Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Forward (+)

57864333 .. 57865445

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCCTTCCAGTTGCTTGCTTCTGTTTCTTCTTGGAGTGACGGTTTTCACCATCACTCCTTCTCTTGCTGATCACCGCGATGATCACCACAAGCCACAGATTCAAAAGCCTCCTACCGATCCCTCAGACAACCACAAACCGCCCATCCACAAACCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACCCCCCAAACACAAGCCTACAACAACATTAACTAAGCAAGAGCCACTCCTGGAGCACAAGCCATCAACCCCACTTGATCAACCTCCAAAGGGTAAGGGAGAGAAGTCACCACCGGATCACAAGTCACCTCATGATCACCGCTTATTGGAGACCGATGGAAAATCTTCTAAGGGAGACAAGTCACCACGAGAGCACAATGAGCCTCGTAAGGGAGAAAAGCCACCACCGGAACACAAAGGAAACCCAGGCGAGCAACCTCACAAGGGTCACGAGCACAAGCCTCCCCATGAACAAAACGTGGGACGTCGTTTGTTAGAGTCTTCTTCCTCAGAGTTGGATGGTAAGCCACCTAAGGGAGAGAAACCACCACAAGAACGCAGTGAGCCTCACAAGGAAGTCAAGCCACCGCCAAAGCATAAGCCACCTTATGAACACCAGTTGTTAGAGTTGAATGGAAAACCTTCCAAGGGAGAGAAGCCATCGCAAGAGCACAATGAGCCTCGTAAGGGAGATAAGCCACCACCAGAGCGCAAACCAGGACATCCAGGTAATGGACTTCAAAAGGGTGAGAAGCCACCACCAAACCACAAACCACATCATGAAGAAAACACTGGACGCCATTTGCTAGAGTCTTCCTCAACTGAGTTGGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTTGATAAAAATGACGTTCACAAGCCATTCCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGAAGCCACCACATTCCGACCGTCAGCTTGGAGAGAATGCAGAGAAGGATGCCAGAGACCCACCACACAAGCCACCTCGGAAATTAAAGCCTCCGAGTACTGTTGCAAAGAAGCCTCCAACTGCCCCTCACAAACCTCCTTCTCCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

371

Amino Acids

41.21

Weight (kDa)

9.59

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccII	CGCG	1 cut(s)	78
AciI	CCGC	5 cut(s)	76, 140, 334, 602, 890
AclWI	GGATC	2 cut(s)	113, 318
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	2 cut(s)	499, 811
AfaI	GTAC	1 cut(s)	1060
AfiI	CCNNNNNNNGG	9 cut(s)	284, 340, 404, 458, 548, 662, 701, 746, 950
AgsI	TTSAA	3 cut(s)	104, 646, 755
AjnI	CCWGG	4 cut(s)	243, 439, 730, 739
AluBI	AGCT	1 cut(s)	988
AluI	AGCT	1 cut(s)	988
Alw21I	GWGCWC	4 cut(s)	252, 390, 471, 687
Alw26I	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
AlwI	GGATC	2 cut(s)	113, 318
Asp700I	GAANNNNTTC	2 cut(s)	358, 655
AspLEI	GCGC	1 cut(s)	726
AsuC2I	CCSGG	1 cut(s)	932
AxyI	CCTNAGG	1 cut(s)	546
BauI	CACGAG	2 cut(s)	381, 464
BbsI	GAAGAC	2 cut(s)	507, 819
Bbv12I	GWGCWC	4 cut(s)	252, 390, 471, 687
BccI	CCATC	7 cut(s)	59, 152, 265, 344, 527, 682, 839
BciT130I	CCWGG	4 cut(s)	245, 441, 732, 741
BclI	TGATCA	4 cut(s)	70, 82, 271, 328
BcnI	CCSGG	1 cut(s)	932
BcoDI	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
BfaI	CTAG	1 cut(s)	821
BisI	GCNGC	1 cut(s)	890
BlsI	GCNGC	1 cut(s)	891
BmcAI	AGTACT	1 cut(s)	1060
Bme1390I	CCNGG	5 cut(s)	245, 441, 732, 741, 932
BmrFI	CCNGG	5 cut(s)	245, 441, 732, 741, 932
BmsI	GCATC	1 cut(s)	1000
BpiI	GAAGAC	2 cut(s)	507, 819
BplI	GAGNNNNNCTC	2 cut(s)	815, 847
BpmI	CTGGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	932
BsaHI	GRCGYC	2 cut(s)	499, 811
BsaI	GGTCTC	2 cut(s)	338, 1011
BsaJI	CCNNGG	4 cut(s)	159, 439, 660, 1037
BsaWI	WCCGGW	2 cut(s)	307, 421
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
Bsc4I	CCNNNNNNNGG	9 cut(s)	284, 340, 404, 458, 548, 662, 701, 746, 950
Bse1I	ACTGG	3 cut(s)	9, 631, 811
Bse21I	CCTNAGG	1 cut(s)	546
BseBI	CCWGG	4 cut(s)	245, 441, 732, 741
BseDI	CCNNGG	4 cut(s)	159, 439, 660, 1037
BseGI	GGATG	5 cut(s)	144, 538, 736, 850, 1015
BseLI	CCNNNNNNNGG	9 cut(s)	284, 340, 404, 458, 548, 662, 701, 746, 950
BseMII	CTCAG	3 cut(s)	138, 537, 828
BseNI	ACTGG	3 cut(s)	9, 631, 811
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	982
BsiEI	CGRYCG	1 cut(s)	982
BsiHKAI	GWGCWC	4 cut(s)	252, 390, 471, 687
BsiSI	CCGG	3 cut(s)	308, 422, 932
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	9 cut(s)	284, 340, 404, 458, 548, 662, 701, 746, 950
BsmAI	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	1003
Bso31I	GGTCTC	2 cut(s)	338, 1011
Bsp1286I	GDGCHC	4 cut(s)	252, 390, 471, 687
Bsp143I	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	5 cut(s)	76, 140, 334, 602, 890
BspCNI	CTCAG	3 cut(s)	137, 536, 829
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	2 cut(s)	325, 793
BspPI	GGATC	2 cut(s)	113, 318
BspTNI	GGTCTC	2 cut(s)	338, 1011
BsrI	ACTGG	3 cut(s)	9, 631, 811
BssECI	CCNNGG	4 cut(s)	159, 439, 660, 1037
BssMI	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
BssNI	GRCGYC	2 cut(s)	499, 811
BssSI	CACGAG	2 cut(s)	381, 464
BssT1I	CCWWGG	2 cut(s)	159, 660
Bst2BI	CACGAG	2 cut(s)	381, 464
Bst2UI	CCWGG	4 cut(s)	245, 441, 732, 741
Bst4CI	ACNGT	3 cut(s)	43, 983, 1063
BstACI	GRCGYC	2 cut(s)	499, 811
BstC8I	GCNNGC	2 cut(s)	17, 446
BstDEI	CTNAG	6 cut(s)	124, 228, 363, 523, 546, 837
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	5 cut(s)	144, 538, 736, 850, 1015
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	6 cut(s)	73, 85, 121, 274, 313, 331
BstMAI	GTCTC	5 cut(s)	175, 338, 363, 858, 1011
BstMBI	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
BstMCI	CGRYCG	1 cut(s)	982
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 691
BstNI	CCWGG	4 cut(s)	245, 441, 732, 741
BstSCI	CCNGG	5 cut(s)	243, 439, 730, 739, 930
BstUI	CGCG	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	507, 819
Bsu36I	CCTNAGG	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	2 cut(s)	93, 660
BtsCI	GGATG	5 cut(s)	144, 538, 736, 850, 1015
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	580, 804
Cac8I	GCNNGC	2 cut(s)	17, 446
CciI	TCATGA	2 cut(s)	325, 793
CfoI	GCGC	1 cut(s)	726
CseI	GACGC	1 cut(s)	819
Csp6I	GTAC	1 cut(s)	1059
CviAII	CATG	4 cut(s)	160, 326, 482, 794
CviQI	GTAC	1 cut(s)	1059
DdeI	CTNAG	6 cut(s)	124, 228, 363, 523, 546, 837
DpnI	GATC	6 cut(s)	72, 84, 120, 273, 312, 330
DpnII	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
Eco130I	CCWWGG	2 cut(s)	159, 660
Eco31I	GGTCTC	2 cut(s)	338, 1011
Eco57I	CTGAAG	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	546
EcoRII	CCWGG	4 cut(s)	243, 439, 730, 739
EcoT14I	CCWWGG	2 cut(s)	159, 660
ErhI	CCWWGG	2 cut(s)	159, 660
FaeI	CATG	4 cut(s)	163, 329, 485, 797
FaiI	YATR	6 cut(s)	161, 327, 483, 612, 624, 795
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	4 cut(s)	159, 325, 481, 793
FbaI	TGATCA	4 cut(s)	70, 82, 271, 328
Fnu4HI	GCNGC	1 cut(s)	890
FokI	GGATG	5 cut(s)	131, 545, 723, 857, 1022
Fsp4HI	GCNGC	1 cut(s)	890
FspBI	CTAG	1 cut(s)	821
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	1 cut(s)	890
GsuI	CTGGAG	1 cut(s)	266
HapII	CCGG	3 cut(s)	308, 422, 932
HgaI	GACGC	1 cut(s)	819
HhaI	GCGC	1 cut(s)	726
Hin1I	GRCGYC	2 cut(s)	499, 811
Hin1II	CATG	4 cut(s)	163, 329, 485, 797
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	3 cut(s)	100, 512, 824
HpaII	CCGG	3 cut(s)	308, 422, 932
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	6 cut(s)	127, 183, 526, 979, 1041, 1056
Hpy188III	TCNNGA	3 cut(s)	326, 464, 794
Hpy8I	GTNNAC	1 cut(s)	919
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	6 cut(s)	15, 69, 188, 666, 1000, 1110
HpyCH4III	ACNGT	3 cut(s)	43, 983, 1063
HpyCH4IV	ACGT	3 cut(s)	492, 499, 915
HpyCH4V	TGCA	2 cut(s)	1001, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 691
HpyF3I	CTNAG	6 cut(s)	124, 228, 363, 523, 546, 837
HpySE526I	ACGT	3 cut(s)	492, 499, 915
Hsp92I	GRCGYC	2 cut(s)	499, 811
Hsp92II	CATG	4 cut(s)	163, 329, 485, 797
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	4 cut(s)	70, 82, 271, 328
Kzo9I	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
LmnI	GCTCC	1 cut(s)	247
LweI	GCATC	1 cut(s)	1000
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	3 cut(s)	492, 499, 915
MaeIII	GTNAC	6 cut(s)	37, 186, 300, 318, 375, 461
MalI	GATC	6 cut(s)	72, 84, 120, 273, 312, 330
MboI	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
MboII	GAAGA	6 cut(s)	20, 351, 507, 510, 809, 819
MhlI	GDGCHC	4 cut(s)	252, 390, 471, 687
MluCI	AATT	1 cut(s)	1043
MlyI	GAGTC	2 cut(s)	521, 833
MmeI	TCCRAC	4 cut(s)	510, 822, 1002, 1103
MroXI	GAANNNNTTC	2 cut(s)	358, 655
MseI	TTAA	2 cut(s)	224, 1046
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	3 cut(s)	308, 422, 932
MspR9I	CCNGG	5 cut(s)	245, 441, 732, 741, 932
Mva1269I	GAATGC	1 cut(s)	1003
MvaI	CCWGG	4 cut(s)	245, 441, 732, 741
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	394, 691
NciI	CCSGG	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
NlaIII	CATG	4 cut(s)	163, 329, 485, 797
NmuCI	GTSAC	6 cut(s)	37, 186, 300, 318, 375, 461
PagI	TCATGA	2 cut(s)	325, 793
PctI	GAATGC	1 cut(s)	1003
PdmI	GAANNNNTTC	2 cut(s)	358, 655
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	2 cut(s)	243, 930
PkrI	GCNGC	1 cut(s)	891
PleI	GAGTC	2 cut(s)	520, 832
PpsI	GAGTC	2 cut(s)	520, 832
Psp6I	CCWGG	4 cut(s)	243, 439, 730, 739
PspGI	CCWGG	4 cut(s)	243, 439, 730, 739
RsaI	GTAC	1 cut(s)	1060
RsaNI	GTAC	1 cut(s)	1059
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	224, 1046
SatI	GCNGC	1 cut(s)	890
Sau3AI	GATC	6 cut(s)	70, 82, 118, 271, 310, 328
ScaI	AGTACT	1 cut(s)	1060
SchI	GAGTC	2 cut(s)	521, 833
ScrFI	CCNGG	5 cut(s)	245, 441, 732, 741, 932
SduI	GDGCHC	4 cut(s)	252, 390, 471, 687
SfaNI	GCATC	1 cut(s)	1000
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	1043
SsiI	CCGC	5 cut(s)	76, 140, 334, 602, 890
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	5 cut(s)	243, 439, 730, 739, 930
StyI	CCWWGG	2 cut(s)	159, 660
TaaI	ACNGT	3 cut(s)	43, 983, 1063
TaiI	ACGT	3 cut(s)	495, 502, 918
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	1043
TatI	WGTACW	1 cut(s)	1058
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	224, 1046
Tru9I	TTAA	2 cut(s)	224, 1046
TscAI	CASTG	2 cut(s)	580, 811
TseFI	GTSAC	6 cut(s)	37, 186, 300, 318, 375, 461
Tsp45I	GTSAC	6 cut(s)	37, 186, 300, 318, 375, 461
TspDTI	ATGAA	3 cut(s)	498, 639, 810
TspRI	CASTG	2 cut(s)	580, 811
Van91I	CCANNNNNTGG	1 cut(s)	746
XmnI	GAANNNNTTC	2 cut(s)	358, 655
XspI	CTAG	1 cut(s)	821
ZraI	GACGTC	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.