Rorug03G0340000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001844
Physical Location & Seq
Forward (+)
40529579 .. 40532746
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0340000.1

Sequence Viewer

Length: 942 bp
ATGGCCACTGTCCTCAGAAGTCCACCTTTGCGGGCACCAACACCAAAACCTTCGTACGTTTGGTCTCGACACTTGACCCCTCAAACCTCTCTGCCGTCTCTCCGCTCCCTCAAGCTTTTGCCGTTGGCTTCCCACCGTCAAATTGAAACCACCAAACACGTCCAGATATCCCAAGGAGAAGGACGAGCATTGGAAATCCATACCTCAACAGATTTGCACAAGCTTTTTAGGAAAACTTTGGTTACCAGAGGTATTCAAGATGTGAAGAAGCCTTATACATGGATATCTACATTCTTAATTGGACAGAGCTTATGGCTGATCTCTACACCAATGGCACAATCACGTGAAATTATAAAAACAAATGTGGTTTATGAGACTGGAGAGTTATTTGAATTGGGAATTCAGCTTTCATACTTGCTACTATTGTTGGGTTTTCTTGGGATTGGAACCTTCTTTGTGATTCGTCAAGTACTTGTACGTAGAGAACTTGATCTTTCTGCCAAAGAATTGCAAGAGCAGGTACGAAGTGGCGATGCTAGTGCAACGGAGCTTTTTGAACTTGGAGCAGTGATGCTGAGGAGAAAAATTTATCCAGCTGCTACTAAGTACTTGGTTCAGGCAATTGAGAAATGGGATGGGGATGACCAAGATCTTGCTCAGGTTTACAATGCCCTTGGGGTCAGTTATGTCCGTGATGGGAAGCTTGCTAAGGGAATTACCATGTTTGAAACTGCGGTGAAGCTTCAGCCAGGCTATGTTACTGCTTGGAACAACCTTGGTGATGCCTATGAACAGAAGAAAGACTTTAAGTCTGCCCTGAATGCATTTGAAGAAGTGCTTCTTTTTGATCCTAACAACAAAGTGGCGCAACCACGGCGAGATGCTTTGAAGGAACAAGTGAAATTGTACAGAGATGTCCCCGTTAAAACAAAGGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 Peptidase_C48

Protein Analysis

313

Amino Acids

35.53

Weight (kDa)

9.55

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 217 - 280 4.1e-08 Tetratricopeptide repeat
TPR_16 PF13432 224 - 280 1.1e-08 Tetratricopeptide repeat
TPR_19 PF14559 231 - 287 7.5e-06 Tetratricopeptide repeat
TPR_2 PF07719 254 - 286 1.6e-07 Tetratricopeptide repeat
TPR_8 PF13181 254 - 286 5e-06 Tetratricopeptide repeat
TPR_1 PF00515 255 - 286 7e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 3 cut(s) 31, 103, 734
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 399, 585
AcuI CTGAAG 1 cut(s) 728
AcvI CACGTG 1 cut(s) 344
AfaI GTAC 6 cut(s) 56, 471, 477, 522, 608, 908
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 7 cut(s) 146, 257, 392, 557, 728, 830, 889
AhdI GACNNNNNGTC 1 cut(s) 808
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 8 cut(s) 115, 223, 309, 406, 550, 596, 703, 742
AluI AGCT 8 cut(s) 115, 223, 309, 406, 550, 596, 703, 742
Alw26I GTCTC 3 cut(s) 69, 102, 368
AlwI GGATC 1 cut(s) 842
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 2 cut(s) 399, 585
Asp700I GAANNNNTTC 1 cut(s) 837
AspLEI GCGC 1 cut(s) 868
AsuHPI GGTGA 2 cut(s) 748, 791
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 34
BbrPI CACGTG 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 1 cut(s) 583
BccI CCATC 2 cut(s) 629, 689
BceAI ACGGC 3 cut(s) 79, 106, 890
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 750
BcoDI GTCTC 3 cut(s) 69, 102, 368
BfaI CTAG 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 508
BglII AGATCT 1 cut(s) 649
BisI GCNGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 598
BmcAI AGTACT 2 cut(s) 471, 608
Bme1390I CCNGG 1 cut(s) 750
BmeRI GACNNNNNGTC 1 cut(s) 808
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 36, 448
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 4 cut(s) 523, 561, 772, 871
BpmI CTGGAG 1 cut(s) 399
Bpu10I CCTNAGC 3 cut(s) 575, 657, 708
BpuEI CTTGAG 1 cut(s) 95
BsaAI YACGTR 2 cut(s) 344, 479
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 172, 673, 775, 872
Bse1I ACTGG 1 cut(s) 382
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 4 cut(s) 172, 673, 775, 872
BseGI GGATG 2 cut(s) 640, 646
BseMII CTCAG 3 cut(s) 28, 566, 671
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 592
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 583
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 34
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 902
BsmAI GTCTC 3 cut(s) 69, 102, 368
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 902
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 906
Bsp143I GATC 4 cut(s) 318, 490, 649, 847
BspACI CCGC 3 cut(s) 31, 103, 734
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 27, 567, 670
BspLI GGNNCC 2 cut(s) 36, 448
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 1 cut(s) 842
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 4 cut(s) 172, 673, 775, 872
BssMI GATC 4 cut(s) 318, 490, 649, 847
BssT1I CCWWGG 3 cut(s) 172, 673, 775
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 10, 137
BstAUI TGTACA 1 cut(s) 906
BstBAI YACGTR 2 cut(s) 344, 479
BstC8I GCNNGC 2 cut(s) 33, 705
BstDEI CTNAG 5 cut(s) 14, 575, 603, 657, 708
BstDSI CCRYGG 1 cut(s) 872
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 2 cut(s) 640, 646
BstHHI GCGC 1 cut(s) 868
BstKTI GATC 4 cut(s) 321, 493, 652, 850
BstMAI GTCTC 3 cut(s) 69, 102, 368
BstMBI GATC 4 cut(s) 318, 490, 649, 847
BstMWI GCNNNNNNNGC 2 cut(s) 821, 874
BstNI CCWGG 1 cut(s) 750
BstPI GGTNACC 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 748
BstSLI GKGCMC 1 cut(s) 37
BstSNI TACGTA 1 cut(s) 479
BstV1I GCAGC 1 cut(s) 583
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 872
BtgZI GCGATG 1 cut(s) 546
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 640, 646
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 6, 573
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 33, 705
CfoI GCGC 1 cut(s) 868
Csp6I GTAC 6 cut(s) 55, 470, 476, 521, 607, 907
CviAII CATG 2 cut(s) 279, 721
CviQI GTAC 6 cut(s) 55, 470, 476, 521, 607, 907
DdeI CTNAG 5 cut(s) 14, 575, 603, 657, 708
DpnI GATC 4 cut(s) 320, 492, 651, 849
DpnII GATC 4 cut(s) 318, 490, 649, 847
DriI GACNNNNNGTC 1 cut(s) 808
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 808
Eco105I TACGTA 1 cut(s) 479
Eco130I CCWWGG 3 cut(s) 172, 673, 775
Eco31I GGTCTC 1 cut(s) 69
Eco32I GATATC 2 cut(s) 168, 285
Eco57I CTGAAG 1 cut(s) 728
Eco72I CACGTG 1 cut(s) 344
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 2 cut(s) 168, 285
EcoT14I CCWWGG 3 cut(s) 172, 673, 775
EcoT22I ATGCAT 1 cut(s) 826
ErhI CCWWGG 3 cut(s) 172, 673, 775
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 2 cut(s) 282, 724
FalI AAGNNNNNCTT 8 cut(s) 10, 42, 788, 820, 822, 854, 825, 857
FaqI GGGAC 1 cut(s) 902
FatI CATG 2 cut(s) 278, 720
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 597
FokI GGATG 2 cut(s) 647, 653
Fsp4HI GCNGC 1 cut(s) 597
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 867
GluI GCNGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 868
Hin1II CATG 2 cut(s) 282, 724
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HindIII AAGCTT 4 cut(s) 113, 221, 701, 740
HinfI GANTC 1 cut(s) 460
HphI GGTGA 2 cut(s) 748, 791
Hpy166II GTNNAC 2 cut(s) 23, 664
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 3 cut(s) 66, 163, 257
Hpy8I GTNNAC 2 cut(s) 23, 664
HpyAV CCTTC 4 cut(s) 60, 173, 460, 883
HpyCH4III ACNGT 2 cut(s) 10, 137
HpyCH4IV ACGT 4 cut(s) 57, 159, 343, 478
HpyCH4V TGCA 4 cut(s) 217, 511, 542, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 821, 874
HpyF3I CTNAG 5 cut(s) 14, 575, 603, 657, 708
HpySE526I ACGT 4 cut(s) 57, 159, 343, 478
Hsp92II CATG 2 cut(s) 282, 724
HspAI GCGC 1 cut(s) 866
Kzo9I GATC 4 cut(s) 318, 490, 649, 847
LmnI GCTCC 3 cut(s) 110, 547, 563
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 4 cut(s) 523, 561, 772, 871
MaeI CTAG 1 cut(s) 537
MaeII ACGT 4 cut(s) 57, 159, 343, 478
MaeIII GTNAC 2 cut(s) 241, 757
MalI GATC 4 cut(s) 320, 492, 651, 849
MbiI CCGCTC 1 cut(s) 105
MboI GATC 4 cut(s) 318, 490, 649, 847
MboII GAAGA 3 cut(s) 277, 808, 842
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 23, 90, 97, 119, 214, 242, 570
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 837
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 296, 807, 924
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 750
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 2 cut(s) 821, 874
NdeII GATC 4 cut(s) 318, 490, 649, 847
NlaIII CATG 2 cut(s) 282, 724
NlaIV GGNNCC 2 cut(s) 36, 448
NsiI ATGCAT 1 cut(s) 826
PctI GAATGC 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 1 cut(s) 460
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 1 cut(s) 598
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
Ppu21I YACGTR 2 cut(s) 344, 479
PsiI TTATAA 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 748
PspCI CACGTG 1 cut(s) 344
PspEI GGTNACC 1 cut(s) 241
PspGI CCWGG 1 cut(s) 748
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 36, 448
PsuI RGATCY 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 6 cut(s) 56, 471, 477, 522, 608, 908
RsaNI GTAC 6 cut(s) 55, 470, 476, 521, 607, 907
SaqAI TTAA 3 cut(s) 296, 807, 924
SatI GCNGC 1 cut(s) 597
Sau3AI GATC 4 cut(s) 318, 490, 649, 847
ScaI AGTACT 2 cut(s) 471, 608
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 4 cut(s) 523, 561, 772, 871
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SnaBI TACGTA 1 cut(s) 479
SsiI CCGC 3 cut(s) 31, 103, 734
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 3 cut(s) 172, 673, 775
TaaI ACNGT 2 cut(s) 10, 137
TaiI ACGT 4 cut(s) 60, 162, 346, 481
TaqI TCGA 1 cut(s) 67
TatI WGTACW 3 cut(s) 469, 606, 906
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 3 cut(s) 296, 807, 924
Tru9I TTAA 3 cut(s) 296, 807, 924
TscAI CASTG 2 cut(s) 13, 573
TseI GCWGC 1 cut(s) 596
TspDTI ATGAA 2 cut(s) 399, 804
TspGWI ACGGA 2 cut(s) 560, 680
TspRI CASTG 2 cut(s) 13, 573
XapI RAATTY 2 cut(s) 399, 585
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 1 cut(s) 537
ZrmI AGTACT 2 cut(s) 471, 608
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.