Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

8541424 .. 8542736

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCTTCCAACTATTTGCTTCTATTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTTTTTCTGATCACCGCAAACCACCTTTTCATAAGCCTCCTACTCATCCATCGGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCCCTCCCCTTCAGAAGTCACCACAACCACCCAAACACATGCCTCCAACCACATTAACTAAGCAAGAGCCACTCCCGGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTGAGGGAGAGAAGCCACCACCGAAGCACAAGCCTGGAAAACCTTCCAAGGGAGAAAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCGGAAAACAAACATGCCGGAGAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCGAAAACAAACATGCCGGAGAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCGAAAACAAACATGCTACAGAAGCCTCCTCAACATCAGAGAATCGCTCATGAGATCCACTTCTTAATAAGATACCGTCAAATTAACTGTTCTGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.33

Weight (kDa)

9.66

Isoelectric Point (pI)

68.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	6 cut(s)	378, 428, 441, 491, 504, 547
AcuI	CTGAAG	1 cut(s)	152
AcvI	CACGTG	1 cut(s)	257
AfiI	CCNNNNNNNGG	8 cut(s)	272, 323, 362, 365, 425, 428, 488, 491
AjnI	CCWGG	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	6 cut(s)	378, 428, 441, 491, 504, 547
Asp700I	GAANNNNTTC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	65, 168, 287
AvaII	GGWCC	1 cut(s)	115
BamHI	GGATCC	2 cut(s)	433, 496
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	3 cut(s)	118, 140, 253
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	2 cut(s)	70, 259
BcnI	CCSGG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	515
Bme1390I	CCNGG	2 cut(s)	233, 309
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	435, 498
BmrFI	CCNGG	2 cut(s)	233, 309
BplI	GAGNNNNNCTC	8 cut(s)	340, 372, 403, 435, 466, 498, 529, 561
BpuMI	CCSGG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	147, 321
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
Bsc4I	CCNNNNNNNGG	8 cut(s)	272, 323, 362, 365, 425, 428, 488, 491
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	147, 321
BseGI	GGATG	2 cut(s)	106, 132
BseLI	CCNNNNNNNGG	8 cut(s)	272, 323, 362, 365, 425, 428, 488, 491
BseRI	GAGGAG	4 cut(s)	327, 390, 453, 516
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	233, 389, 452
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	8 cut(s)	272, 323, 362, 365, 425, 428, 488, 491
BsmFI	GGGAC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	435, 498
BspPI	GGATC	6 cut(s)	378, 428, 441, 491, 504, 547
BssECI	CCNNGG	2 cut(s)	147, 321
BssMI	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
BssT1I	CCWWGG	2 cut(s)	147, 321
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	575, 587
BstBAI	YACGTR	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	147
BstENI	CCTNNNNNAGG	3 cut(s)	363, 426, 489
BstF5I	GGATG	2 cut(s)	106, 132
BstKTI	GATC	6 cut(s)	73, 262, 373, 436, 499, 555
BstMBI	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 457, 520
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	4 cut(s)	199, 388, 451, 514
BstSCI	CCNGG	2 cut(s)	231, 307
BstSFI	CTRYAG	1 cut(s)	515
BstX2I	RGATCY	3 cut(s)	433, 496, 552
BstYI	RGATCY	3 cut(s)	433, 496, 552
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	106, 132
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	115
CviAII	CATG	6 cut(s)	148, 196, 385, 448, 511, 548
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	6 cut(s)	72, 261, 372, 435, 498, 554
DpnII	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
Eco130I	CCWWGG	2 cut(s)	147, 321
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	257
EcoNI	CCTNNNNNAGG	3 cut(s)	363, 426, 489
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	147, 321
ErhI	CCWWGG	2 cut(s)	147, 321
FaeI	CATG	6 cut(s)	151, 199, 388, 451, 514, 551
FaiI	YATR	7 cut(s)	93, 149, 197, 386, 449, 512, 549
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	6 cut(s)	147, 195, 384, 447, 510, 547
FbaI	TGATCA	2 cut(s)	70, 259
FokI	GGATG	2 cut(s)	93, 119
HapII	CCGG	3 cut(s)	233, 389, 452
Hin1II	CATG	6 cut(s)	151, 199, 388, 451, 514, 551
HinfI	GANTC	1 cut(s)	540
HpaII	CCGG	3 cut(s)	233, 389, 452
HphI	GGTGA	3 cut(s)	65, 168, 287
Hpy188III	TCNNGA	1 cut(s)	548
HpyAV	CCTTC	3 cut(s)	15, 176, 327
HpyCH4III	ACNGT	2 cut(s)	575, 587
HpyCH4IV	ACGT	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 457, 520
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	6 cut(s)	151, 199, 388, 451, 514, 551
Ksp22I	TGATCA	2 cut(s)	70, 259
Kzo9I	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	6 cut(s)	246, 294, 321, 402, 465, 576
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	6 cut(s)	72, 261, 372, 435, 498, 554
MboI	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	3 cut(s)	433, 496, 552
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	579
MmeI	TCCRAC	2 cut(s)	33, 227
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	4 cut(s)	212, 563, 582, 598
MslI	CAYNNNNRTG	3 cut(s)	348, 411, 474
MspI	CCGG	3 cut(s)	233, 389, 452
MspR9I	CCNGG	2 cut(s)	233, 309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	394, 457, 520
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
NlaIII	CATG	6 cut(s)	151, 199, 388, 451, 514, 551
NlaIV	GGNNCC	2 cut(s)	435, 498
NmuCI	GTSAC	1 cut(s)	174
NspI	RCATGY	4 cut(s)	199, 388, 451, 514
PagI	TCATGA	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	540
PfoI	TCCNGGA	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	307
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	435, 498
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	3 cut(s)	433, 496, 552
RseI	CAYNNNNRTG	3 cut(s)	348, 411, 474
SaqAI	TTAA	4 cut(s)	212, 563, 582, 598
Sau3AI	GATC	6 cut(s)	70, 259, 370, 433, 496, 552
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	233, 309
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	4 cut(s)	88, 259, 268, 319
SfcI	CTRYAG	1 cut(s)	515
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	3 cut(s)	348, 411, 474
Sse9I	AATT	1 cut(s)	579
SsiI	CCGC	1 cut(s)	76
StyD4I	CCNGG	2 cut(s)	231, 307
StyI	CCWWGG	2 cut(s)	147, 321
TaaI	ACNGT	2 cut(s)	575, 587
TaiI	ACGT	1 cut(s)	259
TasI	AATT	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	4 cut(s)	212, 563, 582, 598
Tru9I	TTAA	4 cut(s)	212, 563, 582, 598
TseFI	GTSAC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	3 cut(s)	378, 441, 504
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	3 cut(s)	363, 426, 489
XceI	RCATGY	4 cut(s)	199, 388, 451, 514
XmnI	GAANNNNTTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.