Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

73080505 .. 73081579

Gene Structure 1075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACAAGACAAGATATTCGTACATACGTGTTTGTTTGGGGGGGGGGGGGGGGAGGGTTTTGCAGTAGCAGGGCTCTTGCGCTGGAGTCTCGTGATTGGGAAGGATTTCGATCAAGATCTGGATCAGATCCGACCGAGCAGGGCAAGGCTCAAGGCTGGTCAGGAGCTGGTAGCATGGGTGAGGATGTTGGCAACGCAAATGCAAATGGTCTAATCATGGCAGGGACGGGGTTTCAGTTCCTAATGGATGATGGTGACAGGTCTTGTGTCAACCACAGTGGTAGAGGCGGCGCAAAGCTACATACTCCAAAAAGAGAAGGCTGGGGCACTTTGGGTGCTCCAACCTGTGAGAGAGACCCTCCGCCTAAAGTTGCAAAGGCGAGGGAGCTTGCTTCGTCTTCGTGCAGCGGCAATGATCGGAGCAACAGAGGAAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.37

Weight (kDa)

8.82

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	439
AciI	CCGC	3 cut(s)	288, 362, 408
AclWI	GGATC	2 cut(s)	122, 130
AfaI	GTAC	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	27
AluBI	AGCT	3 cut(s)	167, 298, 388
AluI	AGCT	3 cut(s)	167, 298, 388
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	2 cut(s)	93, 348
AlwI	GGATC	2 cut(s)	122, 130
AlwNI	CAGNNNCTG	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	405
ArsI	GACNNNNNNTTYG	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	2 cut(s)	82, 293
AsuHPI	GGTGA	2 cut(s)	191, 266
BaeGI	GKGCMC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	93, 348
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	3 cut(s)	289, 406, 409
BlsI	GCNGC	3 cut(s)	290, 407, 410
BpiI	GAAGAC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpmI	CTGGAG	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	28
BsaBI	GATNNNNATC	3 cut(s)	109, 115, 121
BsaI	GGTCTC	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	418
Bse8I	GATNNNNATC	3 cut(s)	109, 115, 121
BseGI	GGATG	2 cut(s)	190, 253
BseJI	GATNNNNATC	3 cut(s)	109, 115, 121
BseMI	GCAATG	1 cut(s)	418
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	417
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	93, 348
BsmFI	GGGAC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	3 cut(s)	76, 329, 340
Bsp143I	GATC	5 cut(s)	110, 116, 122, 127, 415
BspACI	CCGC	3 cut(s)	288, 362, 408
BspPI	GGATC	2 cut(s)	122, 130
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	418
BssMI	GATC	5 cut(s)	110, 116, 122, 127, 415
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	190, 253
BstHHI	GCGC	2 cut(s)	82, 293
BstKTI	GATC	5 cut(s)	113, 119, 125, 130, 418
BstMAI	GTCTC	2 cut(s)	93, 348
BstMBI	GATC	5 cut(s)	110, 116, 122, 127, 415
BstMCI	CGRYCG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	116, 127
BstYI	RGATCY	2 cut(s)	116, 127
BtsCI	GGATG	2 cut(s)	190, 253
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	82, 293
Csp6I	GTAC	1 cut(s)	21
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	2 cut(s)	175, 217
CviJI	RGCY	7 cut(s)	74, 149, 156, 167, 298, 321, 388
CviKI_1	RGCY	7 cut(s)	74, 149, 156, 167, 298, 321, 388
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	5 cut(s)	112, 118, 124, 129, 417
DpnII	GATC	5 cut(s)	110, 116, 122, 127, 415
EciI	GGCGGA	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	2 cut(s)	178, 220
FaiI	YATR	5 cut(s)	25, 176, 218, 303, 439
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	174, 216
Fnu4HI	GCNGC	3 cut(s)	289, 406, 409
FokI	GGATG	2 cut(s)	197, 260
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	3 cut(s)	289, 406, 409
GlaI	GCGC	2 cut(s)	81, 292
GluI	GCNGC	3 cut(s)	289, 406, 409
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	104
HhaI	GCGC	2 cut(s)	82, 293
Hin1II	CATG	2 cut(s)	178, 220
Hin6I	GCGC	2 cut(s)	80, 291
HinP1I	GCGC	2 cut(s)	80, 291
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	2 cut(s)	191, 266
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	127, 132, 420
Hpy188III	TCNNGA	4 cut(s)	92, 114, 120, 162
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	95, 311
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	63, 203, 374, 405
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	178, 220
HspAI	GCGC	2 cut(s)	80, 291
Kzo9I	GATC	5 cut(s)	110, 116, 122, 127, 415
LmnI	GCTCC	4 cut(s)	164, 343, 385, 420
Lsp1109I	GCAGC	1 cut(s)	417
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	5 cut(s)	112, 118, 124, 129, 417
MboI	GATC	5 cut(s)	110, 116, 122, 127, 415
MboII	GAAGA	1 cut(s)	390
MflI	RGATCY	2 cut(s)	116, 127
MhlI	GDGCHC	3 cut(s)	76, 329, 340
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	155, 365
MnlI	CCTC	6 cut(s)	47, 175, 278, 369, 375, 422
MroXI	GAANNNNTTC	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	408
NdeII	GATC	5 cut(s)	110, 116, 122, 127, 415
NlaIII	CATG	2 cut(s)	178, 220
NmuCI	GTSAC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	290, 407, 410
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	116, 127
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SatI	GCNGC	3 cut(s)	289, 406, 409
Sau3AI	GATC	5 cut(s)	110, 116, 122, 127, 415
SchI	GAGTC	1 cut(s)	95
SduI	GDGCHC	3 cut(s)	76, 329, 340
SetI	ASST	6 cut(s)	30, 169, 263, 300, 347, 390
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SsiI	CCGC	3 cut(s)	288, 362, 408
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	149
TauI	GCSGC	2 cut(s)	291, 411
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	254
TspRI	CASTG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.