Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

978355 .. 979563

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCCTTCCAACTATTTGCTTCTGTTTCTCCTTGGAGTGGTCGTTTCCACTACTACTCCCTCTTTTGCTGATCACCGCGATGATCACCACAAACCACCTTTTCATAAGCCCCCTTCTCATCCATCGGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCCCCTTCAGAAGTCACCACAACCACCCAAACACATGCCTCCAACCACATTAAGCAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGCATGTTGGAGATCGATGGAAAACCTTCTAAGGGAGAGAAATCGCCACGAGAGCACAATGAGCCGCATAAGGGAGAAAAGCCACCACTGGAGCACAAAGGAAATCCAGGCGAGCAACCTCACAAGCATCATGAGCACAAACCTCCCCATGAACAAAACGTTGGACGTCGTTTGTTAGAGTCATCTTCCTCAGAGTTGGATGGTAAGCCACCAAAGGGTAAAAATTCTCCACCGAAACGCATACCACCTCATGAACACCAATTGTTGGAGTTGGATGGAAAACCTGCCGAGGGAGAGAAGCCACCACCAAAGCATAAGCCACCACATGAACACCAGTTGTTCGAGTTGGATGGAAAACCTACCAAGGGAGAGAAGCCACCACAAGAGCACAATGGACCTCACAAGGGAGAGAAGCCATCACCAAAGCATAAGCCACCTCATGACCACCAGTTGTTGGAGTTGGATGGAAAACCTTCCAAGGGAAAGGAGCCACCGCAAGACCACAATGAGGCTCATAAGGGTGAGAAACCACCACGAAAGCACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATGGCAAACCTTCCAAGGGAAAGGAGCCACCGCAAGACCACAATGAGGCTCATAAGGGTGAGAAACCACCACGAAAGCACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATGGCAAACCTTCCAAGGGAGAGAAGCCACCACAAAAACACAAGCCACCTCATAAACACCGCTTGTTAGAGACTGATGGAAAACCTTCCAAGGGAGAAGAGCCTGATAACGGAGCGAATCCAAAAACAAACATGCCATATGAGAAGCCTCCAACTTCCTCTCACAAACCACCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

402

Amino Acids

45.32

Weight (kDa)

9.28

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	625
AccB7I	CCANNNNNTGG	2 cut(s)	598, 787
AccII	CGCG	1 cut(s)	78
AciI	CCGC	6 cut(s)	76, 334, 398, 827, 941, 1084
AclI	AACGTT	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	164
AcvI	CACGTG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
Alw21I	GWGCWC	7 cut(s)	252, 315, 333, 390, 429, 471, 723
Alw26I	GTCTC	2 cut(s)	175, 1088
Ama87I	CYCGRG	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	556
Asp700I	GAANNNNTTC	3 cut(s)	358, 805, 1108
AspS9I	GGNCC	2 cut(s)	127, 728
AsuHPI	GGTGA	6 cut(s)	65, 77, 180, 744, 866, 980
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	127, 728
BauI	CACGAG	1 cut(s)	381
BbrPI	CACGTG	1 cut(s)	269
Bbv12I	GWGCWC	7 cut(s)	252, 315, 333, 390, 429, 471, 723
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	3 cut(s)	70, 82, 271
BcoDI	GTCTC	2 cut(s)	175, 1088
BfuAI	ACCTGC	1 cut(s)	625
BisI	GCNGC	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	2 cut(s)	127, 728
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	127, 728
BmiI	GGNNCC	2 cut(s)	822, 936
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	499
BsaJI	CCNNGG	8 cut(s)	31, 159, 621, 696, 810, 924, 1038, 1113
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
Bse1I	ACTGG	3 cut(s)	426, 667, 781
BseBI	CCWGG	1 cut(s)	441
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	8 cut(s)	31, 159, 621, 696, 810, 924, 1038, 1113
BseGI	GGATG	8 cut(s)	118, 144, 538, 613, 688, 802, 916, 1030
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	3 cut(s)	426, 667, 781
Bsh1236I	CGCG	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	7 cut(s)	252, 315, 333, 390, 429, 471, 723
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	308
BsmAI	GTCTC	2 cut(s)	175, 1088
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	7 cut(s)	252, 315, 333, 390, 429, 471, 723
Bsp143I	GATC	4 cut(s)	70, 82, 271, 345
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	6 cut(s)	76, 334, 398, 827, 941, 1084
BspCNI	CTCAG	1 cut(s)	536
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	4 cut(s)	325, 463, 583, 772
BspLI	GGNNCC	2 cut(s)	822, 936
BspMI	ACCTGC	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	1116
BsrI	ACTGG	3 cut(s)	426, 667, 781
BssECI	CCNNGG	8 cut(s)	31, 159, 621, 696, 810, 924, 1038, 1113
BssMI	GATC	4 cut(s)	70, 82, 271, 345
BssNI	GRCGYC	1 cut(s)	499
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	7 cut(s)	31, 159, 696, 810, 924, 1038, 1113
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	1116
BstACI	GRCGYC	1 cut(s)	499
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	230, 446
BstDEI	CTNAG	2 cut(s)	363, 523
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	8 cut(s)	118, 144, 538, 613, 688, 802, 916, 1030
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	73, 85, 274, 348
BstMAI	GTCTC	2 cut(s)	175, 1088
BstMBI	GATC	4 cut(s)	70, 82, 271, 345
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 394, 466
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	3 cut(s)	211, 340, 1159
BstSCI	CCNGG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	8 cut(s)	118, 144, 538, 613, 688, 802, 916, 1030
BtsIMutI	CAGTG	1 cut(s)	419
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	2 cut(s)	230, 446
CciI	TCATGA	4 cut(s)	325, 463, 583, 772
Cfr13I	GGNCC	2 cut(s)	127, 728
ClaI	ATCGAT	1 cut(s)	348
DdeI	CTNAG	2 cut(s)	363, 523
DpnI	GATC	4 cut(s)	72, 84, 273, 347
DpnII	GATC	4 cut(s)	70, 82, 271, 345
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
Eco130I	CCWWGG	7 cut(s)	31, 159, 696, 810, 924, 1038, 1113
Eco47I	GGWCC	2 cut(s)	127, 728
Eco57I	CTGAAG	1 cut(s)	164
Eco72I	CACGTG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	7 cut(s)	31, 159, 696, 810, 924, 1038, 1113
ErhI	CCWWGG	7 cut(s)	31, 159, 696, 810, 924, 1038, 1113
FauNDI	CATATG	1 cut(s)	1162
FbaI	TGATCA	3 cut(s)	70, 82, 271
Fnu4HI	GCNGC	1 cut(s)	398
FokI	GGATG	8 cut(s)	105, 131, 545, 620, 695, 809, 923, 1037
Fsp4HI	GCNGC	1 cut(s)	398
GluI	GCNGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	443
HapII	CCGG	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	512, 1141
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	6 cut(s)	65, 77, 180, 744, 866, 980
Hpy188I	TCNGA	3 cut(s)	127, 183, 526
Hpy188III	TCNNGA	4 cut(s)	326, 464, 584, 773
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	8 cut(s)	15, 123, 188, 369, 816, 930, 1044, 1119
HpyCH4IV	ACGT	3 cut(s)	268, 492, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 394, 466
HpyF3I	CTNAG	2 cut(s)	363, 523
HpySE526I	ACGT	3 cut(s)	268, 492, 499
Hsp92I	GRCGYC	1 cut(s)	499
Ksp22I	TGATCA	3 cut(s)	70, 82, 271
Kzo9I	GATC	4 cut(s)	70, 82, 271, 345
LguI	GCTCTTC	1 cut(s)	1116
LmnI	GCTCC	5 cut(s)	310, 424, 820, 934, 1136
LpnPI	CCDG	8 cut(s)	321, 407, 426, 453, 630, 680, 794, 1140
LweI	GCATC	1 cut(s)	469
MaeII	ACGT	3 cut(s)	268, 492, 499
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	4 cut(s)	72, 84, 273, 347
MboI	GATC	4 cut(s)	70, 82, 271, 345
MboII	GAAGA	2 cut(s)	510, 1133
MfeI	CAATTG	3 cut(s)	593, 896, 1010
MhlI	GDGCHC	7 cut(s)	252, 315, 333, 390, 429, 471, 723
MluCI	AATT	4 cut(s)	556, 593, 896, 1010
MlyI	GAGTC	1 cut(s)	521
MroXI	GAANNNNTTC	3 cut(s)	358, 805, 1108
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	3 cut(s)	78, 852, 966
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	441
MunI	CAATTG	3 cut(s)	593, 896, 1010
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	385, 394, 466
NcoI	CCATGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	1162
NdeII	GATC	4 cut(s)	70, 82, 271, 345
NlaIV	GGNNCC	2 cut(s)	822, 936
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	1 cut(s)	186
NspI	RCATGY	3 cut(s)	211, 340, 1159
PagI	TCATGA	4 cut(s)	325, 463, 583, 772
PciSI	GCTCTTC	1 cut(s)	1116
PdmI	GAANNNNTTC	3 cut(s)	358, 805, 1108
PfeI	GAWTC	1 cut(s)	1141
PflMI	CCANNNNNTGG	2 cut(s)	598, 787
PkrI	GCNGC	1 cut(s)	399
PleI	GAGTC	1 cut(s)	520
PmaCI	CACGTG	1 cut(s)	269
PmlI	CACGTG	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	520
Ppu21I	YACGTR	1 cut(s)	269
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	439
PspCI	CACGTG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	822, 936
PspPI	GGNCC	2 cut(s)	127, 728
RseI	CAYNNNNRTG	3 cut(s)	78, 852, 966
SapI	GCTCTTC	1 cut(s)	1116
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	398
Sau3AI	GATC	4 cut(s)	70, 82, 271, 345
Sau96I	GGNCC	2 cut(s)	127, 728
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	7 cut(s)	252, 315, 333, 390, 429, 471, 723
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	2 cut(s)	127, 728
SmiMI	CAYNNNNRTG	3 cut(s)	78, 852, 966
Sse9I	AATT	4 cut(s)	556, 593, 896, 1010
SsiI	CCGC	6 cut(s)	76, 334, 398, 827, 941, 1084
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	7 cut(s)	31, 159, 696, 810, 924, 1038, 1113
TaiI	ACGT	3 cut(s)	271, 495, 502
TaqI	TCGA	2 cut(s)	348, 675
TasI	AATT	4 cut(s)	556, 593, 896, 1010
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	1141
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	6 cut(s)	92, 498, 600, 675, 903, 1017
TspGWI	ACGGA	1 cut(s)	1149
TspRI	CASTG	1 cut(s)	426
Van91I	CCANNNNNTGG	2 cut(s)	598, 787
VpaK11BI	GGWCC	2 cut(s)	127, 728
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	3 cut(s)	211, 340, 1159
XmnI	GAANNNNTTC	3 cut(s)	358, 805, 1108
ZraI	GACGTC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.