Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

9096562 .. 9100877

Gene Structure 4316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGGAAGTCCCTCCCCTTCAGAAGTCACCACAACCACCCAAACACATGCCTCCAACCACATTAACTAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTGAGGGAGAGAAGCCACCACCGGAGCACAAGCCTGGAAAACCTTCCAAGGGAGAAAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCGAAAGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCACTTGTTGGAGATCAATGGAAAACCTTCCAAGGGAGACAAGCCTCCTCAACATCAGAGTAAGCCTCCTAACGGAGGAAATCCAAAAACAAACATGCCAGAGAAGCCACCATCAACAGTTCATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.54

Weight (kDa)

9.27

Isoelectric Point (pI)

65.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AclWI	GGATC	2 cut(s)	218, 231
AcuI	CTGAAG	1 cut(s)	5
AcvI	CACGTG	1 cut(s)	110
AfiI	CCNNNNNNNGG	8 cut(s)	125, 176, 215, 218, 280, 305, 344, 347
AjnI	CCWGG	1 cut(s)	160
Alw21I	GWGCWC	4 cut(s)	93, 156, 255, 273
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	218, 231
Ama87I	CYCGRG	1 cut(s)	86
Asp700I	GAANNNNTTC	2 cut(s)	169, 298
AsuHPI	GGTGA	2 cut(s)	21, 140
AvaI	CYCGRG	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	223
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	4 cut(s)	93, 156, 255, 273
BccI	CCATC	2 cut(s)	106, 391
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	162
BplI	GAGNNNNNCTC	4 cut(s)	193, 225, 322, 354
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	174, 303
BsaWI	WCCGGW	2 cut(s)	148, 247
Bsc4I	CCNNNNNNNGG	8 cut(s)	125, 176, 215, 218, 280, 305, 344, 347
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	174, 303
BseLI	CCNNNNNNNGG	8 cut(s)	125, 176, 215, 218, 280, 305, 344, 347
BseRI	GAGGAG	2 cut(s)	180, 309
BsiHKAI	GWGCWC	4 cut(s)	93, 156, 255, 273
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	149, 248
BslI	CCNNNNNNNGG	8 cut(s)	125, 176, 215, 218, 280, 305, 344, 347
BsmAI	GTCTC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	4 cut(s)	93, 156, 255, 273
Bsp143I	GATC	3 cut(s)	112, 223, 285
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	218, 231
BssECI	CCNNGG	2 cut(s)	174, 303
BssMI	GATC	3 cut(s)	112, 223, 285
BssT1I	CCWWGG	2 cut(s)	174, 303
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	391
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	69
BstENI	CCTNNNNNAGG	2 cut(s)	216, 345
BstKTI	GATC	3 cut(s)	115, 226, 288
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	3 cut(s)	112, 223, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	2 cut(s)	52, 370
BstSCI	CCNGG	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
CciI	TCATGA	1 cut(s)	265
CviAII	CATG	3 cut(s)	49, 266, 367
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	3 cut(s)	114, 225, 287
DpnII	GATC	3 cut(s)	112, 223, 285
Eco130I	CCWWGG	2 cut(s)	174, 303
Eco57I	CTGAAG	1 cut(s)	5
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	2 cut(s)	216, 345
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	174, 303
ErhI	CCWWGG	2 cut(s)	174, 303
FaeI	CATG	3 cut(s)	52, 269, 370
FaiI	YATR	3 cut(s)	50, 267, 368
FatI	CATG	3 cut(s)	48, 265, 366
FbaI	TGATCA	1 cut(s)	112
HapII	CCGG	2 cut(s)	149, 248
Hin1II	CATG	3 cut(s)	52, 269, 370
HpaII	CCGG	2 cut(s)	149, 248
HphI	GGTGA	2 cut(s)	21, 140
Hpy188I	TCNGA	4 cut(s)	24, 201, 228, 330
Hpy188III	TCNNGA	1 cut(s)	266
HpyAV	CCTTC	3 cut(s)	29, 180, 309
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	52, 269, 370
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	112, 223, 285
LmnI	GCTCC	2 cut(s)	151, 250
LpnPI	CCDG	5 cut(s)	147, 162, 174, 261, 384
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	3 cut(s)	114, 225, 287
MboI	GATC	3 cut(s)	112, 223, 285
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	4 cut(s)	93, 156, 255, 273
MmeI	TCCRAC	2 cut(s)	80, 261
MroXI	GAANNNNTTC	2 cut(s)	169, 298
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	2 cut(s)	149, 248
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	3 cut(s)	112, 223, 285
NlaIII	CATG	3 cut(s)	52, 269, 370
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	27
NspI	RCATGY	2 cut(s)	52, 370
PagI	TCATGA	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	169, 298
PflMI	CCANNNNNTGG	1 cut(s)	280
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	3 cut(s)	112, 223, 285
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	4 cut(s)	93, 156, 255, 273
SetI	ASST	5 cut(s)	112, 121, 172, 265, 301
SmiMI	CAYNNNNRTG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	2 cut(s)	174, 303
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	383
TspGWI	ACGGA	2 cut(s)	231, 360
Van91I	CCANNNNNTGG	1 cut(s)	280
XagI	CCTNNNNNAGG	2 cut(s)	216, 345
XceI	RCATGY	2 cut(s)	52, 370
XmnI	GAANNNNTTC	2 cut(s)	169, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.