Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

7067922 .. 7069740

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG039500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGCCTGCTTCCAAATATTTGCTTCTGTTTCTTCTTGGAGTGTTGGTTTTCACAACCACTCCCTCTCTTGCTGATCACCGCGATGATCACCACAAACCACCCTTTCATAAGCCTCCTACTCATCCATCCGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACAAACCAAACACATGCCTCCAACCACATTAAGCAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAAAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGCTTGTTGGAGATCGATGGAAAACCTTCTAAGGGAGAGAAATCGCCACGAGAGCACAATGAGCCTCATAAGGGAGAAAAGCCACCGCCGGAGCACAAAGGAAAGCCAGGCGAGCAACCTCACAAGCATCATGAGCACAAACCTCCCCATGAACAAAACGTTGGACGTCGTTTGTTAGAGTCATCCTCCTCAGAATTGGATGGTAAGCCACCAAAGGGTAAAAATTCTCCACCGAAACGCAAGCCACCTCATGAACACCAATTGTTAGAGTTGGATGGAAAACCCAACGGAGAGAAGCCACCCCGAGAGCATGACGGACCTCACAAGGGAGAGAAGCCACCACAAAAGCACAATGGACCTCACAAGGGAGAGAAGCCACCACCAAAGCATAAGCCACCACATGAACACCAGTTGTTGGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCGCAAGACCACAATGAGGCTCATAAGGGAGAGAAACCACCACCAAAACACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATGGTAAACCTTCCAAGGGAGAGAACCCACCGCAAGACCACAATGAGGCTCATAAGGGAGAGAAACCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATGGCAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAACATAAGGGAGAGAAGCCACTACAAAAGCACAAGCCACCTCATGAACACCGTTTTTTAGAGACCGATGGAAAACCTTCCAAGGGAGAAAAGCCTCCACAACATCACAATGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCAGGACATCCAGATAATGAACCTCACAAGGGTGAGAAGCCACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCTTCTTCCACTGAATTAGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGGCAAAAATGATGATCACAAGCCATATCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGAAGCCACCACATCACGACCGTCACCTTGGAGAGAATGCAGAGAAGGATGCCAGAGACCCACCACACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCAAAGAAGCCTCCAACTTCCCCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

521

Amino Acids

58.76

Weight (kDa)

9.52

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	751
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	1384
AciI	CCGC	6 cut(s)	79, 337, 422, 791, 905, 1343
AclI	AACGTT	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	502, 1264
AfaI	GTAC	1 cut(s)	1513
AjnI	CCWGG	2 cut(s)	442, 1183
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AleI	CACNNNNGTG	1 cut(s)	1212
Alw21I	GWGCWC	8 cut(s)	255, 318, 336, 393, 432, 474, 1029, 1179
Alw26I	GTCTC	4 cut(s)	178, 1088, 1311, 1464
Ama87I	CYCGRG	2 cut(s)	248, 639
Aor13HI	TCCGGA	1 cut(s)	1384
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	3 cut(s)	361, 769, 1108
AspS9I	GGNCC	2 cut(s)	653, 692
AsuHPI	GGTGA	6 cut(s)	68, 80, 170, 183, 1226, 1430
AvaI	CYCGRG	2 cut(s)	248, 639
AvaII	GGWCC	2 cut(s)	653, 692
BauI	CACGAG	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	1272
Bbv12I	GWGCWC	8 cut(s)	255, 318, 336, 393, 432, 474, 1029, 1179
BceAI	ACGGC	1 cut(s)	1251
BciT130I	CCWGG	2 cut(s)	444, 1185
BclI	TGATCA	4 cut(s)	73, 85, 274, 1369
BcoDI	GTCTC	4 cut(s)	178, 1088, 1311, 1464
BfaI	CTAG	1 cut(s)	1274
BisI	GCNGC	1 cut(s)	1343
BlsI	GCNGC	1 cut(s)	1344
BmcAI	AGTACT	1 cut(s)	1513
Bme1390I	CCNGG	2 cut(s)	444, 1185
Bme18I	GGWCC	2 cut(s)	653, 692
BmeT110I	CYCGRG	2 cut(s)	248, 639
BmgT120I	GGNCC	2 cut(s)	653, 692
BmrFI	CCNGG	2 cut(s)	444, 1185
BmsI	GCATC	2 cut(s)	472, 1453
BpiI	GAAGAC	1 cut(s)	1272
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	272
BsaHI	GRCGYC	2 cut(s)	502, 1264
BsaI	GGTCTC	2 cut(s)	1088, 1464
BsaJI	CCNNGG	7 cut(s)	162, 774, 888, 1002, 1113, 1441, 1490
BsaWI	WCCGGW	3 cut(s)	310, 1259, 1384
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 43, 60, 73
Bse1I	ACTGG	1 cut(s)	745
BseAI	TCCGGA	1 cut(s)	1384
BseBI	CCWGG	2 cut(s)	444, 1185
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	7 cut(s)	162, 774, 888, 1002, 1113, 1441, 1490
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	1435
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	1435
BsiHKAI	GWGCWC	8 cut(s)	255, 318, 336, 393, 432, 474, 1029, 1179
BsiHKCI	CYCGRG	2 cut(s)	248, 639
BsiSI	CCGG	4 cut(s)	311, 425, 1260, 1385
BsmAI	GTCTC	4 cut(s)	178, 1088, 1311, 1464
BsmI	GAATGC	1 cut(s)	1456
Bso31I	GGTCTC	2 cut(s)	1088, 1464
BsoBI	CYCGRG	2 cut(s)	248, 639
Bsp1286I	GDGCHC	8 cut(s)	255, 318, 336, 393, 432, 474, 1029, 1179
Bsp13I	TCCGGA	1 cut(s)	1384
Bsp143I	GATC	5 cut(s)	73, 85, 274, 348, 1369
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	6 cut(s)	79, 337, 422, 791, 905, 1343
BspCNI	CTCAG	1 cut(s)	539
BspDI	ATCGAT	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	1384
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	5 cut(s)	328, 466, 586, 1075, 1246
BspTNI	GGTCTC	2 cut(s)	1088, 1464
BsrI	ACTGG	1 cut(s)	745
BssECI	CCNNGG	7 cut(s)	162, 774, 888, 1002, 1113, 1441, 1490
BssMI	GATC	5 cut(s)	73, 85, 274, 348, 1369
BssNI	GRCGYC	2 cut(s)	502, 1264
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	6 cut(s)	162, 774, 888, 1002, 1113, 1441
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	444, 1185
Bst4CI	ACNGT	3 cut(s)	1085, 1436, 1516
BstACI	GRCGYC	2 cut(s)	502, 1264
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	4 cut(s)	6, 233, 449, 578
BstDEI	CTNAG	2 cut(s)	366, 526
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	5 cut(s)	76, 88, 277, 351, 1372
BstMAI	GTCTC	4 cut(s)	178, 1088, 1311, 1464
BstMBI	GATC	5 cut(s)	73, 85, 274, 348, 1369
BstMCI	CGRYCG	1 cut(s)	1435
BstMWI	GCNNNNNNNGC	4 cut(s)	388, 397, 448, 469
BstNI	CCWGG	2 cut(s)	444, 1185
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	442, 1183
BstUI	CGCG	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	1272
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	1287
Cac8I	GCNNGC	4 cut(s)	6, 233, 449, 578
CciI	TCATGA	5 cut(s)	328, 466, 586, 1075, 1246
Cfr13I	GGNCC	2 cut(s)	653, 692
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	1272
Csp6I	GTAC	1 cut(s)	1512
CviQI	GTAC	1 cut(s)	1512
DdeI	CTNAG	2 cut(s)	366, 526
DpnI	GATC	5 cut(s)	75, 87, 276, 350, 1371
DpnII	GATC	5 cut(s)	73, 85, 274, 348, 1369
Eco130I	CCWWGG	6 cut(s)	162, 774, 888, 1002, 1113, 1441
Eco31I	GGTCTC	2 cut(s)	1088, 1464
Eco47I	GGWCC	2 cut(s)	653, 692
Eco57I	CTGAAG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	248, 639
EcoRII	CCWGG	2 cut(s)	442, 1183
EcoT14I	CCWWGG	6 cut(s)	162, 774, 888, 1002, 1113, 1441
ErhI	CCWWGG	6 cut(s)	162, 774, 888, 1002, 1113, 1441
FbaI	TGATCA	4 cut(s)	73, 85, 274, 1369
Fnu4HI	GCNGC	1 cut(s)	1343
Fsp4HI	GCNGC	1 cut(s)	1343
FspBI	CTAG	1 cut(s)	1274
GluI	GCNGC	1 cut(s)	1343
HapII	CCGG	4 cut(s)	311, 425, 1260, 1385
HgaI	GACGC	1 cut(s)	1272
Hin1I	GRCGYC	2 cut(s)	502, 1264
HinfI	GANTC	2 cut(s)	515, 1277
HpaII	CCGG	4 cut(s)	311, 425, 1260, 1385
HphI	GGTGA	6 cut(s)	68, 80, 170, 183, 1226, 1430
Hpy166II	GTNNAC	1 cut(s)	881
Hpy188I	TCNGA	4 cut(s)	130, 186, 529, 1494
Hpy188III	TCNNGA	8 cut(s)	329, 467, 587, 1076, 1193, 1247, 1385, 1430
Hpy8I	GTNNAC	1 cut(s)	881
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	7 cut(s)	191, 372, 780, 894, 1008, 1119, 1453
HpyCH4III	ACNGT	3 cut(s)	1085, 1436, 1516
HpyCH4IV	ACGT	3 cut(s)	271, 495, 502
HpyCH4V	TGCA	2 cut(s)	1454, 1520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	388, 397, 448, 469
HpyF3I	CTNAG	2 cut(s)	366, 526
HpySE526I	ACGT	3 cut(s)	271, 495, 502
Hsp92I	GRCGYC	2 cut(s)	502, 1264
Kpn2I	TCCGGA	1 cut(s)	1384
Ksp22I	TGATCA	4 cut(s)	73, 85, 274, 1369
Kzo9I	GATC	5 cut(s)	73, 85, 274, 348, 1369
LmnI	GCTCC	2 cut(s)	313, 427
LweI	GCATC	2 cut(s)	472, 1453
MaeI	CTAG	1 cut(s)	1274
MaeII	ACGT	3 cut(s)	271, 495, 502
MaeIII	GTNAC	2 cut(s)	189, 1436
MalI	GATC	5 cut(s)	75, 87, 276, 350, 1371
MboI	GATC	5 cut(s)	73, 85, 274, 348, 1369
MboII	GAAGA	3 cut(s)	23, 1272, 1275
MfeI	CAATTG	3 cut(s)	596, 860, 974
MhlI	GDGCHC	8 cut(s)	255, 318, 336, 393, 432, 474, 1029, 1179
MluCI	AATT	7 cut(s)	530, 559, 596, 860, 974, 1292, 1496
MlyI	GAGTC	2 cut(s)	524, 1286
MroI	TCCGGA	1 cut(s)	1384
MroXI	GAANNNNTTC	3 cut(s)	361, 769, 1108
MseI	TTAA	2 cut(s)	227, 1499
MslI	CAYNNNNRTG	3 cut(s)	81, 1140, 1212
MspI	CCGG	4 cut(s)	311, 425, 1260, 1385
MspR9I	CCNGG	2 cut(s)	444, 1185
MunI	CAATTG	3 cut(s)	596, 860, 974
Mva1269I	GAATGC	1 cut(s)	1456
MvaI	CCWGG	2 cut(s)	444, 1185
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	388, 397, 448, 469
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	73, 85, 274, 348, 1369
NmuCI	GTSAC	2 cut(s)	189, 1436
NspI	RCATGY	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	1212
PagI	TCATGA	5 cut(s)	328, 466, 586, 1075, 1246
PctI	GAATGC	1 cut(s)	1456
PdmI	GAANNNNTTC	3 cut(s)	361, 769, 1108
PflMI	CCANNNNNTGG	1 cut(s)	751
PkrI	GCNGC	1 cut(s)	1344
PleI	GAGTC	2 cut(s)	523, 1285
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	523, 1285
Ppu21I	YACGTR	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	442, 1183
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	442, 1183
PspPI	GGNCC	2 cut(s)	653, 692
RsaI	GTAC	1 cut(s)	1513
RsaNI	GTAC	1 cut(s)	1512
RseI	CAYNNNNRTG	3 cut(s)	81, 1140, 1212
SaqAI	TTAA	2 cut(s)	227, 1499
SatI	GCNGC	1 cut(s)	1343
Sau3AI	GATC	5 cut(s)	73, 85, 274, 348, 1369
Sau96I	GGNCC	2 cut(s)	653, 692
ScaI	AGTACT	1 cut(s)	1513
SchI	GAGTC	2 cut(s)	524, 1286
ScrFI	CCNGG	2 cut(s)	444, 1185
SduI	GDGCHC	8 cut(s)	255, 318, 336, 393, 432, 474, 1029, 1179
SfaNI	GCATC	2 cut(s)	472, 1453
SinI	GGWCC	2 cut(s)	653, 692
SmiMI	CAYNNNNRTG	3 cut(s)	81, 1140, 1212
Sse9I	AATT	7 cut(s)	530, 559, 596, 860, 974, 1292, 1496
SsiI	CCGC	6 cut(s)	79, 337, 422, 791, 905, 1343
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	1274
StyD4I	CCNGG	2 cut(s)	442, 1183
StyI	CCWWGG	6 cut(s)	162, 774, 888, 1002, 1113, 1441
TaaI	ACNGT	3 cut(s)	1085, 1436, 1516
TaiI	ACGT	3 cut(s)	274, 498, 505
TaqI	TCGA	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	1112
TasI	AATT	7 cut(s)	530, 559, 596, 860, 974, 1292, 1496
TatI	WGTACW	1 cut(s)	1511
TauI	GCSGC	1 cut(s)	1345
Tru1I	TTAA	2 cut(s)	227, 1499
Tru9I	TTAA	2 cut(s)	227, 1499
TscAI	CASTG	1 cut(s)	1294
TseFI	GTSAC	2 cut(s)	189, 1436
Tsp45I	GTSAC	2 cut(s)	189, 1436
TspGWI	ACGGA	2 cut(s)	639, 666
TspRI	CASTG	1 cut(s)	1294
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	2 cut(s)	653, 692
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	3 cut(s)	361, 769, 1108
XspI	CTAG	1 cut(s)	1274
ZraI	GACGTC	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.