Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

6034801 .. 6053392

Gene Structure 18592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGCCTGCTTCCAAATATTTGCTTCTGTTTCTTCTTGGAGTGTTGGTTTTCACGATCACTCCCTCTCTTGCTGATCACCGCGATGATCACCACAAAACACCCGTTCATAAGCCTCCTACTCATCCATCCGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACAAACCAAACACATGCCTCCAACCACATTAAGTAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGATCACCGCTTATTGGAGACCGATGGAAAATCTTCTAAGGGAGACAAGTCACCACGAGAGCACAATGAGCCTCGTAAGGGAGAAAAGCCACCACCGGAGCACAAAGGAAACCCGGGCGAGCAACCTCACAAGGGGCACGAGCATAAGCCACCTCATGAACACCGGTTGTTAGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGTCTCCAAAGGAGCACAATGAACCTCGTAAAGGAGAGAAGCCACCACCTAAGCACGAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGAATCCACCGAGAGAGCACGGTGAGCCTCGTAAGGGAGAAAAGCCACCACCGAAACGCAAGCCACCTCATGAACACCAATTGTTAGAGCTGGATGGAAAACCTTCCAAAGGAGAGAAGCCACCACGAGAGCATGACGGACCTCACAAGGGAGAGAAGCCACCACCAAAGCATAAGCCACCACATGAACACCAGTTGTTGGAGTTAGATGGAAAACCTTCCAAGGGAGAGAAGCCACCGCAAGACCACAATGAGGCTCATAAGGGAGAGAAACCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATAGCAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAACATAAGGGAGAGAAGCCACCACAAAAGCACAAGCCACCTCATGAACACCGTTTGTTAGAGACCGATGGAAAACCTTCCAAGGGAGAAAAGCCTCCACAACATCACAATGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCAGGACATCCAGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCTTCTTCCACTGAGTTAGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGACAAAAATGATGATCACAAGCCATTTCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGAAGCCACCACATCACGACCGTCACCTTGCAGAGAATGCAGAGAAGGATGCCAGAGACCCACCACACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCAAAGAAACCTCCAACTTCCCCTCACAAGCCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

517

Amino Acids

58.35

Weight (kDa)

9.55

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	841
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	1360
AciI	CCGC	5 cut(s)	79, 337, 607, 881, 1319
AcuI	CTGAAG	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	1240
AfaI	GTAC	1 cut(s)	1489
AgeI	ACCGGT	1 cut(s)	492
AjnI	CCWGG	2 cut(s)	1159, 1168
AleI	CACNNNNGTG	1 cut(s)	1188
AluBI	AGCT	1 cut(s)	733
AluI	AGCT	1 cut(s)	733
Alw21I	GWGCWC	8 cut(s)	255, 318, 393, 432, 549, 663, 1005, 1155
Alw26I	GTCTC	7 cut(s)	178, 341, 366, 540, 1064, 1287, 1440
Ama87I	CYCGRG	2 cut(s)	248, 442
Aor13HI	TCCGGA	1 cut(s)	1360
AsiGI	ACCGGT	1 cut(s)	492
Asp700I	GAANNNNTTC	5 cut(s)	361, 517, 745, 859, 1084
AspS9I	GGNCC	1 cut(s)	782
AsuC2I	CCSGG	2 cut(s)	443, 444
AsuHPI	GGTGA	9 cut(s)	68, 80, 170, 183, 326, 372, 677, 1202, 1406
AvaI	CYCGRG	2 cut(s)	248, 442
AvaII	GGWCC	1 cut(s)	782
BaeGI	GKGCMC	1 cut(s)	468
BauI	CACGAG	3 cut(s)	384, 467, 768
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	1248
Bbv12I	GWGCWC	8 cut(s)	255, 318, 393, 432, 549, 663, 1005, 1155
BceAI	ACGGC	1 cut(s)	1227
BciT130I	CCWGG	2 cut(s)	1161, 1170
BclI	TGATCA	5 cut(s)	73, 85, 274, 331, 1345
BcnI	CCSGG	2 cut(s)	443, 444
BcoDI	GTCTC	7 cut(s)	178, 341, 366, 540, 1064, 1287, 1440
BfaI	CTAG	1 cut(s)	1250
BisI	GCNGC	1 cut(s)	1319
BlsI	GCNGC	1 cut(s)	1320
BmcAI	AGTACT	1 cut(s)	1489
Bme1390I	CCNGG	4 cut(s)	443, 444, 1161, 1170
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	2 cut(s)	248, 442
BmgT120I	GGNCC	1 cut(s)	782
BmrFI	CCNGG	4 cut(s)	443, 444, 1161, 1170
BmsI	GCATC	1 cut(s)	1429
BpiI	GAAGAC	1 cut(s)	1248
Bpu10I	CCTNAGC	1 cut(s)	582
BpuMI	CCSGG	2 cut(s)	443, 444
BsaAI	YACGTR	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	1240
BsaI	GGTCTC	3 cut(s)	341, 1064, 1440
BsaJI	CCNNGG	8 cut(s)	162, 442, 522, 636, 864, 978, 1089, 1466
BsaWI	WCCGGW	5 cut(s)	310, 424, 492, 1235, 1360
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 43, 60, 73
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	1 cut(s)	835
BseAI	TCCGGA	1 cut(s)	1360
BseBI	CCWGG	2 cut(s)	1161, 1170
BseDI	CCNNGG	8 cut(s)	162, 442, 522, 636, 864, 978, 1089, 1466
BseGI	GGATG	7 cut(s)	121, 125, 147, 514, 742, 1165, 1444
BseMII	CTCAG	1 cut(s)	1257
BseNI	ACTGG	1 cut(s)	835
BseSI	GKGCMC	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	1411
BshTI	ACCGGT	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	1411
BsiHKAI	GWGCWC	8 cut(s)	255, 318, 393, 432, 549, 663, 1005, 1155
BsiHKCI	CYCGRG	2 cut(s)	248, 442
BsiSI	CCGG	6 cut(s)	311, 425, 443, 493, 1236, 1361
BsmAI	GTCTC	7 cut(s)	178, 341, 366, 540, 1064, 1287, 1440
BsmI	GAATGC	1 cut(s)	1432
Bso31I	GGTCTC	3 cut(s)	341, 1064, 1440
BsoBI	CYCGRG	2 cut(s)	248, 442
Bsp1286I	GDGCHC	9 cut(s)	255, 318, 393, 432, 468, 549, 663, 1005, 1155
Bsp13I	TCCGGA	1 cut(s)	1360
Bsp143I	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	79, 337, 607, 881, 1319
BspCNI	CTCAG	1 cut(s)	1258
BspEI	TCCGGA	1 cut(s)	1360
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	6 cut(s)	328, 484, 598, 712, 1051, 1222
BspTNI	GGTCTC	3 cut(s)	341, 1064, 1440
BsrFI	RCCGGY	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	835
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	8 cut(s)	162, 442, 522, 636, 864, 978, 1089, 1466
BssMI	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
BssNI	GRCGYC	1 cut(s)	1240
BssSI	CACGAG	3 cut(s)	384, 467, 768
BssT1I	CCWWGG	6 cut(s)	162, 522, 636, 864, 978, 1089
Bst2BI	CACGAG	3 cut(s)	384, 467, 768
Bst2UI	CCWGG	2 cut(s)	1161, 1170
Bst4CI	ACNGT	4 cut(s)	665, 1061, 1412, 1492
BstACI	GRCGYC	1 cut(s)	1240
BstAPI	GCANNNNNTGC	1 cut(s)	1427
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	6, 449, 704
BstDEI	CTNAG	3 cut(s)	366, 582, 1266
BstDSI	CCRYGG	1 cut(s)	162
BstENI	CCTNNNNNAGG	2 cut(s)	561, 750
BstF5I	GGATG	7 cut(s)	121, 125, 147, 514, 742, 1165, 1444
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	6 cut(s)	57, 76, 88, 277, 334, 1348
BstMAI	GTCTC	7 cut(s)	178, 341, 366, 540, 1064, 1287, 1440
BstMBI	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
BstMCI	CGRYCG	1 cut(s)	1411
BstMWI	GCNNNNNNNGC	3 cut(s)	397, 667, 1427
BstNI	CCWGG	2 cut(s)	1161, 1170
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	4 cut(s)	441, 442, 1159, 1168
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	1248
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	7 cut(s)	121, 125, 147, 514, 742, 1165, 1444
BtsIMutI	CAGTG	1 cut(s)	1263
Cac8I	GCNNGC	3 cut(s)	6, 449, 704
CciI	TCATGA	6 cut(s)	328, 484, 598, 712, 1051, 1222
Cfr10I	RCCGGY	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	782
Cfr9I	CCCGGG	1 cut(s)	442
CseI	GACGC	1 cut(s)	1248
Csp6I	GTAC	1 cut(s)	1488
CspAI	ACCGGT	1 cut(s)	492
CviQI	GTAC	1 cut(s)	1488
DdeI	CTNAG	3 cut(s)	366, 582, 1266
DpnI	GATC	6 cut(s)	56, 75, 87, 276, 333, 1347
DpnII	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
Eco130I	CCWWGG	6 cut(s)	162, 522, 636, 864, 978, 1089
Eco31I	GGTCTC	3 cut(s)	341, 1064, 1440
Eco47I	GGWCC	1 cut(s)	782
Eco57I	CTGAAG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	248, 442
EcoNI	CCTNNNNNAGG	2 cut(s)	561, 750
EcoRII	CCWGG	2 cut(s)	1159, 1168
EcoT14I	CCWWGG	6 cut(s)	162, 522, 636, 864, 978, 1089
ErhI	CCWWGG	6 cut(s)	162, 522, 636, 864, 978, 1089
FbaI	TGATCA	5 cut(s)	73, 85, 274, 331, 1345
Fnu4HI	GCNGC	1 cut(s)	1319
FokI	GGATG	7 cut(s)	108, 112, 134, 521, 749, 1152, 1451
Fsp4HI	GCNGC	1 cut(s)	1319
FspBI	CTAG	1 cut(s)	1250
GluI	GCNGC	1 cut(s)	1319
HapII	CCGG	6 cut(s)	311, 425, 443, 493, 1236, 1361
HgaI	GACGC	1 cut(s)	1248
Hin1I	GRCGYC	1 cut(s)	1240
HinfI	GANTC	2 cut(s)	646, 1253
HpaII	CCGG	6 cut(s)	311, 425, 443, 493, 1236, 1361
HphI	GGTGA	9 cut(s)	68, 80, 170, 183, 326, 372, 677, 1202, 1406
Hpy188I	TCNGA	3 cut(s)	130, 186, 1470
Hpy188III	TCNNGA	9 cut(s)	52, 329, 485, 599, 713, 1052, 1223, 1361, 1406
HpyAV	CCTTC	7 cut(s)	191, 528, 756, 870, 984, 1095, 1429
HpyCH4III	ACNGT	4 cut(s)	665, 1061, 1412, 1492
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	1421, 1430, 1496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	397, 667, 1427
HpyF3I	CTNAG	3 cut(s)	366, 582, 1266
HpySE526I	ACGT	1 cut(s)	271
Hsp92I	GRCGYC	1 cut(s)	1240
Kpn2I	TCCGGA	1 cut(s)	1360
Ksp22I	TGATCA	5 cut(s)	73, 85, 274, 331, 1345
Kzo9I	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
LmnI	GCTCC	3 cut(s)	313, 427, 544
LweI	GCATC	1 cut(s)	1429
MaeI	CTAG	1 cut(s)	1250
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	3 cut(s)	189, 378, 1412
MalI	GATC	6 cut(s)	56, 75, 87, 276, 333, 1347
MboI	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
MboII	GAAGA	4 cut(s)	23, 354, 1248, 1251
MfeI	CAATTG	2 cut(s)	722, 950
MhlI	GDGCHC	9 cut(s)	255, 318, 393, 432, 468, 549, 663, 1005, 1155
MluCI	AATT	3 cut(s)	722, 950, 1472
MlyI	GAGTC	1 cut(s)	1262
MmeI	TCCRAC	6 cut(s)	153, 242, 486, 822, 942, 1532
MroI	TCCGGA	1 cut(s)	1360
MroXI	GAANNNNTTC	5 cut(s)	361, 517, 745, 859, 1084
MseI	TTAA	2 cut(s)	227, 1475
MslI	CAYNNNNRTG	3 cut(s)	81, 1116, 1188
MspI	CCGG	6 cut(s)	311, 425, 443, 493, 1236, 1361
MspR9I	CCNGG	4 cut(s)	443, 444, 1161, 1170
MunI	CAATTG	2 cut(s)	722, 950
Mva1269I	GAATGC	1 cut(s)	1432
MvaI	CCWGG	2 cut(s)	1161, 1170
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	397, 667, 1427
NciI	CCSGG	2 cut(s)	443, 444
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
NmuCI	GTSAC	3 cut(s)	189, 378, 1412
NspI	RCATGY	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	1188
PagI	TCATGA	6 cut(s)	328, 484, 598, 712, 1051, 1222
PctI	GAATGC	1 cut(s)	1432
PdmI	GAANNNNTTC	5 cut(s)	361, 517, 745, 859, 1084
PfeI	GAWTC	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	841
PinAI	ACCGGT	1 cut(s)	492
PkrI	GCNGC	1 cut(s)	1320
PleI	GAGTC	1 cut(s)	1261
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	1261
Ppu21I	YACGTR	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	1159, 1168
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	1159, 1168
PspPI	GGNCC	1 cut(s)	782
RsaI	GTAC	1 cut(s)	1489
RsaNI	GTAC	1 cut(s)	1488
RseI	CAYNNNNRTG	3 cut(s)	81, 1116, 1188
SaqAI	TTAA	2 cut(s)	227, 1475
SatI	GCNGC	1 cut(s)	1319
Sau3AI	GATC	6 cut(s)	54, 73, 85, 274, 331, 1345
Sau96I	GGNCC	1 cut(s)	782
ScaI	AGTACT	1 cut(s)	1489
SchI	GAGTC	1 cut(s)	1262
ScrFI	CCNGG	4 cut(s)	443, 444, 1161, 1170
SduI	GDGCHC	9 cut(s)	255, 318, 393, 432, 468, 549, 663, 1005, 1155
SfaNI	GCATC	1 cut(s)	1429
SinI	GGWCC	1 cut(s)	782
SmaI	CCCGGG	1 cut(s)	444
SmiMI	CAYNNNNRTG	3 cut(s)	81, 1116, 1188
Sse9I	AATT	3 cut(s)	722, 950, 1472
SsiI	CCGC	5 cut(s)	79, 337, 607, 881, 1319
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	1250
StyD4I	CCNGG	4 cut(s)	441, 442, 1159, 1168
StyI	CCWWGG	6 cut(s)	162, 522, 636, 864, 978, 1089
TaaI	ACNGT	4 cut(s)	665, 1061, 1412, 1492
TaiI	ACGT	1 cut(s)	274
TaqII	GACCGA	2 cut(s)	365, 1088
TasI	AATT	3 cut(s)	722, 950, 1472
TatI	WGTACW	1 cut(s)	1487
TauI	GCSGC	1 cut(s)	1321
TfiI	GAWTC	1 cut(s)	646
Tru1I	TTAA	2 cut(s)	227, 1475
Tru9I	TTAA	2 cut(s)	227, 1475
TscAI	CASTG	1 cut(s)	1270
TseFI	GTSAC	3 cut(s)	189, 378, 1412
Tsp45I	GTSAC	3 cut(s)	189, 378, 1412
TspGWI	ACGGA	1 cut(s)	795
TspMI	CCCGGG	1 cut(s)	442
TspRI	CASTG	1 cut(s)	1270
Van91I	CCANNNNNTGG	1 cut(s)	841
VpaK11BI	GGWCC	1 cut(s)	782
XagI	CCTNNNNNAGG	2 cut(s)	561, 750
XceI	RCATGY	1 cut(s)	214
XmaI	CCCGGG	1 cut(s)	442
XmnI	GAANNNNTTC	5 cut(s)	361, 517, 745, 859, 1084
XspI	CTAG	1 cut(s)	1250
ZrmI	AGTACT	1 cut(s)	1489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.