Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00544

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Forward (+)

74062 .. 75331

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCTTCCAATTACTTGCTTGTATTTCTTATTGGAGTGGTGGCTTTCACTACCGCTTCCACTCTTGCTGATCACCATGATCATCACAAACCACCCGTTCACAAGCCTCCCGTTGTAGAAATCTCTCACCTCGAAAAGCCACCAACCTCACATGATCAACTCCCTAAGGGTAAGGAGGAGAAGCCACCACCCGAGAAAAAGCCACCCCATGAACACCGTTTGTTGGAGTCAGATGGAAGAACTTTTAAGGGAGAGAAACCACCACAAGAGCATAACGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGAACAAACCACCTCATGAACATCGCTTGTTAGAGACTGATGACAAACCTTGCAAAGGAGAGAAGCTAACAAAGGATTGTGATTGTGATGAGCCATGTAAAAGAGGGAAGCCACCACCTAAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGAATCCACCGAGAGAGCACAATGAGCCTCGTAAGGGAGAAAAGCCACCACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGCAAACCTACCAAGGGAGAGGACCCACCAAGAGAGCACAATGAACCTCGTAAGGGAGAAAAGCCACCACCAGAGCATAAACCGGAAAATCCAGGGGATCAACCTCACAAGGGTCATGAGAAGCCACCACCAGAGCACAAGCCTCCCCATGAACAAAACGTAGGACGTCGTTTGTTGGAGTCTGCTTCCTTGGAGTTGGCTGGTAAACCTCCCAAAGGAAAGAAGCCGCCCCCAAAGCACAAGCCACCAACCACACTTGATAATAAAGATGTCGATCATAAGCAATTCCCAGACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCTCAGCATGATCGTCACCTTGGAGAAAATGTGGAAGAGGATGCAAAAAGCCCACCGCAGACGTCACATCGGAAATTAAAACAGCATCCAAGTACTCTTGCAAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCATAAACCTCCATCTTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

354

Amino Acids

39.9

Weight (kDa)

8.93

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	751, 971
AciI	CCGC	5 cut(s)	54, 451, 565, 809, 962
AclWI	GGATC	1 cut(s)	687
AcyI	GRCGYC	2 cut(s)	748, 968
AfaI	GTAC	1 cut(s)	1000
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw21I	GWGCWC	4 cut(s)	507, 546, 621, 720
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	687
Ama87I	CYCGRG	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	3 cut(s)	65, 119, 914
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	604
AxyI	CCTNAGG	1 cut(s)	165
Bbv12I	GWGCWC	4 cut(s)	507, 546, 621, 720
BbvCI	CCTCAGC	1 cut(s)	909
BccI	CCATC	4 cut(s)	227, 461, 575, 1060
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	3 cut(s)	70, 79, 154
BcoDI	GTCTC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	809
BlsI	GCNGC	1 cut(s)	810
BmcAI	AGTACT	1 cut(s)	1000
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	937, 1000
Bpu10I	CCTNAGC	2 cut(s)	426, 909
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	2 cut(s)	748, 968
BsaJI	CCNNGG	5 cut(s)	480, 594, 674, 771, 925
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bse21I	CCTNAGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	5 cut(s)	480, 594, 674, 771, 925
BseGI	GGATG	2 cut(s)	952, 991
BseJI	GATNNNNATC	1 cut(s)	855
BseMII	CTCAG	1 cut(s)	923
BseRI	GAGGAG	1 cut(s)	191
BsiHKAI	GWGCWC	4 cut(s)	507, 546, 621, 720
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	4 cut(s)	507, 546, 621, 720
Bsp143I	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
BspACI	CCGC	5 cut(s)	54, 451, 565, 809, 962
BspCNI	CTCAG	1 cut(s)	922
BspHI	TCATGA	4 cut(s)	322, 442, 556, 697
BspLI	GGNNCC	1 cut(s)	606
BspPI	GGATC	1 cut(s)	687
BssECI	CCNNGG	5 cut(s)	480, 594, 674, 771, 925
BssMI	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
BssNI	GRCGYC	2 cut(s)	748, 968
BssT1I	CCWWGG	4 cut(s)	480, 594, 771, 925
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	936
BstACI	GRCGYC	2 cut(s)	748, 968
BstDEI	CTNAG	3 cut(s)	165, 426, 909
BstENI	CCTNNNNNAGG	2 cut(s)	360, 795
BstF5I	GGATG	2 cut(s)	952, 991
BstKTI	GATC	6 cut(s)	73, 82, 157, 682, 859, 919
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
BstMWI	GCNNNNNNNGC	4 cut(s)	277, 511, 817, 910
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
Bsu36I	CCTNAGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	952, 991
CciI	TCATGA	4 cut(s)	322, 442, 556, 697
Cfr13I	GGNCC	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	999
CviQI	GTAC	1 cut(s)	999
DdeI	CTNAG	3 cut(s)	165, 426, 909
DpnI	GATC	6 cut(s)	72, 81, 156, 681, 858, 918
DpnII	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Eco130I	CCWWGG	4 cut(s)	480, 594, 771, 925
Eco47I	GGWCC	1 cut(s)	604
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	2 cut(s)	360, 795
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	4 cut(s)	480, 594, 771, 925
ErhI	CCWWGG	4 cut(s)	480, 594, 771, 925
FbaI	TGATCA	3 cut(s)	70, 79, 154
Fnu4HI	GCNGC	1 cut(s)	809
FokI	GGATG	2 cut(s)	959, 978
Fsp4HI	GCNGC	1 cut(s)	809
GluI	GCNGC	1 cut(s)	809
HapII	CCGG	1 cut(s)	665
Hin1I	GRCGYC	2 cut(s)	748, 968
HinfI	GANTC	3 cut(s)	227, 490, 761
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	3 cut(s)	65, 119, 914
Hpy166II	GTNNAC	2 cut(s)	100, 788
Hpy188I	TCNGA	3 cut(s)	232, 978, 1060
Hpy188III	TCNNGA	4 cut(s)	323, 443, 557, 698
Hpy8I	GTNNAC	2 cut(s)	100, 788
Hpy99I	CGWCG	1 cut(s)	753
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	3 cut(s)	741, 748, 968
HpyCH4V	TGCA	3 cut(s)	360, 950, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	277, 511, 817, 910
HpyF3I	CTNAG	3 cut(s)	165, 426, 909
HpySE526I	ACGT	3 cut(s)	741, 748, 968
Hsp92I	GRCGYC	2 cut(s)	748, 968
Ksp22I	TGATCA	3 cut(s)	70, 79, 154
Kzo9I	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
LpnPI	CCDG	9 cut(s)	318, 552, 660, 666, 678, 687, 726, 768, 885
LweI	GCATC	2 cut(s)	937, 1000
MaeII	ACGT	3 cut(s)	741, 748, 968
MaeIII	GTNAC	2 cut(s)	920, 969
MalI	GATC	6 cut(s)	72, 81, 156, 681, 858, 918
MboI	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
MboII	GAAGA	3 cut(s)	249, 953, 1047
MhlI	GDGCHC	4 cut(s)	507, 546, 621, 720
MluCI	AATT	3 cut(s)	10, 866, 980
MlyI	GAGTC	2 cut(s)	236, 770
MmeI	TCCRAC	3 cut(s)	204, 738, 1043
MseI	TTAA	2 cut(s)	246, 983
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	4 cut(s)	277, 511, 817, 910
NdeII	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	2 cut(s)	920, 969
PagI	TCATGA	4 cut(s)	322, 442, 556, 697
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	810
PleI	GAGTC	2 cut(s)	235, 769
PpsI	GAGTC	2 cut(s)	235, 769
PpuMI	RGGWCCY	1 cut(s)	604
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	606
PspPI	GGNCC	1 cut(s)	604
PspPPI	RGGWCCY	1 cut(s)	604
RsaI	GTAC	1 cut(s)	1000
RsaNI	GTAC	1 cut(s)	999
SaqAI	TTAA	2 cut(s)	246, 983
SatI	GCNGC	1 cut(s)	809
Sau3AI	GATC	6 cut(s)	70, 79, 154, 679, 856, 916
Sau96I	GGNCC	1 cut(s)	604
ScaI	AGTACT	1 cut(s)	1000
SchI	GAGTC	2 cut(s)	236, 770
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	4 cut(s)	507, 546, 621, 720
SfaNI	GCATC	2 cut(s)	937, 1000
SinI	GGWCC	1 cut(s)	604
Sse9I	AATT	3 cut(s)	10, 866, 980
SsiI	CCGC	5 cut(s)	54, 451, 565, 809, 962
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	4 cut(s)	480, 594, 771, 925
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	3 cut(s)	744, 751, 971
TaqI	TCGA	2 cut(s)	132, 855
TasI	AATT	3 cut(s)	10, 866, 980
TatI	WGTACW	1 cut(s)	998
TauI	GCSGC	1 cut(s)	811
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	246, 983
Tru9I	TTAA	2 cut(s)	246, 983
TseFI	GTSAC	2 cut(s)	920, 969
Tsp45I	GTSAC	2 cut(s)	920, 969
TspDTI	ATGAA	6 cut(s)	225, 339, 459, 573, 639, 747
VpaK11BI	GGWCC	1 cut(s)	604
XagI	CCTNNNNNAGG	2 cut(s)	360, 795
ZraI	GACGTC	2 cut(s)	749, 969
ZrmI	AGTACT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.