Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000171

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

21707 .. 30678

Gene Structure 8972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_171G00441360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGCCGTGCTTGGCCGGTTACATGCGATTCCCTTGTTGCCCGTGTCGAGGCTTCGGGCTAGGCTCTTTTGGGCCTGCACCGGGCTGGTTTGTGGATTGGAACCATATTGATGAGGAGATGAATAGAAGGAGGCGAAAGAAGAAGAGGCAAGGCTCAAGGCCGGTACGAAGTTGGCGTATGGGCGGGGATGACGGCAACGCAGATGCAAATTGTCCAATCATGGCAGGGACGAAGTTTCGCTCCCAATGGACGATGGCGACCGCCTCGTGTCGCTACGGCGGTGGAGGCGGCTATGGCGCTTCTAGGTGCGACCGCTATGGTGGCGTCCGGCCGGATCAAAACCGGTCCGATGGGTCGAGTGGATCGACGAGGGGTATGGCGAGGCTCGCGTGGCGAACGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.97

Weight (kDa)

10.41

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	392
AciI	CCGC	5 cut(s)	186, 264, 282, 291, 316
AclWI	GGATC	2 cut(s)	345, 373
AcoI	YGGCCR	2 cut(s)	15, 332
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	50, 83
AgeI	ACCGGT	1 cut(s)	345
AlwI	GGATC	2 cut(s)	345, 373
AoxI	GGCC	4 cut(s)	15, 74, 161, 332
AsiGI	ACCGGT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	74, 348
AsuC2I	CCSGG	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	268
BccI	CCATC	2 cut(s)	250, 347
BceAI	ACGGC	2 cut(s)	211, 295
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	2 cut(s)	62, 306
BfoI	RGCGCY	1 cut(s)	303
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	2 cut(s)	74, 348
BmiI	GGNNCC	2 cut(s)	6, 104
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 83
Bse118I	RCCGGY	3 cut(s)	17, 163, 345
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	50, 83
BseRI	GAGGAG	1 cut(s)	131
BseX3I	CGGCCG	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	392
Bsh1285I	CGRYCG	3 cut(s)	264, 316, 335
BshFI	GGCC	4 cut(s)	17, 76, 163, 334
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	345
BsiEI	CGRYCG	3 cut(s)	264, 316, 335
BsiSI	CCGG	6 cut(s)	18, 83, 164, 331, 335, 346
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	50, 83
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	4 cut(s)	17, 76, 163, 334
Bsp143I	GATC	2 cut(s)	337, 365
BspACI	CCGC	5 cut(s)	186, 264, 282, 291, 316
BspANI	GGCC	4 cut(s)	17, 76, 163, 334
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	6, 104
BspPI	GGATC	2 cut(s)	345, 373
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	3 cut(s)	17, 163, 345
BssAI	RCCGGY	3 cut(s)	17, 163, 345
BssMI	GATC	2 cut(s)	337, 365
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	78, 390
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	340, 368
BstMBI	GATC	2 cut(s)	337, 365
BstMCI	CGRYCG	3 cut(s)	264, 316, 335
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 297, 324, 389, 394
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	392
BstZI	CGGCCG	1 cut(s)	332
BsuRI	GGCC	4 cut(s)	17, 76, 163, 334
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	78, 390
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	3 cut(s)	17, 163, 345
Cfr13I	GGNCC	2 cut(s)	74, 348
CpoI	CGGWCCG	1 cut(s)	348
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	167
CspAI	ACCGGT	1 cut(s)	345
CspI	CGGWCCG	1 cut(s)	348
CviAII	CATG	2 cut(s)	25, 223
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	2 cut(s)	339, 367
DpnII	GATC	2 cut(s)	337, 365
EaeI	YGGCCR	2 cut(s)	15, 332
EagI	CGGCCG	1 cut(s)	332
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	348
Eco52I	CGGCCG	1 cut(s)	332
FaeI	CATG	2 cut(s)	28, 226
FaiI	YATR	7 cut(s)	26, 108, 182, 224, 297, 321, 380
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	24, 222
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	2 cut(s)	62, 306
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	4 cut(s)	17, 76, 163, 334
HapII	CCGG	6 cut(s)	18, 83, 164, 331, 335, 346
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	28, 226
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	6 cut(s)	18, 83, 164, 331, 335, 346
Hpy188I	TCNGA	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	80, 209
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 297, 324, 389, 394
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	28, 226
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	337, 365
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	9 cut(s)	31, 73, 90, 96, 177, 213, 344, 348, 359
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	62, 306
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	2 cut(s)	339, 367
MboI	GATC	2 cut(s)	337, 365
MboII	GAAGA	2 cut(s)	154, 157
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	9 cut(s)	44, 109, 126, 141, 277, 281, 366, 378, 396
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	6 cut(s)	18, 83, 164, 331, 335, 346
MspR9I	CCNGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	288, 297, 324, 389, 394
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	337, 365
NlaIII	CATG	2 cut(s)	28, 226
NlaIV	GGNNCC	2 cut(s)	6, 104
NspI	RCATGY	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	2 cut(s)	175, 365
PfeI	GAWTC	1 cut(s)	30
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	6, 104
PspPI	GGNCC	2 cut(s)	74, 348
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	111
Rsr2I	CGGWCCG	1 cut(s)	348
RsrII	CGGWCCG	1 cut(s)	348
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	2 cut(s)	337, 365
Sau96I	GGNCC	2 cut(s)	74, 348
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	2 cut(s)	311, 407
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	5 cut(s)	186, 264, 282, 291, 316
SspMI	CTAG	2 cut(s)	62, 306
StyD4I	CCNGG	1 cut(s)	82
TaqI	TCGA	3 cut(s)	49, 359, 368
TasI	AATT	1 cut(s)	211
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	348
XceI	RCATGY	1 cut(s)	28
XspI	CTAG	2 cut(s)	62, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.