Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

7071785 .. 7073093

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTCTTCCAATTACTTGCTTGTATTTCTTATTGGAGTGGTGGCTTTCACTACCGCTTCCACTCTTGCTGATCACCATGATCATCACAAACCACCCGTTCACAAGCCTCCCGTTGTAGAAATCTCCCACCTCCAAAAGCCACCAACCTCACATGATCAACCCCCTAAGGGTAAGGGGGAGAAGCCACCACCCGAGAAAAAGCCACCCCATGAACACCGTTTGTTGGAGTCAGATGGAAGAACTTTTAAGGGAGAGAAACCGCCACAAGAGCATAACGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCACCTCATGAACATCGCTTGTTAGAGACTGATGGCAAACCTTGCAAAGGAGAGAAGCCACCAAAGGATTGTGATTGTGATGAGCCATGTAAAAGAGGGAAGCCAACACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGACTGATGACAAACCTTCCAAAGGAGAGAAGTCTCCAAAGGAGCACAATGAACCTCGTAAAGGAGAGAAGCCACCACCTAAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGAATCCACCGAGAGAGCACAATGAGCCTCGTAAGGGAGAAAAGGCACCACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGAATCCACCGAGAGAGCACAATGAGCCTCGTAAGGGAGAAAAGCCACCACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGGATCCACCAAGAGAGCACAATGAACCTCGTAAGGGAGAAAAGCCACCACCAGAGCATAAACCGGAAAATCCAGGGGATCAACCTCACAAGGGTCATGAGAAGCCACCACCAGAGCACAAGCCTCCCCATGAACAAAACGTAGGACGTCGTTTGTTGGAGTCTTCTTCCTTGGAGTTGGCTGGTAAACCTCCCAAAGGAAAGAAGCCACCCCCAGAGCACAAGCCACCAACCACACTTGATAATAAAGATGTAGATCATAAGCAATTCCCAGACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCTCAGCATGATCGTCACCTTGGAGAAAATGTGGAAGAGGATGCAAAAAACCCACCGCAGACGTCACATCGGAAATTAAAACAGCCTCCAAGTACTCTTGCAAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCATAAACCTCCATCTTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

430

Amino Acids

48.5

Weight (kDa)

8.94

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	979, 1199
AccB1I	GGYRCC	1 cut(s)	646
AciI	CCGC	7 cut(s)	54, 260, 451, 565, 679, 793, 1190
AclWI	GGATC	3 cut(s)	827, 840, 915
AcyI	GRCGYC	2 cut(s)	976, 1196
AfaI	GTAC	1 cut(s)	1228
AjnI	CCWGG	1 cut(s)	901
Alw26I	GTCTC	3 cut(s)	335, 455, 498
AlwI	GGATC	3 cut(s)	827, 840, 915
Ama87I	CYCGRG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	65, 1142
AvaI	CYCGRG	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	984
BbvCI	CCTCAGC	1 cut(s)	1137
BccI	CCATC	6 cut(s)	227, 341, 575, 689, 803, 1288
BciT130I	CCWGG	1 cut(s)	903
BclI	TGATCA	3 cut(s)	70, 79, 154
BcoDI	GTCTC	3 cut(s)	335, 455, 498
BmcAI	AGTACT	1 cut(s)	1228
Bme1390I	CCNGG	1 cut(s)	903
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	648, 834
BmrFI	CCNGG	1 cut(s)	903
BmsI	GCATC	1 cut(s)	1165
BpiI	GAAGAC	1 cut(s)	984
Bpu10I	CCTNAGC	2 cut(s)	540, 1137
BsaBI	GATNNNNATC	1 cut(s)	1083
BsaHI	GRCGYC	2 cut(s)	976, 1196
BsaJI	CCNNGG	6 cut(s)	594, 708, 822, 902, 999, 1153
BsaWI	WCCGGW	1 cut(s)	892
BsaXI	ACNNNNNCTCC	2 cut(s)	1149, 1179
Bse21I	CCTNAGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	1083
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	6 cut(s)	594, 708, 822, 902, 999, 1153
BseGI	GGATG	1 cut(s)	1180
BseJI	GATNNNNATC	1 cut(s)	1083
BseMII	CTCAG	1 cut(s)	1151
BshNI	GGYRCC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	893
BsmAI	GTCTC	3 cut(s)	335, 455, 498
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
BspACI	CCGC	7 cut(s)	54, 260, 451, 565, 679, 793, 1190
BspCNI	CTCAG	1 cut(s)	1150
BspHI	TCATGA	6 cut(s)	322, 442, 556, 670, 784, 925
BspLI	GGNNCC	2 cut(s)	648, 834
BspPI	GGATC	3 cut(s)	827, 840, 915
BspT107I	GGYRCC	1 cut(s)	646
BssECI	CCNNGG	6 cut(s)	594, 708, 822, 902, 999, 1153
BssMI	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
BssNI	GRCGYC	2 cut(s)	976, 1196
BssT1I	CCWWGG	5 cut(s)	594, 708, 822, 999, 1153
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	1164
BstACI	GRCGYC	2 cut(s)	976, 1196
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	165, 540, 1137
BstENI	CCTNNNNNAGG	4 cut(s)	360, 480, 519, 1023
BstF5I	GGATG	1 cut(s)	1180
BstKTI	GATC	7 cut(s)	73, 82, 157, 835, 910, 1087, 1147
BstMAI	GTCTC	3 cut(s)	335, 455, 498
BstMBI	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
BstMWI	GCNNNNNNNGC	6 cut(s)	268, 277, 357, 625, 739, 1138
BstNI	CCWGG	1 cut(s)	903
BstSCI	CCNGG	1 cut(s)	901
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
Bsu36I	CCTNAGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	1180
CciI	TCATGA	6 cut(s)	322, 442, 556, 670, 784, 925
Csp6I	GTAC	1 cut(s)	1227
CviQI	GTAC	1 cut(s)	1227
DdeI	CTNAG	3 cut(s)	165, 540, 1137
DpnI	GATC	7 cut(s)	72, 81, 156, 834, 909, 1086, 1146
DpnII	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
Eam1104I	CTCTTC	1 cut(s)	1164
EarI	CTCTTC	1 cut(s)	1164
Eco130I	CCWWGG	5 cut(s)	594, 708, 822, 999, 1153
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	4 cut(s)	360, 480, 519, 1023
EcoRII	CCWGG	1 cut(s)	901
EcoT14I	CCWWGG	5 cut(s)	594, 708, 822, 999, 1153
ErhI	CCWWGG	5 cut(s)	594, 708, 822, 999, 1153
FbaI	TGATCA	3 cut(s)	70, 79, 154
FokI	GGATG	1 cut(s)	1187
HapII	CCGG	1 cut(s)	893
Hin1I	GRCGYC	2 cut(s)	976, 1196
HinfI	GANTC	4 cut(s)	227, 604, 718, 989
HpaII	CCGG	1 cut(s)	893
HphI	GGTGA	2 cut(s)	65, 1142
Hpy166II	GTNNAC	2 cut(s)	100, 1016
Hpy188I	TCNGA	3 cut(s)	232, 1206, 1288
Hpy188III	TCNNGA	6 cut(s)	323, 443, 557, 671, 785, 926
Hpy8I	GTNNAC	2 cut(s)	100, 1016
Hpy99I	CGWCG	1 cut(s)	981
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	3 cut(s)	969, 976, 1196
HpyCH4V	TGCA	3 cut(s)	360, 1178, 1235
HpyF10VI	GCNNNNNNNGC	6 cut(s)	268, 277, 357, 625, 739, 1138
HpyF3I	CTNAG	3 cut(s)	165, 540, 1137
HpySE526I	ACGT	3 cut(s)	969, 976, 1196
Hsp92I	GRCGYC	2 cut(s)	976, 1196
Ksp22I	TGATCA	3 cut(s)	70, 79, 154
Kzo9I	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
LmnI	GCTCC	1 cut(s)	502
LweI	GCATC	1 cut(s)	1165
MaeII	ACGT	3 cut(s)	969, 976, 1196
MaeIII	GTNAC	2 cut(s)	1148, 1197
MalI	GATC	7 cut(s)	72, 81, 156, 834, 909, 1086, 1146
MboI	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
MboII	GAAGA	5 cut(s)	249, 984, 987, 1181, 1275
MflI	RGATCY	1 cut(s)	832
MluCI	AATT	3 cut(s)	10, 1094, 1208
MlyI	GAGTC	2 cut(s)	236, 998
MmeI	TCCRAC	3 cut(s)	204, 966, 1271
MseI	TTAA	2 cut(s)	246, 1211
MspI	CCGG	1 cut(s)	893
MspR9I	CCNGG	1 cut(s)	903
MvaI	CCWGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	6 cut(s)	268, 277, 357, 625, 739, 1138
NdeII	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
NlaIV	GGNNCC	2 cut(s)	648, 834
NmuCI	GTSAC	2 cut(s)	1148, 1197
PagI	TCATGA	6 cut(s)	322, 442, 556, 670, 784, 925
PfeI	GAWTC	2 cut(s)	604, 718
PleI	GAGTC	2 cut(s)	235, 997
PpsI	GAGTC	2 cut(s)	235, 997
Psp6I	CCWGG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	2 cut(s)	648, 834
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	1 cut(s)	1228
RsaNI	GTAC	1 cut(s)	1227
SaqAI	TTAA	2 cut(s)	246, 1211
Sau3AI	GATC	7 cut(s)	70, 79, 154, 832, 907, 1084, 1144
ScaI	AGTACT	1 cut(s)	1228
SchI	GAGTC	2 cut(s)	236, 998
ScrFI	CCNGG	1 cut(s)	903
SfaNI	GCATC	1 cut(s)	1165
Sse9I	AATT	3 cut(s)	10, 1094, 1208
SsiI	CCGC	7 cut(s)	54, 260, 451, 565, 679, 793, 1190
StyD4I	CCNGG	1 cut(s)	901
StyI	CCWWGG	5 cut(s)	594, 708, 822, 999, 1153
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	3 cut(s)	972, 979, 1199
TasI	AATT	3 cut(s)	10, 1094, 1208
TatI	WGTACW	1 cut(s)	1226
TfiI	GAWTC	2 cut(s)	604, 718
Tru1I	TTAA	2 cut(s)	246, 1211
Tru9I	TTAA	2 cut(s)	246, 1211
TseFI	GTSAC	2 cut(s)	1148, 1197
Tsp45I	GTSAC	2 cut(s)	1148, 1197
TspDTI	ATGAA	9 cut(s)	225, 339, 459, 525, 573, 687, 801, 867, 975
XagI	CCTNNNNNAGG	4 cut(s)	360, 480, 519, 1023
ZraI	GACGTC	2 cut(s)	977, 1197
ZrmI	AGTACT	1 cut(s)	1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.