Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

11224653 .. 11225718

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG057900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGGAAGTCCCTCCCCTTCAGAAGTCACCACAACCACCCAAACACATGCCTCCAACCACATTAACTAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTGAGGGAGAGAAGCTACCACCGGAGCACAAGCCTGGAAAACCTTCCAAGGGAGAAAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCGGAAAACAAACATGCCGGAGAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCGAAAACAAACATGCCTGAGAAGCGTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCGAAAACAAACATGCCAGAGAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCTAAAGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGCTTGTTGGAGATCAATGGAAAACCTTCCAAGGGAGAAAAGCGTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGAATCCAAAAACAAACATGCCAGAGAAGCCACCATCAACAGTTCATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.57

Weight (kDa)

8.96

Isoelectric Point (pI)

80.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	7 cut(s)	231, 281, 294, 344, 357, 407, 420
AcuI	CTGAAG	1 cut(s)	5
AcvI	CACGTG	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	4 cut(s)	93, 156, 444, 462
AlwI	GGATC	7 cut(s)	231, 281, 294, 344, 357, 407, 420
Ama87I	CYCGRG	1 cut(s)	86
Asp700I	GAANNNNTTC	2 cut(s)	169, 487
AsuHPI	GGTGA	2 cut(s)	21, 140
AvaI	CYCGRG	1 cut(s)	86
BamHI	GGATCC	3 cut(s)	286, 349, 412
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	4 cut(s)	93, 156, 444, 462
BccI	CCATC	2 cut(s)	106, 580
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	3 cut(s)	288, 351, 414
BmrFI	CCNGG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	174, 492
BsaWI	WCCGGW	2 cut(s)	148, 436
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	174, 492
BseMII	CTCAG	1 cut(s)	297
BseRI	GAGGAG	3 cut(s)	180, 243, 369
BsiHKAI	GWGCWC	4 cut(s)	93, 156, 444, 462
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	149, 242, 437
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	4 cut(s)	93, 156, 444, 462
Bsp143I	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
BspACI	CCGC	1 cut(s)	463
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	288, 351, 414
BspPI	GGATC	7 cut(s)	231, 281, 294, 344, 357, 407, 420
BssECI	CCNNGG	2 cut(s)	174, 492
BssMI	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
BssT1I	CCWWGG	2 cut(s)	174, 492
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	580
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	69, 306
BstENI	CCTNNNNNAGG	5 cut(s)	216, 279, 342, 405, 534
BstKTI	GATC	6 cut(s)	115, 226, 289, 352, 415, 477
BstMBI	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	247, 310, 373, 565
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	5 cut(s)	52, 241, 304, 367, 559
BstSCI	CCNGG	1 cut(s)	160
BstX2I	RGATCY	3 cut(s)	286, 349, 412
BstYI	RGATCY	3 cut(s)	286, 349, 412
CciI	TCATGA	1 cut(s)	454
CseI	GACGC	2 cut(s)	302, 494
CviAII	CATG	6 cut(s)	49, 238, 301, 364, 455, 556
DdeI	CTNAG	2 cut(s)	69, 306
DpnI	GATC	6 cut(s)	114, 225, 288, 351, 414, 476
DpnII	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
Eco130I	CCWWGG	2 cut(s)	174, 492
Eco57I	CTGAAG	1 cut(s)	5
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	5 cut(s)	216, 279, 342, 405, 534
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	174, 492
ErhI	CCWWGG	2 cut(s)	174, 492
FaeI	CATG	6 cut(s)	52, 241, 304, 367, 458, 559
FaiI	YATR	6 cut(s)	50, 239, 302, 365, 456, 557
FatI	CATG	6 cut(s)	48, 237, 300, 363, 454, 555
FbaI	TGATCA	1 cut(s)	112
HapII	CCGG	3 cut(s)	149, 242, 437
HgaI	GACGC	2 cut(s)	302, 494
Hin1II	CATG	6 cut(s)	52, 241, 304, 367, 458, 559
HinfI	GANTC	1 cut(s)	541
HpaII	CCGG	3 cut(s)	149, 242, 437
HphI	GGTGA	2 cut(s)	21, 140
Hpy188I	TCNGA	9 cut(s)	24, 201, 228, 264, 291, 327, 354, 390, 519
Hpy188III	TCNNGA	1 cut(s)	455
HpyAV	CCTTC	3 cut(s)	29, 180, 498
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	247, 310, 373, 565
HpyF3I	CTNAG	2 cut(s)	69, 306
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	6 cut(s)	52, 241, 304, 367, 458, 559
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
LmnI	GCTCC	2 cut(s)	151, 439
LpnPI	CCDG	8 cut(s)	147, 162, 174, 255, 318, 381, 450, 573
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	6 cut(s)	114, 225, 288, 351, 414, 476
MboI	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
MflI	RGATCY	3 cut(s)	286, 349, 412
MhlI	GDGCHC	4 cut(s)	93, 156, 444, 462
MmeI	TCCRAC	2 cut(s)	80, 450
MroXI	GAANNNNTTC	2 cut(s)	169, 487
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	5 cut(s)	201, 264, 327, 390, 519
MspI	CCGG	3 cut(s)	149, 242, 437
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	4 cut(s)	247, 310, 373, 565
NdeII	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
NlaIII	CATG	6 cut(s)	52, 241, 304, 367, 458, 559
NlaIV	GGNNCC	3 cut(s)	288, 351, 414
NmuCI	GTSAC	1 cut(s)	27
NspI	RCATGY	5 cut(s)	52, 241, 304, 367, 559
PagI	TCATGA	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	169, 487
PfeI	GAWTC	1 cut(s)	541
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	288, 351, 414
PsuI	RGATCY	3 cut(s)	286, 349, 412
RseI	CAYNNNNRTG	5 cut(s)	201, 264, 327, 390, 519
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	6 cut(s)	112, 223, 286, 349, 412, 474
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	4 cut(s)	93, 156, 444, 462
SetI	ASST	6 cut(s)	112, 121, 144, 172, 454, 490
SmiMI	CAYNNNNRTG	5 cut(s)	201, 264, 327, 390, 519
SsiI	CCGC	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	2 cut(s)	174, 492
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	5 cut(s)	231, 294, 357, 420, 549
XagI	CCTNNNNNAGG	5 cut(s)	216, 279, 342, 405, 534
XceI	RCATGY	5 cut(s)	52, 241, 304, 367, 559
XmnI	GAANNNNTTC	2 cut(s)	169, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.