 cut(s) 1325, 1408
BstACI GRCGYC 3 cut(s) 502, 1153, 1356
BstBAI YACGTR 2 cut(s) 211, 272
BstC8I GCNNGC 3 cut(s) 6, 444, 578
BstDEI CTNAG 3 cut(s) 366, 526, 1179
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 8 cut(s) 121, 147, 518, 541, 616, 769, 883, 1078
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 5 cut(s) 76, 88, 277, 351, 1261
BstMAI GTCTC 4 cut(s) 178, 977, 1200, 1356
BstMBI GATC 5 cut(s) 73, 85, 274, 348, 1258
BstMCI CGRYCG 1 cut(s) 1324
BstMWI GCNNNNNNNGC 4 cut(s) 388, 397, 448, 469
BstNI CCWGG 2 cut(s) 1074, 1083
BstSCI CCNGG 2 cut(s) 1072, 1081
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 1161
Bsu15I ATCGAT 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 8 cut(s) 121, 147, 518, 541, 616, 769, 883, 1078
BtsIMutI CAGTG 1 cut(s) 1176
Cac8I GCNNGC 3 cut(s) 6, 444, 578
CciI TCATGA 5 cut(s) 328, 466, 586, 964, 1135
Cfr13I GGNCC 2 cut(s) 656, 695
ClaI ATCGAT 1 cut(s) 351
CseI GACGC 3 cut(s) 1161, 1364, 1385
Csp6I GTAC 1 cut(s) 1404
CviQI GTAC 1 cut(s) 1404
DdeI CTNAG 3 cut(s) 366, 526, 1179
DpnI GATC 5 cut(s) 75, 87, 276, 350, 1260
DpnII GATC 5 cut(s) 73, 85, 274, 348, 1258
Eco130I CCWWGG 5 cut(s) 162, 777, 891, 1002, 1330
Eco31I GGTCTC 2 cut(s) 977, 1356
Eco47I GGWCC 2 cut(s) 656, 695
Eco57I CTGAAG 1 cut(s) 167
Eco72I CACGTG 2 cut(s) 211, 272
Eco88I CYCGRG 2 cut(s) 248, 642
EcoRII CCWGG 2 cut(s) 1072, 1081
EcoT14I CCWWGG 5 cut(s) 162, 777, 891, 1002, 1330
ErhI CCWWGG 5 cut(s) 162, 777, 891, 1002, 1330
FbaI TGATCA 4 cut(s) 73, 85, 274, 1258
Fnu4HI GCNGC 2 cut(s) 635, 1232
FokI GGATG 8 cut(s) 108, 134, 505, 548, 623, 776, 890, 1065
Fsp4HI GCNGC 2 cut(s) 635, 1232
FspBI CTAG 1 cut(s) 1163
GluI GCNGC 2 cut(s) 635, 1232
HapII CCGG 4 cut(s) 311, 425, 1149, 1274
HgaI GACGC 3 cut(s) 1161, 1364, 1385
Hin1I GRCGYC 3 cut(s) 502, 1153, 1356
HinfI GANTC 2 cut(s) 515, 1166
HpaII CCGG 4 cut(s) 311, 425, 1149, 1274
HphI GGTGA 6 cut(s) 68, 80, 170, 183, 1115, 1319
Hpy188I TCNGA 4 cut(s) 130, 186, 529, 1386
Hpy188III TCNNGA 7 cut(s) 329, 467, 587, 965, 1136, 1274, 1319
Hpy99I CGWCG 2 cut(s) 507, 1358
HpyAV CCTTC 7 cut(s) 191, 372, 630, 783, 897, 1008, 1342
HpyCH4III ACNGT 2 cut(s) 1325, 1408
HpyCH4IV ACGT 4 cut(s) 210, 271, 495, 502
HpyCH4V TGCA 1 cut(s) 1343
HpyF10VI GCNNNNNNNGC 4 cut(s) 388, 397, 448, 469
HpyF3I CTNAG 3 cut(s) 366, 526, 1179
HpySE526I ACGT 4 cut(s) 210, 271, 495, 502
Hsp92I GRCGYC 3 cut(s) 502, 1153, 1356
Kpn2I TCCGGA 1 cut(s) 1273
Ksp22I TGATCA 4 cut(s) 73, 85, 274, 1258
Kzo9I GATC 5 cut(s) 73, 85, 274, 348, 1258
LmnI GCTCC 3 cut(s) 313, 427, 932
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 1163
MaeII ACGT 4 cut(s) 210, 271, 495, 502
MaeIII GTNAC 2 cut(s) 189, 1325
MalI GATC 5 cut(s) 75, 87, 276, 350, 1260
MboI GATC 5 cut(s) 73, 85, 274, 348, 1258
MboII GAAGA 3 cut(s) 23, 1161, 1426
MfeI CAATTG 1 cut(s) 863
MhlI GDGCHC 8 cut(s) 255, 318, 336, 393, 432, 474, 918, 1068
MluCI AATT 3 cut(s) 559, 863, 1388
MlyI GAGTC 2 cut(s) 524, 1175
MroI TCCGGA 1 cut(s) 1273
MroXI GAANNNNTTC 4 cut(s) 361, 619, 772, 997
MseI TTAA 2 cut(s) 227, 1391
MslI CAYNNNNRTG 3 cut(s) 81, 1029, 1101
MspI CCGG 4 cut(s) 311, 425, 1149, 1274
MspR9I CCNGG 2 cut(s) 1074, 1083
MunI CAATTG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 1345
MvaI CCWGG 2 cut(s) 1074, 1083
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 4 cut(s) 388, 397, 448, 469
NcoI CCATGG 1 cut(s) 162
NdeII GATC 5 cut(s) 73, 85, 274, 348, 1258
NmeAIII GCCGAG 1 cut(s) 472
NmuCI GTSAC 2 cut(s) 189, 1325
OliI CACNNNNGTG 1 cut(s) 1101
PagI TCATGA 5 cut(s) 328, 466, 586, 964, 1135
PctI GAATGC 1 cut(s) 1345
PdmI GAANNNNTTC 4 cut(s) 361, 619, 772, 997
PflMI CCANNNNNTGG 1 cut(s) 754
PkrI GCNGC 2 cut(s) 636, 1233
PleI GAGTC 2 cut(s) 523, 1174
PmaCI CACGTG 2 cut(s) 211, 272
PmlI CACGTG 2 cut(s) 211, 272
PpsI GAGTC 2 cut(s) 523, 1174
Ppu21I YACGTR 2 cut(s) 211, 272
Psp1406I AACGTT 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 1072, 1081
PspCI CACGTG 2 cut(s) 211, 272
PspGI CCWGG 2 cut(s) 1072, 1081
PspPI GGNCC 2 cut(s) 656, 695
RsaI GTAC 1 cut(s) 1405
RsaNI GTAC 1 cut(s) 1404
RseI CAYNNNNRTG 3 cut(s) 81, 1029, 1101
SaqAI TTAA 2 cut(s) 227, 1391
SatI GCNGC 2 cut(s) 635, 1232
Sau3AI GATC 5 cut(s) 73, 85, 274, 348, 1258
Sau96I GGNCC 2 cut(s) 656, 695
ScaI AGTACT 1 cut(s) 1405
SchI GAGTC 2 cut(s) 524, 1175
ScrFI CCNGG 2 cut(s) 1074, 1083
SduI GDGCHC 8 cut(s) 255, 318, 336, 393, 432, 474, 918, 1068
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 2 cut(s) 656, 695
SmiMI CAYNNNNRTG 3 cut(s) 81, 1029, 1101
Sse9I AATT 3 cut(s) 559, 863, 1388
SsiI CCGC 5 cut(s) 79, 337, 794, 973, 1232
SspI AATATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 1163
StyD4I CCNGG 2 cut(s) 1072, 1081
StyI CCWWGG 5 cut(s) 162, 777, 891, 1002, 1330
TaaI ACNGT 2 cut(s) 1325, 1408
TaiI ACGT 4 cut(s) 213, 274, 498, 505
TaqI TCGA 1 cut(s) 351
TaqII GACCGA 1 cut(s) 1001
TasI AATT 3 cut(s) 559, 863, 1388
TatI WGTACW 1 cut(s) 1403
TauI GCSGC 1 cut(s) 1234
Tru1I TTAA 2 cut(s) 227, 1391
Tru9I TTAA 2 cut(s) 227, 1391
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 2 cut(s) 189, 1325
TseI GCWGC 1 cut(s) 634
Tsp45I GTSAC 2 cut(s) 189, 1325
TspDTI ATGAA 9 cut(s) 95, 501, 603, 756, 870, 936, 981, 1104, 1152
TspGWI ACGGA 2 cut(s) 642, 669
TspRI CASTG 1 cut(s) 1183
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 2 cut(s) 656, 695
XapI RAATTY 1 cut(s) 559
XmnI GAANNNNTTC 4 cut(s) 361, 619, 772, 997
XspI CTAG 1 cut(s) 1163
ZraI GACGTC 1 cut(s) 503
ZrmI AGTACT 1 cut(s) 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.