Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000498.1

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

155767 .. 156852

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000498.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggttttcactaccactccttctcttgctgatcaccgcgatgatcaccacaagccaccgattcaaaagcctcctactcatccctcagacaaccacaaaccgcccatccacaaacctcccatggtggaagtctctcaccttcagaagtcaccacaaccccccaaacacaagcctccaacaacattaattaagcaagagccactcccggagcacaaaccatcaaccccacgtgaacaacctccaaagggtaagggagagaagccaccaccggagcacaagtcacctcatgatcaccgcttattggagaccgatggaaaatcttctaagggagatatgtcaccacgagagcacaatgagcctcgtaagggagaaaagccaccaccggagaacaaaggaaacccaggcgagcaacctcacaagggtcacgagcacaaacctccccatgaacaaaacgtcggacgtcgtttgttagagtcttcttcctcagagttggatggtaagccacctaagggtgagaagccaccacaagaacgcagtgagcctcacaaggaagttaagccaccaccgaagcataagccacctcatgaacaccagttgttagagttggatggaaaaccttccaagggagagaagccatcgcaagagcacaatcagcctcgtaagggagataagccaccaccagagcacaaaccaggacatccaggtaatgaacttcataagggtgagaagccgccaccaaaccacaaaccacctcacgaacaaaacactggacgccgtttgctagagtcttcctcaactgagttggatggtaagtctcctaaaggaaagaagacaccccccaaacacaagccgccaaccccactcgacaaaaatgatgatcacaagccattcccggaacacaagccaccaaagggtaagggagagaagccaccacatcacgaccgtgaccttggagagaatgcagagaaggatgccagagacacagcacacaagccacctcggaaattaaagcctccaagtactgttgcaaagaagcctccaactgcccctcacaagccaccttacaaacctccatctccctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

361

Amino Acids

40.43

Weight (kDa)

9.62

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	463
AccII	CGCG	1 cut(s)	39
AciI	CCGC	5 cut(s)	37, 101, 295, 731, 851
AcuI	CTGAAG	1 cut(s)	125
AcvI	CACGTG	1 cut(s)	230
AcyI	GRCGYC	2 cut(s)	460, 772
AfaI	GTAC	1 cut(s)	1021
AfiI	CCNNNNNNNGG	8 cut(s)	245, 301, 365, 419, 509, 623, 662, 911
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	3 cut(s)	400, 691, 700
AleI	CACNNNNGTG	1 cut(s)	942
Alw21I	GWGCWC	6 cut(s)	213, 276, 351, 432, 648, 687
Alw26I	GTCTC	4 cut(s)	136, 299, 819, 972
AseI	ATTAAT	1 cut(s)	185
Asp700I	GAANNNNTTC	2 cut(s)	319, 616
AsuC2I	CCSGG	2 cut(s)	206, 893
AsuHPI	GGTGA	9 cut(s)	26, 38, 128, 141, 273, 284, 330, 524, 734
AxyI	CCTNAGG	1 cut(s)	507
BauI	CACGAG	2 cut(s)	342, 425
BbrPI	CACGTG	1 cut(s)	230
BbsI	GAAGAC	3 cut(s)	468, 780, 836
Bbv12I	GWGCWC	6 cut(s)	213, 276, 351, 432, 648, 687
BccI	CCATC	8 cut(s)	113, 226, 305, 488, 602, 643, 800, 1081
BceAI	ACGGC	1 cut(s)	759
BciT130I	CCWGG	3 cut(s)	402, 693, 702
BclI	TGATCA	4 cut(s)	31, 43, 289, 877
BcnI	CCSGG	2 cut(s)	206, 893
BcoDI	GTCTC	4 cut(s)	136, 299, 819, 972
BfaI	CTAG	1 cut(s)	782
BisI	GCNGC	2 cut(s)	731, 851
BlsI	GCNGC	2 cut(s)	732, 852
BmcAI	AGTACT	1 cut(s)	1021
Bme1390I	CCNGG	5 cut(s)	206, 402, 693, 702, 893
BmrFI	CCNGG	5 cut(s)	206, 402, 693, 702, 893
BmsI	GCATC	1 cut(s)	961
BpiI	GAAGAC	3 cut(s)	468, 780, 836
BplI	GAGNNNNNCTC	2 cut(s)	776, 808
BpuMI	CCSGG	2 cut(s)	206, 893
BsaAI	YACGTR	1 cut(s)	230
BsaHI	GRCGYC	2 cut(s)	460, 772
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	5 cut(s)	120, 400, 621, 949, 998
BsaWI	WCCGGW	2 cut(s)	268, 382
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 263, 293
Bsc4I	CCNNNNNNNGG	8 cut(s)	245, 301, 365, 419, 509, 623, 662, 911
Bse1I	ACTGG	2 cut(s)	592, 772
Bse21I	CCTNAGG	1 cut(s)	507
BseBI	CCWGG	3 cut(s)	402, 693, 702
BseDI	CCNNGG	5 cut(s)	120, 400, 621, 949, 998
BseGI	GGATG	7 cut(s)	79, 105, 499, 613, 697, 811, 976
BseLI	CCNNNNNNNGG	8 cut(s)	245, 301, 365, 419, 509, 623, 662, 911
BseMII	CTCAG	3 cut(s)	99, 498, 789
BseNI	ACTGG	2 cut(s)	592, 772
Bsh1236I	CGCG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	943
BsiEI	CGRYCG	1 cut(s)	943
BsiHKAI	GWGCWC	6 cut(s)	213, 276, 351, 432, 648, 687
BsiSI	CCGG	4 cut(s)	206, 269, 383, 893
BslI	CCNNNNNNNGG	8 cut(s)	245, 301, 365, 419, 509, 623, 662, 911
BsmAI	GTCTC	4 cut(s)	136, 299, 819, 972
BsmI	GAATGC	1 cut(s)	964
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	6 cut(s)	213, 276, 351, 432, 648, 687
Bsp143I	GATC	4 cut(s)	31, 43, 289, 877
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	5 cut(s)	37, 101, 295, 731, 851
BspCNI	CTCAG	3 cut(s)	98, 497, 790
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	2 cut(s)	286, 583
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	592, 772
BssECI	CCNNGG	5 cut(s)	120, 400, 621, 949, 998
BssMI	GATC	4 cut(s)	31, 43, 289, 877
BssNI	GRCGYC	2 cut(s)	460, 772
BssSI	CACGAG	2 cut(s)	342, 425
BssT1I	CCWWGG	3 cut(s)	120, 621, 949
Bst2BI	CACGAG	2 cut(s)	342, 425
Bst2UI	CCWGG	3 cut(s)	402, 693, 702
Bst4CI	ACNGT	2 cut(s)	944, 1024
BstACI	GRCGYC	2 cut(s)	460, 772
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	5 cut(s)	85, 324, 484, 507, 798
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	7 cut(s)	79, 105, 499, 613, 697, 811, 976
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	4 cut(s)	34, 46, 292, 880
BstMAI	GTCTC	4 cut(s)	136, 299, 819, 972
BstMBI	GATC	4 cut(s)	31, 43, 289, 877
BstMCI	CGRYCG	1 cut(s)	943
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 652
BstNI	CCWGG	3 cut(s)	402, 693, 702
BstSCI	CCNGG	5 cut(s)	204, 400, 691, 700, 891
BstUI	CGCG	1 cut(s)	39
BstV2I	GAAGAC	3 cut(s)	468, 780, 836
Bsu36I	CCTNAGG	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	2 cut(s)	54, 621
BtsCI	GGATG	7 cut(s)	79, 105, 499, 613, 697, 811, 976
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	541, 765
Cac8I	GCNNGC	1 cut(s)	407
CciI	TCATGA	2 cut(s)	286, 583
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	1020
CviAII	CATG	4 cut(s)	121, 287, 443, 584
CviQI	GTAC	1 cut(s)	1020
DdeI	CTNAG	5 cut(s)	85, 324, 484, 507, 798
DpnI	GATC	4 cut(s)	33, 45, 291, 879
DpnII	GATC	4 cut(s)	31, 43, 289, 877
Eco130I	CCWWGG	3 cut(s)	120, 621, 949
Eco31I	GGTCTC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	125
Eco72I	CACGTG	1 cut(s)	230
Eco81I	CCTNAGG	1 cut(s)	507
EcoRII	CCWGG	3 cut(s)	400, 691, 700
EcoT14I	CCWWGG	3 cut(s)	120, 621, 949
ErhI	CCWWGG	3 cut(s)	120, 621, 949
FaeI	CATG	4 cut(s)	124, 290, 446, 587
FaiI	YATR	7 cut(s)	122, 288, 335, 444, 573, 585, 717
FatI	CATG	4 cut(s)	120, 286, 442, 583
FbaI	TGATCA	4 cut(s)	31, 43, 289, 877
Fnu4HI	GCNGC	2 cut(s)	731, 851
FokI	GGATG	7 cut(s)	66, 92, 506, 620, 684, 818, 983
Fsp4HI	GCNGC	2 cut(s)	731, 851
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	2 cut(s)	731, 851
HapII	CCGG	4 cut(s)	206, 269, 383, 893
HgaI	GACGC	1 cut(s)	780
Hin1I	GRCGYC	2 cut(s)	460, 772
Hin1II	CATG	4 cut(s)	124, 290, 446, 587
HinfI	GANTC	3 cut(s)	61, 473, 785
HpaII	CCGG	4 cut(s)	206, 269, 383, 893
HphI	GGTGA	9 cut(s)	26, 38, 128, 141, 273, 284, 330, 524, 734
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	5 cut(s)	88, 144, 458, 487, 1002
Hpy188III	TCNNGA	5 cut(s)	287, 425, 584, 755, 938
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	2 cut(s)	458, 465
HpyAV	CCTTC	4 cut(s)	30, 149, 627, 961
HpyCH4III	ACNGT	2 cut(s)	944, 1024
HpyCH4IV	ACGT	3 cut(s)	229, 453, 460
HpyCH4V	TGCA	2 cut(s)	962, 1028
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 652
HpyF3I	CTNAG	5 cut(s)	85, 324, 484, 507, 798
HpySE526I	ACGT	3 cut(s)	229, 453, 460
Hsp92I	GRCGYC	2 cut(s)	460, 772
Hsp92II	CATG	4 cut(s)	124, 290, 446, 587
Ksp22I	TGATCA	4 cut(s)	31, 43, 289, 877
Kzo9I	GATC	4 cut(s)	31, 43, 289, 877
LmnI	GCTCC	2 cut(s)	208, 271
LweI	GCATC	1 cut(s)	961
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	3 cut(s)	229, 453, 460
MaeIII	GTNAC	5 cut(s)	147, 279, 336, 422, 944
MalI	GATC	4 cut(s)	33, 45, 291, 879
MboI	GATC	4 cut(s)	31, 43, 289, 877
MboII	GAAGA	5 cut(s)	312, 468, 471, 780, 841
MhlI	GDGCHC	6 cut(s)	213, 276, 351, 432, 648, 687
MluCI	AATT	2 cut(s)	186, 1004
MlyI	GAGTC	2 cut(s)	482, 794
MmeI	TCCRAC	6 cut(s)	200, 436, 471, 585, 783, 1064
MroXI	GAANNNNTTC	2 cut(s)	319, 616
MseI	TTAA	4 cut(s)	185, 189, 555, 1007
MslI	CAYNNNNRTG	3 cut(s)	39, 720, 942
MspI	CCGG	4 cut(s)	206, 269, 383, 893
MspR9I	CCNGG	5 cut(s)	206, 402, 693, 702, 893
Mva1269I	GAATGC	1 cut(s)	964
MvaI	CCWGG	3 cut(s)	402, 693, 702
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	355, 652
NciI	CCSGG	2 cut(s)	206, 893
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	4 cut(s)	31, 43, 289, 877
NlaIII	CATG	4 cut(s)	124, 290, 446, 587
NmuCI	GTSAC	5 cut(s)	147, 279, 336, 422, 944
OliI	CACNNNNGTG	1 cut(s)	942
PacI	TTAATTAA	1 cut(s)	189
PagI	TCATGA	2 cut(s)	286, 583
PctI	GAATGC	1 cut(s)	964
PdmI	GAANNNNTTC	2 cut(s)	319, 616
PfeI	GAWTC	1 cut(s)	61
PfoI	TCCNGGA	2 cut(s)	204, 891
PkrI	GCNGC	2 cut(s)	732, 852
PleI	GAGTC	2 cut(s)	481, 793
PmaCI	CACGTG	1 cut(s)	230
PmlI	CACGTG	1 cut(s)	230
PpsI	GAGTC	2 cut(s)	481, 793
Ppu21I	YACGTR	1 cut(s)	230
PshBI	ATTAAT	1 cut(s)	185
Psp6I	CCWGG	3 cut(s)	400, 691, 700
PspCI	CACGTG	1 cut(s)	230
PspGI	CCWGG	3 cut(s)	400, 691, 700
RsaI	GTAC	1 cut(s)	1021
RsaNI	GTAC	1 cut(s)	1020
RseI	CAYNNNNRTG	3 cut(s)	39, 720, 942
SaqAI	TTAA	4 cut(s)	185, 189, 555, 1007
SatI	GCNGC	2 cut(s)	731, 851
Sau3AI	GATC	4 cut(s)	31, 43, 289, 877
ScaI	AGTACT	1 cut(s)	1021
SchI	GAGTC	2 cut(s)	482, 794
ScrFI	CCNGG	5 cut(s)	206, 402, 693, 702, 893
SduI	GDGCHC	6 cut(s)	213, 276, 351, 432, 648, 687
SfaNI	GCATC	1 cut(s)	961
SmiMI	CAYNNNNRTG	3 cut(s)	39, 720, 942
Sse9I	AATT	2 cut(s)	186, 1004
SsiI	CCGC	5 cut(s)	37, 101, 295, 731, 851
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	5 cut(s)	204, 400, 691, 700, 891
StyI	CCWWGG	3 cut(s)	120, 621, 949
TaaI	ACNGT	2 cut(s)	944, 1024
TaiI	ACGT	3 cut(s)	232, 456, 463
TaqI	TCGA	1 cut(s)	864
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	2 cut(s)	186, 1004
TatI	WGTACW	1 cut(s)	1019
TauI	GCSGC	2 cut(s)	733, 853
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	4 cut(s)	185, 189, 555, 1007
Tru9I	TTAA	4 cut(s)	185, 189, 555, 1007
TscAI	CASTG	2 cut(s)	541, 772
TseFI	GTSAC	5 cut(s)	147, 279, 336, 422, 944
Tsp45I	GTSAC	5 cut(s)	147, 279, 336, 422, 944
TspDTI	ATGAA	4 cut(s)	459, 600, 704, 723
TspRI	CASTG	2 cut(s)	541, 772
VspI	ATTAAT	1 cut(s)	185
XmnI	GAANNNNTTC	2 cut(s)	319, 616
XspI	CTAG	1 cut(s)	782
ZraI	GACGTC	1 cut(s)	461
ZrmI	AGTACT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.