Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

7054098 .. 7055759

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG039200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCCTTCCAACTATTTCCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTCTTGCTGATCAGCACGATGATCACCACAAACCACCGATTCACAAGCCTCCTACCCATCCCGCAGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCATCTTCAGAAGTCACCACAACCCCCCAAACATAAGCCTCCAACGACATTAAGCAATCAAGAGCCACTCCCTGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGTTTGTTAGAAACTGACGACAAACCGTCCAAGGGAGAGAAGCCGCCGCAAGAGCACAATGAGCATCACAAGGGAGAAAAGTCACCACCAAAGCATAAGCCACCACATGAACACCAATTGTTGGAGGTGGATGGCAAACCTTCCAAGGGAGAGAAGCCACGACAAGAGCACAATGAGCCTCACAAGGGAGAGAAGTCGCCACCGAAGCACAAACCACCTCATGAACACCAGTTGTTAGAGTTGGATGGCAAACCATCCAAGGGAGAGAAGCCACCGCAAGAGCACAATGGACCTCATAAGGGAGAGAAGCCGCCACAAAAGCACAAGCCACCTCATGAACACCGCTTGTTAGAGACTGATGGAAAACCTTCCAAGGGAGAGAAGCCACCACAACAACACAATGAGCCTCATAAGGGAGAGAAGCCCCCACCAGAGCACAAACCAGGACATCCGGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAACCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCCTCTTCCACTGAGTTAGATGGTAAGTCTCCTGAAGGAAAGAAGCCACCCCCAAAACACAAGCCACCAACCCCACTTAACAAAAATGAAGAACATAAGCCATTCCCAGAACACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCACATCATGATCGTCACCTTGGAGACAATGCAGAGAAGGATGCCAAAGAATCACCACACAAGCCACCCCGGAAATTAAAGCCTCCTAGTACTGTTGCAAAGAAGCCTCCAACTGCCCCTCAAAAACCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

43.76

Weight (kDa)

9.49

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	454
AciI	CCGC	6 cut(s)	123, 377, 380, 608, 644, 676
AcuI	CTGAAG	2 cut(s)	164, 924
AcyI	GRCGYC	1 cut(s)	856
AfaI	GTAC	1 cut(s)	1105
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	775
AleI	CACNNNNGTG	1 cut(s)	804
Alw21I	GWGCWC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
Alw26I	GTCTC	4 cut(s)	175, 680, 903, 1032
Asp700I	GAANNNNTTC	1 cut(s)	700
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	2 cut(s)	786, 1084
AsuHPI	GGTGA	6 cut(s)	77, 180, 408, 818, 1022, 1059
AvaII	GGWCC	1 cut(s)	623
BauI	CACGAG	1 cut(s)	267
Bbv12I	GWGCWC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
BccI	CCATC	9 cut(s)	126, 152, 265, 458, 572, 595, 686, 884, 1165
BceAI	ACGGC	1 cut(s)	843
BciT130I	CCWGG	1 cut(s)	777
BclI	TGATCA	3 cut(s)	70, 82, 271
BcnI	CCSGG	2 cut(s)	786, 1084
BcoDI	GTCTC	4 cut(s)	175, 680, 903, 1032
BfaI	CTAG	2 cut(s)	866, 1101
BisI	GCNGC	3 cut(s)	377, 380, 644
BlsI	GCNGC	3 cut(s)	378, 381, 645
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	3 cut(s)	777, 786, 1084
Bme18I	GGWCC	1 cut(s)	623
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	623
BmrFI	CCNGG	3 cut(s)	777, 786, 1084
BmsI	GCATC	2 cut(s)	406, 1045
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	2 cut(s)	786, 1084
BsaHI	GRCGYC	1 cut(s)	856
BsaJI	CCNNGG	7 cut(s)	159, 363, 477, 591, 705, 1033, 1082
BsaWI	WCCGGW	2 cut(s)	307, 851
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	7 cut(s)	159, 363, 477, 591, 705, 1033, 1082
BseGI	GGATG	7 cut(s)	118, 144, 469, 583, 587, 781, 1060
BseMII	CTCAG	2 cut(s)	237, 873
BseNI	ACTGG	1 cut(s)	562
BsiHKAI	GWGCWC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
BsiSI	CCGG	4 cut(s)	308, 785, 852, 1084
BsmAI	GTCTC	4 cut(s)	175, 680, 903, 1032
Bsp1286I	GDGCHC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
Bsp143I	GATC	4 cut(s)	70, 82, 271, 1024
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	6 cut(s)	123, 377, 380, 608, 644, 676
BspCNI	CTCAG	2 cut(s)	238, 874
BspHI	TCATGA	5 cut(s)	325, 553, 667, 838, 1021
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	7 cut(s)	159, 363, 477, 591, 705, 1033, 1082
BssMI	GATC	4 cut(s)	70, 82, 271, 1024
BssNI	GRCGYC	1 cut(s)	856
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	3 cut(s)	335, 360, 1108
Bst6I	CTCTTC	1 cut(s)	880
BstACI	GRCGYC	1 cut(s)	856
BstDEI	CTNAG	2 cut(s)	246, 882
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	7 cut(s)	118, 144, 469, 583, 587, 781, 1060
BstKTI	GATC	4 cut(s)	73, 85, 274, 1027
BstMAI	GTCTC	4 cut(s)	175, 680, 903, 1032
BstMBI	GATC	4 cut(s)	70, 82, 271, 1024
BstMWI	GCNNNNNNNGC	5 cut(s)	385, 394, 508, 538, 652
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	3 cut(s)	775, 784, 1082
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	7 cut(s)	118, 144, 469, 583, 587, 781, 1060
BtsIMutI	CAGTG	1 cut(s)	879
CciI	TCATGA	5 cut(s)	325, 553, 667, 838, 1021
Cfr13I	GGNCC	1 cut(s)	623
CseI	GACGC	1 cut(s)	864
Csp6I	GTAC	1 cut(s)	1104
CviAII	CATG	7 cut(s)	160, 326, 440, 554, 668, 839, 1022
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	2 cut(s)	246, 882
DpnI	GATC	4 cut(s)	72, 84, 273, 1026
DpnII	GATC	4 cut(s)	70, 82, 271, 1024
DriI	GACNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	880
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	880
Eco130I	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
Eco47I	GGWCC	1 cut(s)	623
Eco57I	CTGAAG	2 cut(s)	164, 924
EcoRII	CCWGG	1 cut(s)	775
EcoT14I	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
ErhI	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
FaeI	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
FatI	CATG	7 cut(s)	159, 325, 439, 553, 667, 838, 1021
FauI	CCCGC	1 cut(s)	130
FbaI	TGATCA	3 cut(s)	70, 82, 271
Fnu4HI	GCNGC	3 cut(s)	377, 380, 644
FokI	GGATG	7 cut(s)	105, 131, 476, 574, 590, 768, 1067
Fsp4HI	GCNGC	3 cut(s)	377, 380, 644
FspBI	CTAG	2 cut(s)	866, 1101
GluI	GCNGC	3 cut(s)	377, 380, 644
HapII	CCGG	4 cut(s)	308, 785, 852, 1084
HgaI	GACGC	1 cut(s)	864
Hin1I	GRCGYC	1 cut(s)	856
Hin1II	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
HinfI	GANTC	3 cut(s)	100, 869, 1064
HpaII	CCGG	4 cut(s)	308, 785, 852, 1084
HphI	GGTGA	6 cut(s)	77, 180, 408, 818, 1022, 1059
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	8 cut(s)	233, 269, 326, 554, 668, 839, 902, 1022
HpyAV	CCTTC	6 cut(s)	15, 29, 483, 711, 899, 1045
HpyCH4III	ACNGT	3 cut(s)	335, 360, 1108
HpyCH4V	TGCA	2 cut(s)	1046, 1112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	385, 394, 508, 538, 652
HpyF3I	CTNAG	2 cut(s)	246, 882
Hsp92I	GRCGYC	1 cut(s)	856
Hsp92II	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
Ksp22I	TGATCA	3 cut(s)	70, 82, 271
Kzo9I	GATC	4 cut(s)	70, 82, 271, 1024
LmnI	GCTCC	1 cut(s)	310
LweI	GCATC	2 cut(s)	406, 1045
MaeI	CTAG	2 cut(s)	866, 1101
MaeIII	GTNAC	3 cut(s)	186, 414, 1028
MalI	GATC	4 cut(s)	72, 84, 273, 1026
MboI	GATC	4 cut(s)	70, 82, 271, 1024
MboII	GAAGA	4 cut(s)	20, 170, 867, 971
MfeI	CAATTG	1 cut(s)	449
MhlI	GDGCHC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
MluCI	AATT	2 cut(s)	449, 1088
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	5 cut(s)	33, 239, 435, 555, 1148
MroXI	GAANNNNTTC	1 cut(s)	700
MseI	TTAA	3 cut(s)	224, 948, 1091
MslI	CAYNNNNRTG	1 cut(s)	804
MspI	CCGG	4 cut(s)	308, 785, 852, 1084
MspR9I	CCNGG	3 cut(s)	777, 786, 1084
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	777
MwoI	GCNNNNNNNGC	5 cut(s)	385, 394, 508, 538, 652
NciI	CCSGG	2 cut(s)	786, 1084
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	70, 82, 271, 1024
NlaIII	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
NmuCI	GTSAC	3 cut(s)	186, 414, 1028
OliI	CACNNNNGTG	1 cut(s)	804
PagI	TCATGA	5 cut(s)	325, 553, 667, 838, 1021
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	2 cut(s)	100, 1064
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	378, 381, 645
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspPI	GGNCC	1 cut(s)	623
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	3 cut(s)	224, 948, 1091
SatI	GCNGC	3 cut(s)	377, 380, 644
Sau3AI	GATC	4 cut(s)	70, 82, 271, 1024
Sau96I	GGNCC	1 cut(s)	623
ScaI	AGTACT	1 cut(s)	1105
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	3 cut(s)	777, 786, 1084
SduI	GDGCHC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
SfaNI	GCATC	2 cut(s)	406, 1045
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	804
Sse9I	AATT	2 cut(s)	449, 1088
SsiI	CCGC	6 cut(s)	123, 377, 380, 608, 644, 676
SspMI	CTAG	2 cut(s)	866, 1101
StyD4I	CCNGG	3 cut(s)	775, 784, 1082
StyI	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
TaaI	ACNGT	3 cut(s)	335, 360, 1108
TasI	AATT	2 cut(s)	449, 1088
TatI	WGTACW	1 cut(s)	1103
TauI	GCSGC	3 cut(s)	379, 382, 646
TfiI	GAWTC	2 cut(s)	100, 1064
Tru1I	TTAA	3 cut(s)	224, 948, 1091
Tru9I	TTAA	3 cut(s)	224, 948, 1091
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	3 cut(s)	186, 414, 1028
Tsp45I	GTSAC	3 cut(s)	186, 414, 1028
TspDTI	ATGAA	6 cut(s)	456, 570, 684, 807, 855, 972
TspRI	CASTG	1 cut(s)	886
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	2 cut(s)	866, 1101
ZrmI	AGTACT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.