Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

7287714 .. 7289600

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGCCTTCCAACTATTTCCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTCTTGCTGATCAGCACGATGATCACCGCAAACCACCGATTCACAAGCCTCCTACCCATCCCTCAGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCATCTTCAGAAGTCACCACAACCCCCCAAACATAAGCCTCCAACGACATTAAGCAAGCAAGAGCCACTCCCTGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGTTTGTTAGAAACTGACGACAAACCTTCCAAGGGAGAGAAACCGCCGCAAGAGCACAATGAGCATCACAAGGGAGAAAAGTCACCACCAAAGCACAAGCCACCTCATGAACACCAATTGTTAGAGTTGGACGGCAAACCTTCGACGGGAGAGAAGCCACGACAAGAGCACAATGAGCCTCGAAAGGGAGAAAAATCACCACCAAACCACAAGCCACCACATGAACACCAATTGTTGGAGGTGGATGGCAAACCTTCCAAGGGAGAGAAGCCATCGCAAGAGCACAATGAGCCTCACAAGGGAGAGAAGTCGCCACCAAAGCACAAACCACCTCATGAACACCAGTTGTTAGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAACCACCTCAAGAGCACAAAGAGCCTCGTAAGGGAGAGAAAACACCACCAAAACACAAGCCACCACATGAACACCAATTGTTAGAGTTGGATGGCAAACCATCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAACCTCATAAGGGAGAGAAGCCGCCACAAAAGCACAAGCCACCTCATGAACACCGCTTGCTAGAGACTGATGGAAAACCTTCCAAGGGAGAGAAGCCACCACAACAACACAATGAGCCTCATAAGGGAGAGAAGCCCCCACCAGAGCACAAACCAGGACATCCGGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAACCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCCTCTTCCACTGAGTTAGATGGTAAGTCTCCTGAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGACAAAAATGATGATCACAAGCCATTTCCGGAACACATGCCACCAAAGGGTAAGGGAGAGAAGCCACCACATCACGACCGTCACCTTGGAGAGAATGCAGAGAAGGATGCCAGAGACCCACCGCACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCAAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

465

Amino Acids

52.54

Weight (kDa)

9.39

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccIII	TCCGGA	1 cut(s)	1204
AciI	CCGC	7 cut(s)	88, 377, 380, 872, 904, 1163, 1298
AcuI	CTGAAG	2 cut(s)	164, 1152
AcyI	GRCGYC	1 cut(s)	1084
AfaI	GTAC	1 cut(s)	1333
AjnI	CCWGG	1 cut(s)	1003
AleI	CACNNNNGTG	1 cut(s)	1032
Alw21I	GWGCWC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
Alw26I	GTCTC	4 cut(s)	175, 908, 1131, 1284
Aor13HI	TCCGGA	1 cut(s)	1204
Asp700I	GAANNNNTTC	2 cut(s)	700, 928
AsuC2I	CCSGG	1 cut(s)	1014
AsuHPI	GGTGA	6 cut(s)	77, 180, 408, 522, 1046, 1250
BauI	CACGAG	1 cut(s)	267
Bbv12I	GWGCWC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
BceAI	ACGGC	2 cut(s)	481, 1071
BciT130I	CCWGG	1 cut(s)	1005
BclI	TGATCA	4 cut(s)	70, 82, 271, 1189
BcnI	CCSGG	1 cut(s)	1014
BcoDI	GTCTC	4 cut(s)	175, 908, 1131, 1284
BfaI	CTAG	2 cut(s)	911, 1094
BisI	GCNGC	3 cut(s)	380, 872, 1163
BlsI	GCNGC	3 cut(s)	381, 873, 1164
BmcAI	AGTACT	1 cut(s)	1333
Bme1390I	CCNGG	2 cut(s)	1005, 1014
BmrFI	CCNGG	2 cut(s)	1005, 1014
BmsI	GCATC	2 cut(s)	406, 1273
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	1014
BsaHI	GRCGYC	1 cut(s)	1084
BsaI	GGTCTC	1 cut(s)	1284
BsaJI	CCNNGG	8 cut(s)	159, 363, 591, 705, 819, 933, 1261, 1310
BsaWI	WCCGGW	3 cut(s)	307, 1079, 1204
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
Bse1I	ACTGG	1 cut(s)	676
BseAI	TCCGGA	1 cut(s)	1204
BseBI	CCWGG	1 cut(s)	1005
BseDI	CCNNGG	8 cut(s)	159, 363, 591, 705, 819, 933, 1261, 1310
BseGI	GGATG	8 cut(s)	118, 144, 583, 697, 811, 815, 1009, 1288
BseMII	CTCAG	3 cut(s)	138, 237, 1101
BseNI	ACTGG	1 cut(s)	676
Bsh1285I	CGRYCG	1 cut(s)	1255
BsiEI	CGRYCG	1 cut(s)	1255
BsiHKAI	GWGCWC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
BsiSI	CCGG	4 cut(s)	308, 1013, 1080, 1205
BsmAI	GTCTC	4 cut(s)	175, 908, 1131, 1284
BsmI	GAATGC	1 cut(s)	1276
Bso31I	GGTCTC	1 cut(s)	1284
Bsp1286I	GDGCHC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
Bsp13I	TCCGGA	1 cut(s)	1204
Bsp143I	GATC	4 cut(s)	70, 82, 271, 1189
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	7 cut(s)	88, 377, 380, 872, 904, 1163, 1298
BspCNI	CTCAG	3 cut(s)	137, 238, 1102
BspEI	TCCGGA	1 cut(s)	1204
BspHI	TCATGA	5 cut(s)	325, 439, 667, 895, 1066
BspTNI	GGTCTC	1 cut(s)	1284
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	8 cut(s)	159, 363, 591, 705, 819, 933, 1261, 1310
BssMI	GATC	4 cut(s)	70, 82, 271, 1189
BssNI	GRCGYC	1 cut(s)	1084
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	1005
Bst4CI	ACNGT	3 cut(s)	335, 1256, 1336
Bst6I	CTCTTC	1 cut(s)	1108
BstACI	GRCGYC	1 cut(s)	1084
BstC8I	GCNNGC	2 cut(s)	230, 908
BstDEI	CTNAG	3 cut(s)	124, 246, 1110
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	8 cut(s)	118, 144, 583, 697, 811, 815, 1009, 1288
BstKTI	GATC	4 cut(s)	73, 85, 274, 1192
BstMAI	GTCTC	4 cut(s)	175, 908, 1131, 1284
BstMBI	GATC	4 cut(s)	70, 82, 271, 1189
BstMCI	CGRYCG	1 cut(s)	1255
BstMWI	GCNNNNNNNGC	7 cut(s)	385, 394, 508, 622, 652, 736, 880
BstNI	CCWGG	1 cut(s)	1005
BstNSI	RCATGY	1 cut(s)	1216
BstSCI	CCNGG	2 cut(s)	1003, 1012
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	8 cut(s)	118, 144, 583, 697, 811, 815, 1009, 1288
BtsIMutI	CAGTG	1 cut(s)	1107
Cac8I	GCNNGC	2 cut(s)	230, 908
CciI	TCATGA	5 cut(s)	325, 439, 667, 895, 1066
CseI	GACGC	1 cut(s)	1092
Csp6I	GTAC	1 cut(s)	1332
CviAII	CATG	9 cut(s)	160, 326, 440, 554, 668, 782, 896, 1067, 1213
CviQI	GTAC	1 cut(s)	1332
DdeI	CTNAG	3 cut(s)	124, 246, 1110
DpnI	GATC	4 cut(s)	72, 84, 273, 1191
DpnII	GATC	4 cut(s)	70, 82, 271, 1189
Eam1104I	CTCTTC	1 cut(s)	1108
EarI	CTCTTC	1 cut(s)	1108
Eco130I	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
Eco31I	GGTCTC	1 cut(s)	1284
Eco57I	CTGAAG	2 cut(s)	164, 1152
EcoRII	CCWGG	1 cut(s)	1003
EcoT14I	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
ErhI	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
FaeI	CATG	9 cut(s)	163, 329, 443, 557, 671, 785, 899, 1070, 1216
FatI	CATG	9 cut(s)	159, 325, 439, 553, 667, 781, 895, 1066, 1212
FbaI	TGATCA	4 cut(s)	70, 82, 271, 1189
Fnu4HI	GCNGC	3 cut(s)	380, 872, 1163
FokI	GGATG	8 cut(s)	105, 131, 590, 704, 802, 818, 996, 1295
Fsp4HI	GCNGC	3 cut(s)	380, 872, 1163
FspBI	CTAG	2 cut(s)	911, 1094
GluI	GCNGC	3 cut(s)	380, 872, 1163
HapII	CCGG	4 cut(s)	308, 1013, 1080, 1205
HgaI	GACGC	1 cut(s)	1092
Hin1I	GRCGYC	1 cut(s)	1084
Hin1II	CATG	9 cut(s)	163, 329, 443, 557, 671, 785, 899, 1070, 1216
HinfI	GANTC	2 cut(s)	100, 1097
HpaII	CCGG	4 cut(s)	308, 1013, 1080, 1205
HphI	GGTGA	6 cut(s)	77, 180, 408, 522, 1046, 1250
Hpy188I	TCNGA	3 cut(s)	127, 183, 1314
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	9 cut(s)	15, 29, 369, 483, 597, 711, 939, 1127, 1273
HpyCH4III	ACNGT	3 cut(s)	335, 1256, 1336
HpyCH4V	TGCA	2 cut(s)	1274, 1340
HpyF10VI	GCNNNNNNNGC	7 cut(s)	385, 394, 508, 622, 652, 736, 880
HpyF3I	CTNAG	3 cut(s)	124, 246, 1110
Hsp92I	GRCGYC	1 cut(s)	1084
Hsp92II	CATG	9 cut(s)	163, 329, 443, 557, 671, 785, 899, 1070, 1216
Kpn2I	TCCGGA	1 cut(s)	1204
Ksp22I	TGATCA	4 cut(s)	70, 82, 271, 1189
Kzo9I	GATC	4 cut(s)	70, 82, 271, 1189
LmnI	GCTCC	1 cut(s)	310
LweI	GCATC	2 cut(s)	406, 1273
MaeI	CTAG	2 cut(s)	911, 1094
MaeIII	GTNAC	3 cut(s)	186, 414, 1256
MalI	GATC	4 cut(s)	72, 84, 273, 1191
MboI	GATC	4 cut(s)	70, 82, 271, 1189
MboII	GAAGA	3 cut(s)	20, 170, 1095
MfeI	CAATTG	3 cut(s)	449, 563, 791
MhlI	GDGCHC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
MluCI	AATT	4 cut(s)	449, 563, 791, 1316
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	7 cut(s)	33, 239, 441, 549, 669, 783, 1376
MroI	TCCGGA	1 cut(s)	1204
MroXI	GAANNNNTTC	2 cut(s)	700, 928
MseI	TTAA	2 cut(s)	224, 1319
MslI	CAYNNNNRTG	1 cut(s)	1032
MspI	CCGG	4 cut(s)	308, 1013, 1080, 1205
MspR9I	CCNGG	2 cut(s)	1005, 1014
MunI	CAATTG	3 cut(s)	449, 563, 791
Mva1269I	GAATGC	1 cut(s)	1276
MvaI	CCWGG	1 cut(s)	1005
MwoI	GCNNNNNNNGC	7 cut(s)	385, 394, 508, 622, 652, 736, 880
NciI	CCSGG	1 cut(s)	1014
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	70, 82, 271, 1189
NlaIII	CATG	9 cut(s)	163, 329, 443, 557, 671, 785, 899, 1070, 1216
NmuCI	GTSAC	3 cut(s)	186, 414, 1256
NspI	RCATGY	1 cut(s)	1216
OliI	CACNNNNGTG	1 cut(s)	1032
PagI	TCATGA	5 cut(s)	325, 439, 667, 895, 1066
PctI	GAATGC	1 cut(s)	1276
PdmI	GAANNNNTTC	2 cut(s)	700, 928
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	3 cut(s)	381, 873, 1164
PleI	GAGTC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	1105
Psp6I	CCWGG	1 cut(s)	1003
PspGI	CCWGG	1 cut(s)	1003
RsaI	GTAC	1 cut(s)	1333
RsaNI	GTAC	1 cut(s)	1332
RseI	CAYNNNNRTG	1 cut(s)	1032
SaqAI	TTAA	2 cut(s)	224, 1319
SatI	GCNGC	3 cut(s)	380, 872, 1163
Sau3AI	GATC	4 cut(s)	70, 82, 271, 1189
ScaI	AGTACT	1 cut(s)	1333
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	2 cut(s)	1005, 1014
SduI	GDGCHC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
SfaNI	GCATC	2 cut(s)	406, 1273
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	4 cut(s)	449, 563, 791, 1316
SsiI	CCGC	7 cut(s)	88, 377, 380, 872, 904, 1163, 1298
SspMI	CTAG	2 cut(s)	911, 1094
StyD4I	CCNGG	2 cut(s)	1003, 1012
StyI	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
TaaI	ACNGT	3 cut(s)	335, 1256, 1336
TaqI	TCGA	2 cut(s)	476, 514
TasI	AATT	4 cut(s)	449, 563, 791, 1316
TatI	WGTACW	1 cut(s)	1331
TauI	GCSGC	3 cut(s)	382, 874, 1165
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	224, 1319
Tru9I	TTAA	2 cut(s)	224, 1319
TscAI	CASTG	1 cut(s)	1114
TseFI	GTSAC	3 cut(s)	186, 414, 1256
Tsp45I	GTSAC	3 cut(s)	186, 414, 1256
TspDTI	ATGAA	8 cut(s)	456, 570, 684, 798, 864, 912, 1035, 1083
TspRI	CASTG	1 cut(s)	1114
Van91I	CCANNNNNTGG	1 cut(s)	568
XceI	RCATGY	1 cut(s)	1216
XmnI	GAANNNNTTC	2 cut(s)	700, 928
XspI	CTAG	2 cut(s)	911, 1094
ZrmI	AGTACT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.