Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

9267017 .. 9268736

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGCCTGCTTCCAAATATTTGCTTCTGTTTCTTCTTGGAGTGTTGGTTTTCACTACCACTCCCTCTCTTGCTGATCACCGCGATGATCACCACAAACCACCCTTTCATAAGCCTCCTACTCATCCATCCGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCATCTTCAGAAGTCACCACAACAAACCAAACACATGCCTCCAACCACATTAAGTAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAAAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGCTTGTTGGAGATCGATGGAAAACCTTCTAAGGAAGAGAAATCTCCACGAGAGCACAATGAGCCTCATAAGGGAGAAAAGCCACCGCCGGAGCACAAAGGAAAGCCAGGCGAGCAACCTCACAAGCATCATGAGCACAAACCTCCCCATGAACAAAACGTTGGACGTCGTTTGTTAGAGTCATCCTCCTCAGAGTTGGATGGTAAGCCACCAAAGGGTAAAAATTCTCCACCGAAACGCAAGCCACCTCATGAACACCAATTGTTAGAGTTGGATGGAAAACCTTCCAACGGAGAGAAGCCACCCCGAGAGCATGACGGACCTCACAAGGGAGAGAAGCCACCACAAAAGCACAATGGACCTCACAAGGGAGAGAAGCCACCACCAAAGCATAAGCCACCACATGAACACCAGTTGTTGGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCGCAAGACCACAATGAGGCTCATAAGGGAGAGAAACCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTTGAGTTGGATAGCAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAACATAAGGGAGCGAAGCCACCACAAAAGCACAAGCCACCTCATGAACACCGTTTGTTAGAGACCGATGGAAAACCTTCCAAGGGAGAAAAGCCTCCACAACATCACAATGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGTACAAACCAGGACATCCAGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCTTCTACCACTGAGTTAGATGGTAAGTTTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGACAAAAATGATAATCACAAGCCATATCCAGAACACAAGCCACCAAAGGGCAAGGGAGAGAAGCCACCACATCACGACCGTCACCTTGGAGAGAATGCAGAGAAGGACGACGGCAGAGACCCACCACACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCAAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

489

Amino Acids

55.2

Weight (kDa)

9.6

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	79, 337, 422, 794, 1232
AclI	AACGTT	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	502, 1153
AfaI	GTAC	2 cut(s)	1067, 1405
AjnI	CCWGG	3 cut(s)	442, 1072, 1081
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AleI	CACNNNNGTG	1 cut(s)	1101
Alw21I	GWGCWC	7 cut(s)	255, 318, 336, 393, 432, 474, 918
Alw26I	GTCTC	3 cut(s)	178, 977, 1356
Ama87I	CYCGRG	2 cut(s)	248, 642
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	4 cut(s)	361, 619, 772, 997
AspS9I	GGNCC	2 cut(s)	656, 695
AsuHPI	GGTGA	5 cut(s)	68, 80, 183, 1115, 1319
AvaI	CYCGRG	2 cut(s)	248, 642
AvaII	GGWCC	2 cut(s)	656, 695
BauI	CACGAG	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	1161
Bbv12I	GWGCWC	7 cut(s)	255, 318, 336, 393, 432, 474, 918
BceAI	ACGGC	2 cut(s)	1140, 1372
BciT130I	CCWGG	3 cut(s)	444, 1074, 1083
BclI	TGATCA	3 cut(s)	73, 85, 274
BcoDI	GTCTC	3 cut(s)	178, 977, 1356
BfaI	CTAG	1 cut(s)	1163
BisI	GCNGC	1 cut(s)	1232
BlsI	GCNGC	1 cut(s)	1233
BmcAI	AGTACT	1 cut(s)	1405
Bme1390I	CCNGG	3 cut(s)	444, 1074, 1083
Bme18I	GGWCC	2 cut(s)	656, 695
BmeT110I	CYCGRG	2 cut(s)	248, 642
BmgT120I	GGNCC	2 cut(s)	656, 695
BmrFI	CCNGG	3 cut(s)	444, 1074, 1083
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	1161
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	272
BsaHI	GRCGYC	2 cut(s)	502, 1153
BsaI	GGTCTC	2 cut(s)	977, 1356
BsaJI	CCNNGG	6 cut(s)	162, 777, 891, 1002, 1330, 1382
BsaWI	WCCGGW	2 cut(s)	310, 1148
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 43, 60, 73
Bse1I	ACTGG	1 cut(s)	748
BseBI	CCWGG	3 cut(s)	444, 1074, 1083
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	6 cut(s)	162, 777, 891, 1002, 1330, 1382
BseGI	GGATG	8 cut(s)	121, 125, 147, 518, 541, 616, 769, 1078
BseMII	CTCAG	2 cut(s)	540, 1170
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	1324
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	1324
BsiHKAI	GWGCWC	7 cut(s)	255, 318, 336, 393, 432, 474, 918
BsiHKCI	CYCGRG	2 cut(s)	248, 642
BsiSI	CCGG	3 cut(s)	311, 425, 1149
BsmAI	GTCTC	3 cut(s)	178, 977, 1356
BsmI	GAATGC	1 cut(s)	1345
Bso31I	GGTCTC	2 cut(s)	977, 1356
BsoBI	CYCGRG	2 cut(s)	248, 642
Bsp1286I	GDGCHC	7 cut(s)	255, 318, 336, 393, 432, 474, 918
Bsp143I	GATC	4 cut(s)	73, 85, 274, 348
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	79, 337, 422, 794, 1232
BspCNI	CTCAG	2 cut(s)	539, 1171
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	5 cut(s)	328, 466, 586, 964, 1135
BspTNI	GGTCTC	2 cut(s)	977, 1356
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	6 cut(s)	162, 777, 891, 1002, 1330, 1382
BssMI	GATC	4 cut(s)	73, 85, 274, 348
BssNI	GRCGYC	2 cut(s)	502, 1153
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	5 cut(s)	162, 777, 891, 1002, 1330
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	3 cut(s)	444, 1074, 1083
Bst4CI	ACNGT	3 cut(s)	974, 1325, 1408
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	2 cut(s)	502, 1153
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	6, 449, 578
BstDEI	CTNAG	3 cut(s)	366, 526, 1179
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	8 cut(s)	121, 125, 147, 518, 541, 616, 769, 1078
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	4 cut(s)	76, 88, 277, 351
BstMAI	GTCTC	3 cut(s)	178, 977, 1356
BstMBI	GATC	4 cut(s)	73, 85, 274, 348
BstMCI	CGRYCG	1 cut(s)	1324
BstMWI	GCNNNNNNNGC	3 cut(s)	397, 448, 469
BstNI	CCWGG	3 cut(s)	444, 1074, 1083
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	3 cut(s)	442, 1072, 1081
BstUI	CGCG	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	1161
Bsu15I	ATCGAT	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	8 cut(s)	121, 125, 147, 518, 541, 616, 769, 1078
BtsIMutI	CAGTG	1 cut(s)	1176
Cac8I	GCNNGC	3 cut(s)	6, 449, 578
CciI	TCATGA	5 cut(s)	328, 466, 586, 964, 1135
Cfr13I	GGNCC	2 cut(s)	656, 695
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	1161
Csp6I	GTAC	2 cut(s)	1066, 1404
CviQI	GTAC	2 cut(s)	1066, 1404
DdeI	CTNAG	3 cut(s)	366, 526, 1179
DpnI	GATC	4 cut(s)	75, 87, 276, 350
DpnII	GATC	4 cut(s)	73, 85, 274, 348
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	5 cut(s)	162, 777, 891, 1002, 1330
Eco31I	GGTCTC	2 cut(s)	977, 1356
Eco47I	GGWCC	2 cut(s)	656, 695
Eco57I	CTGAAG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	248, 642
EcoRII	CCWGG	3 cut(s)	442, 1072, 1081
EcoT14I	CCWWGG	5 cut(s)	162, 777, 891, 1002, 1330
ErhI	CCWWGG	5 cut(s)	162, 777, 891, 1002, 1330
FbaI	TGATCA	3 cut(s)	73, 85, 274
Fnu4HI	GCNGC	1 cut(s)	1232
FokI	GGATG	8 cut(s)	108, 112, 134, 505, 548, 623, 776, 1065
Fsp4HI	GCNGC	1 cut(s)	1232
FspBI	CTAG	1 cut(s)	1163
GluI	GCNGC	1 cut(s)	1232
HapII	CCGG	3 cut(s)	311, 425, 1149
HgaI	GACGC	1 cut(s)	1161
Hin1I	GRCGYC	2 cut(s)	502, 1153
HinfI	GANTC	2 cut(s)	515, 1166
HpaII	CCGG	3 cut(s)	311, 425, 1149
HphI	GGTGA	5 cut(s)	68, 80, 183, 1115, 1319
Hpy188I	TCNGA	4 cut(s)	130, 186, 529, 1386
Hpy188III	TCNNGA	7 cut(s)	329, 467, 587, 965, 1136, 1274, 1319
Hpy99I	CGWCG	2 cut(s)	507, 1358
HpyAV	CCTTC	6 cut(s)	372, 630, 783, 897, 1008, 1342
HpyCH4III	ACNGT	3 cut(s)	974, 1325, 1408
HpyCH4IV	ACGT	3 cut(s)	271, 495, 502
HpyCH4V	TGCA	2 cut(s)	1343, 1412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	397, 448, 469
HpyF3I	CTNAG	3 cut(s)	366, 526, 1179
HpySE526I	ACGT	3 cut(s)	271, 495, 502
Hsp92I	GRCGYC	2 cut(s)	502, 1153
Ksp22I	TGATCA	3 cut(s)	73, 85, 274
Kzo9I	GATC	4 cut(s)	73, 85, 274, 348
LmnI	GCTCC	3 cut(s)	313, 427, 932
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	1163
MaeII	ACGT	3 cut(s)	271, 495, 502
MaeIII	GTNAC	2 cut(s)	189, 1325
MalI	GATC	4 cut(s)	75, 87, 276, 350
MboI	GATC	4 cut(s)	73, 85, 274, 348
MboII	GAAGA	4 cut(s)	23, 173, 383, 1161
MfeI	CAATTG	2 cut(s)	596, 863
MhlI	GDGCHC	7 cut(s)	255, 318, 336, 393, 432, 474, 918
MluCI	AATT	4 cut(s)	559, 596, 863, 1388
MlyI	GAGTC	2 cut(s)	524, 1175
MroXI	GAANNNNTTC	4 cut(s)	361, 619, 772, 997
MseI	TTAA	2 cut(s)	227, 1391
MslI	CAYNNNNRTG	3 cut(s)	81, 1029, 1101
MspI	CCGG	3 cut(s)	311, 425, 1149
MspR9I	CCNGG	3 cut(s)	444, 1074, 1083
MunI	CAATTG	2 cut(s)	596, 863
Mva1269I	GAATGC	1 cut(s)	1345
MvaI	CCWGG	3 cut(s)	444, 1074, 1083
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	397, 448, 469
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	73, 85, 274, 348
NmuCI	GTSAC	2 cut(s)	189, 1325
NspI	RCATGY	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	1101
PagI	TCATGA	5 cut(s)	328, 466, 586, 964, 1135
PctI	GAATGC	1 cut(s)	1345
PdmI	GAANNNNTTC	4 cut(s)	361, 619, 772, 997
PflMI	CCANNNNNTGG	1 cut(s)	754
PkrI	GCNGC	1 cut(s)	1233
PleI	GAGTC	2 cut(s)	523, 1174
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	523, 1174
Ppu21I	YACGTR	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	442, 1072, 1081
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	3 cut(s)	442, 1072, 1081
PspPI	GGNCC	2 cut(s)	656, 695
RsaI	GTAC	2 cut(s)	1067, 1405
RsaNI	GTAC	2 cut(s)	1066, 1404
RseI	CAYNNNNRTG	3 cut(s)	81, 1029, 1101
SaqAI	TTAA	2 cut(s)	227, 1391
SatI	GCNGC	1 cut(s)	1232
Sau3AI	GATC	4 cut(s)	73, 85, 274, 348
Sau96I	GGNCC	2 cut(s)	656, 695
ScaI	AGTACT	1 cut(s)	1405
SchI	GAGTC	2 cut(s)	524, 1175
ScrFI	CCNGG	3 cut(s)	444, 1074, 1083
SduI	GDGCHC	7 cut(s)	255, 318, 336, 393, 432, 474, 918
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	2 cut(s)	656, 695
SmiMI	CAYNNNNRTG	3 cut(s)	81, 1029, 1101
Sse9I	AATT	4 cut(s)	559, 596, 863, 1388
SsiI	CCGC	5 cut(s)	79, 337, 422, 794, 1232
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	1163
StyD4I	CCNGG	3 cut(s)	442, 1072, 1081
StyI	CCWWGG	5 cut(s)	162, 777, 891, 1002, 1330
TaaI	ACNGT	3 cut(s)	974, 1325, 1408
TaiI	ACGT	3 cut(s)	274, 498, 505
TaqI	TCGA	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	1001
TasI	AATT	4 cut(s)	559, 596, 863, 1388
TatI	WGTACW	2 cut(s)	1065, 1403
TauI	GCSGC	1 cut(s)	1234
Tru1I	TTAA	2 cut(s)	227, 1391
Tru9I	TTAA	2 cut(s)	227, 1391
TscAI	CASTG	1 cut(s)	1183
TseFI	GTSAC	2 cut(s)	189, 1325
Tsp45I	GTSAC	2 cut(s)	189, 1325
TspDTI	ATGAA	9 cut(s)	95, 501, 603, 756, 870, 936, 981, 1104, 1152
TspGWI	ACGGA	2 cut(s)	642, 669
TspRI	CASTG	1 cut(s)	1183
Van91I	CCANNNNNTGG	1 cut(s)	754
VpaK11BI	GGWCC	2 cut(s)	656, 695
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	4 cut(s)	361, 619, 772, 997
XspI	CTAG	1 cut(s)	1163
ZraI	GACGTC	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.