Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Forward (+)

57441694 .. 57443055

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGCCTTCCAACTATTTCCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTCTTGCTGATCAGCACGATGATCACCGCAAACCACCGATTCACAAGCCCCCTACCCATCCCTCAGACCACCACAAACCACCCATCCACAAGCCTCACATGGTGGAAGTCTCTCACCTTCAGAAGCCACCACAACCCCCCAAACATAAGCCTCCAACGACATTAAGCAAGCAAGAGCCACTCCCTGACCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGTGCACAAGCCACCTCATGAGCACCGTCTGTTAGAAACTGACGACAAACCTTCCAAGGGAGAGAAGCCGCATCAAGAGCACAATGAGCATCACAAGGGAGGAAAGTCACCACCAAAGCACAAGCCACCTCATGAACACCAATTGTTAGAGTTGGACGGCAAACCTTCGAAGGGAGAGAAGCCACGACAAGAGCACAATGAGCCTCGAAAGGGAGAAAAATCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTGGAGGTGGATGGCAAACCTTCCAAGGGAGAGAAGTCGCCACCAAAGCACAAACCACCTCATGAACACCAGTTGTTAGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCTCAAGAGCACAAAGAGCCTCGTAAGGGAGAGAAAACACCACCAAAACACAAGCCACCACATGAACACCAATTGTTAGAGTTGGATGGCAAACCATCCAAGGGAGAGAAGCCACCACAAGAGCACAATGGACCTCATAAGGGAGACAAGCCGCCACAAAAGCACAAGCCACCTCATGAACACCGCTTGTTAGAGACCGATGGAAAACCTTCCAAGGGAGAGAAGCCACCACAACAACACAATGAGCCTCATAAGGGAGAGAAGCCCCCACCAGAGCACAAACCAGGACATCCGGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAACCACAAACCACCTCATGAACAAAACACCGAACGCCGTTTGCTAGAGTCTTCTTCCACTGAGTTAGATGGTAAGTCTCCTGAAGGAAAGAAGCCACCCCCAAAACACAAGCCACCAACCCCACTTAACAAAAATGAAGAACATAAGCCATTCCCAGAACACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCACATCATGATCGTCACCTTGGAGACAATGCAGAGAAGGATGCCAAAGATTCACCACACAAGCCACCCCGGAAATTAAAGCCTCCTAGTACTGATCTTGCAAAGAAGCCTCCAACCGCCCCTCAAAAACCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

454

Amino Acids

51.12

Weight (kDa)

9.57

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	568
AciI	CCGC	5 cut(s)	88, 377, 833, 865, 1320
AcuI	CTGAAG	2 cut(s)	164, 1113
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	1 cut(s)	1294
AgeI	ACCGGT	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	964
AleI	CACNNNNGTG	1 cut(s)	993
Alw21I	GWGCWC	7 cut(s)	315, 333, 390, 504, 693, 807, 960
Alw26I	GTCTC	5 cut(s)	175, 819, 869, 1092, 1221
Alw44I	GTGCAC	1 cut(s)	311
ApaLI	GTGCAC	1 cut(s)	311
AsiGI	ACCGGT	1 cut(s)	307
Asp700I	GAANNNNTTC	2 cut(s)	661, 889
AspS9I	GGNCC	1 cut(s)	812
AsuC2I	CCSGG	2 cut(s)	975, 1273
AsuHPI	GGTGA	7 cut(s)	77, 167, 408, 522, 1007, 1211, 1248
AsuII	TTCGAA	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	1053
Bbv12I	GWGCWC	7 cut(s)	315, 333, 390, 504, 693, 807, 960
BceAI	ACGGC	2 cut(s)	481, 1032
BciT130I	CCWGG	1 cut(s)	966
BclI	TGATCA	3 cut(s)	70, 82, 271
BcnI	CCSGG	2 cut(s)	975, 1273
BcoDI	GTCTC	5 cut(s)	175, 819, 869, 1092, 1221
BfaI	CTAG	2 cut(s)	1055, 1290
BisI	GCNGC	2 cut(s)	377, 833
BlsI	GCNGC	2 cut(s)	378, 834
BmcAI	AGTACT	1 cut(s)	1294
Bme1390I	CCNGG	3 cut(s)	966, 975, 1273
Bme18I	GGWCC	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	812
BmrFI	CCNGG	3 cut(s)	966, 975, 1273
BmsI	GCATC	3 cut(s)	388, 406, 1234
BpiI	GAAGAC	1 cut(s)	1053
Bpu14I	TTCGAA	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	669
BpuMI	CCSGG	2 cut(s)	975, 1273
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	7 cut(s)	363, 591, 666, 780, 894, 1222, 1271
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	7 cut(s)	363, 591, 666, 780, 894, 1222, 1271
BseGI	GGATG	8 cut(s)	118, 144, 583, 658, 772, 776, 970, 1249
BseMII	CTCAG	2 cut(s)	138, 1062
BseNI	ACTGG	1 cut(s)	637
BseSI	GKGCMC	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	307
BsiHKAI	GWGCWC	7 cut(s)	315, 333, 390, 504, 693, 807, 960
BsiSI	CCGG	3 cut(s)	308, 974, 1273
BsmAI	GTCTC	5 cut(s)	175, 819, 869, 1092, 1221
Bso31I	GGTCTC	1 cut(s)	869
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	7 cut(s)	315, 333, 390, 504, 693, 807, 960
Bsp143I	GATC	5 cut(s)	70, 82, 271, 1213, 1297
BspACI	CCGC	5 cut(s)	88, 377, 833, 865, 1320
BspCNI	CTCAG	2 cut(s)	137, 1063
BspHI	TCATGA	6 cut(s)	325, 439, 628, 856, 1027, 1210
BspT104I	TTCGAA	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	869
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	7 cut(s)	363, 591, 666, 780, 894, 1222, 1271
BssMI	GATC	5 cut(s)	70, 82, 271, 1213, 1297
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	6 cut(s)	363, 591, 666, 780, 894, 1222
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	124, 1071
BstF5I	GGATG	8 cut(s)	118, 144, 583, 658, 772, 776, 970, 1249
BstKTI	GATC	5 cut(s)	73, 85, 274, 1216, 1300
BstMAI	GTCTC	5 cut(s)	175, 819, 869, 1092, 1221
BstMBI	GATC	5 cut(s)	70, 82, 271, 1213, 1297
BstMWI	GCNNNNNNNGC	6 cut(s)	385, 394, 508, 613, 697, 841
BstNI	CCWGG	1 cut(s)	966
BstSCI	CCNGG	3 cut(s)	964, 973, 1271
BstSLI	GKGCMC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	1053
BtsCI	GGATG	8 cut(s)	118, 144, 583, 658, 772, 776, 970, 1249
BtsIMutI	CAGTG	1 cut(s)	1068
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	6 cut(s)	325, 439, 628, 856, 1027, 1210
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	812
Csp6I	GTAC	1 cut(s)	1293
CspAI	ACCGGT	1 cut(s)	307
CviAII	CATG	9 cut(s)	160, 326, 440, 554, 629, 743, 857, 1028, 1211
CviQI	GTAC	1 cut(s)	1293
DdeI	CTNAG	2 cut(s)	124, 1071
DpnI	GATC	5 cut(s)	72, 84, 273, 1215, 1299
DpnII	GATC	5 cut(s)	70, 82, 271, 1213, 1297
DraIII	CACNNNGTG	1 cut(s)	163
Eco130I	CCWWGG	6 cut(s)	363, 591, 666, 780, 894, 1222
Eco31I	GGTCTC	1 cut(s)	869
Eco47I	GGWCC	1 cut(s)	812
Eco57I	CTGAAG	2 cut(s)	164, 1113
EcoRII	CCWGG	1 cut(s)	964
EcoT14I	CCWWGG	6 cut(s)	363, 591, 666, 780, 894, 1222
ErhI	CCWWGG	6 cut(s)	363, 591, 666, 780, 894, 1222
FaeI	CATG	9 cut(s)	163, 329, 443, 557, 632, 746, 860, 1031, 1214
FatI	CATG	9 cut(s)	159, 325, 439, 553, 628, 742, 856, 1027, 1210
FbaI	TGATCA	3 cut(s)	70, 82, 271
Fnu4HI	GCNGC	2 cut(s)	377, 833
FokI	GGATG	8 cut(s)	105, 131, 590, 665, 763, 779, 957, 1256
Fsp4HI	GCNGC	2 cut(s)	377, 833
FspBI	CTAG	2 cut(s)	1055, 1290
GluI	GCNGC	2 cut(s)	377, 833
HapII	CCGG	3 cut(s)	308, 974, 1273
Hin1II	CATG	9 cut(s)	163, 329, 443, 557, 632, 746, 860, 1031, 1214
HinfI	GANTC	3 cut(s)	100, 1058, 1253
HpaII	CCGG	3 cut(s)	308, 974, 1273
HphI	GGTGA	7 cut(s)	77, 167, 408, 522, 1007, 1211, 1248
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	127, 183
Hpy8I	GTNNAC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	3 cut(s)	313, 1235, 1304
HpyF10VI	GCNNNNNNNGC	6 cut(s)	385, 394, 508, 613, 697, 841
HpyF3I	CTNAG	2 cut(s)	124, 1071
Hsp92II	CATG	9 cut(s)	163, 329, 443, 557, 632, 746, 860, 1031, 1214
Ksp22I	TGATCA	3 cut(s)	70, 82, 271
Kzo9I	GATC	5 cut(s)	70, 82, 271, 1213, 1297
LweI	GCATC	3 cut(s)	388, 406, 1234
MaeI	CTAG	2 cut(s)	1055, 1290
MaeIII	GTNAC	2 cut(s)	414, 1217
MalI	GATC	5 cut(s)	72, 84, 273, 1215, 1299
MboI	GATC	5 cut(s)	70, 82, 271, 1213, 1297
MboII	GAAGA	4 cut(s)	20, 1053, 1056, 1160
MfeI	CAATTG	3 cut(s)	449, 563, 752
MhlI	GDGCHC	7 cut(s)	315, 333, 390, 504, 693, 807, 960
MluCI	AATT	4 cut(s)	449, 563, 752, 1277
MlyI	GAGTC	1 cut(s)	1067
MmeI	TCCRAC	7 cut(s)	33, 239, 441, 549, 630, 744, 1340
MroXI	GAANNNNTTC	2 cut(s)	661, 889
MseI	TTAA	3 cut(s)	224, 1137, 1280
MslI	CAYNNNNRTG	1 cut(s)	993
MspI	CCGG	3 cut(s)	308, 974, 1273
MspR9I	CCNGG	3 cut(s)	966, 975, 1273
MunI	CAATTG	3 cut(s)	449, 563, 752
MvaI	CCWGG	1 cut(s)	966
MwoI	GCNNNNNNNGC	6 cut(s)	385, 394, 508, 613, 697, 841
NciI	CCSGG	2 cut(s)	975, 1273
NdeII	GATC	5 cut(s)	70, 82, 271, 1213, 1297
NlaIII	CATG	9 cut(s)	163, 329, 443, 557, 632, 746, 860, 1031, 1214
NmuCI	GTSAC	2 cut(s)	414, 1217
NspV	TTCGAA	1 cut(s)	476
OliI	CACNNNNGTG	1 cut(s)	993
PagI	TCATGA	6 cut(s)	325, 439, 628, 856, 1027, 1210
PdmI	GAANNNNTTC	2 cut(s)	661, 889
PfeI	GAWTC	2 cut(s)	100, 1253
PflMI	CCANNNNNTGG	1 cut(s)	568
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	378, 834
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
Psp6I	CCWGG	1 cut(s)	964
PspGI	CCWGG	1 cut(s)	964
PspPI	GGNCC	1 cut(s)	812
RsaI	GTAC	1 cut(s)	1294
RsaNI	GTAC	1 cut(s)	1293
RseI	CAYNNNNRTG	1 cut(s)	993
SaqAI	TTAA	3 cut(s)	224, 1137, 1280
SatI	GCNGC	2 cut(s)	377, 833
Sau3AI	GATC	5 cut(s)	70, 82, 271, 1213, 1297
Sau96I	GGNCC	1 cut(s)	812
ScaI	AGTACT	1 cut(s)	1294
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	3 cut(s)	966, 975, 1273
SduI	GDGCHC	7 cut(s)	315, 333, 390, 504, 693, 807, 960
SfaNI	GCATC	3 cut(s)	388, 406, 1234
SfuI	TTCGAA	1 cut(s)	476
SgrAI	CRCCGGYG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	812
SmiMI	CAYNNNNRTG	1 cut(s)	993
SmlI	CTYRAG	1 cut(s)	684
SmoI	CTYRAG	1 cut(s)	684
Sse9I	AATT	4 cut(s)	449, 563, 752, 1277
SsiI	CCGC	5 cut(s)	88, 377, 833, 865, 1320
SspMI	CTAG	2 cut(s)	1055, 1290
StyD4I	CCNGG	3 cut(s)	964, 973, 1271
StyI	CCWWGG	6 cut(s)	363, 591, 666, 780, 894, 1222
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	476, 514
TaqII	GACCGA	1 cut(s)	893
TasI	AATT	4 cut(s)	449, 563, 752, 1277
TatI	WGTACW	1 cut(s)	1292
TauI	GCSGC	2 cut(s)	379, 835
TfiI	GAWTC	2 cut(s)	100, 1253
Tru1I	TTAA	3 cut(s)	224, 1137, 1280
Tru9I	TTAA	3 cut(s)	224, 1137, 1280
TscAI	CASTG	1 cut(s)	1075
TseFI	GTSAC	2 cut(s)	414, 1217
Tsp45I	GTSAC	2 cut(s)	414, 1217
TspDTI	ATGAA	8 cut(s)	456, 570, 645, 759, 873, 996, 1044, 1161
TspRI	CASTG	1 cut(s)	1075
Van91I	CCANNNNNTGG	1 cut(s)	568
VneI	GTGCAC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	812
XmnI	GAANNNNTTC	2 cut(s)	661, 889
XspI	CTAG	2 cut(s)	1055, 1290
ZrmI	AGTACT	1 cut(s)	1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.