Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

832038 .. 833241

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGAATCGTAGAAAGGTTGAAAAGTTTCTGGATGATCACAAGTCTCATGTACCAACAAGATACTCCTATGCTGATATAAAGAAGATGACAAATGGATTCAAGAAGAAGTTAGGCGAAGCGGAAGACAGTCTTGTATCTATGACTGCTGCCAGAGGCTCTACAGGCTACATAGCACCTGAAGTGTTTAACGGAAACTTTGGCACCGTCTCCTACAAATCAGATGTGTATAGTTTCGGGATGCCAGTGCTTGAAGTTATTGGAGCTAGGAAGGAAACTGCTCTTACATCTAGCAACAGTGAGGTCTATCTTCCTGAATTGATTTATAAGACTCTAATTCGAGGAGAAGAGTTGAATTTGGAGCTAGCTGATGATGAAGATGCTAAAATTGCTAAGAGACTAGCAATTGTGGCACTTTGGTGCATCCAGTGGTACCCGGTGAACCGCCCTTCCATGAAAGCAGTTGTTAGAATGCTAGAAGGACCCTATGAAAGCTTGATCATGCCACCAAATCCATTTATTGCTTCCACAACTCATCAGATGGAACCAACAGCAACCCCATCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

190

Amino Acids

21.19

Weight (kDa)

6.33

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 157	1e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	35 - 159	2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	2 cut(s)	203, 432
AciI	CCGC	2 cut(s)	122, 445
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	54, 434
AgsI	TTSAA	4 cut(s)	23, 103, 254, 355
AleI	CACNNNNGTG	1 cut(s)	418
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	4 cut(s)	266, 364, 368, 495
AluI	AGCT	4 cut(s)	266, 364, 368, 495
Alw26I	GTCTC	3 cut(s)	51, 214, 391
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	27
Asp718I	GGTACC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	451
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	482
BanI	GGYRCC	2 cut(s)	203, 432
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	535, 568
BclI	TGATCA	2 cut(s)	37, 498
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	3 cut(s)	51, 214, 391
BfaI	CTAG	5 cut(s)	267, 291, 365, 401, 476
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	4 cut(s)	205, 434, 484, 546
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	3 cut(s)	231, 370, 432
BmtI	GCTAGC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	245, 427
BseGI	GGATG	3 cut(s)	40, 246, 423
BseNI	ACTGG	2 cut(s)	245, 427
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	136
BshNI	GGYRCC	2 cut(s)	203, 432
BsiSI	CCGG	1 cut(s)	437
BsmAI	GTCTC	3 cut(s)	51, 214, 391
BsmBI	CGTCTC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	37, 498
BspACI	CCGC	2 cut(s)	122, 445
BspLI	GGNNCC	4 cut(s)	205, 434, 484, 546
BspOI	GCTAGC	1 cut(s)	368
BspT107I	GGYRCC	2 cut(s)	203, 432
BsrI	ACTGG	2 cut(s)	245, 427
BssMI	GATC	2 cut(s)	37, 498
Bst4CI	ACNGT	3 cut(s)	131, 208, 299
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	3 cut(s)	40, 246, 423
BstKTI	GATC	2 cut(s)	40, 501
BstMAI	GTCTC	3 cut(s)	51, 214, 391
BstMBI	GATC	2 cut(s)	37, 498
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 389, 410
BstSCI	CCNGG	1 cut(s)	435
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	40, 246, 423
BtsIMutI	CAGTG	3 cut(s)	252, 304, 434
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	53, 433
CviAII	CATG	3 cut(s)	50, 454, 502
CviJI	RGCY	6 cut(s)	159, 168, 266, 364, 368, 495
CviKI_1	RGCY	6 cut(s)	159, 168, 266, 364, 368, 495
CviQI	GTAC	2 cut(s)	53, 433
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	39, 500
DpnII	GATC	2 cut(s)	37, 498
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	482
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	3 cut(s)	53, 457, 505
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	49, 453, 501
FbaI	TGATCA	2 cut(s)	37, 498
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	3 cut(s)	47, 253, 410
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	5 cut(s)	267, 291, 365, 401, 476
GluI	GCNGC	1 cut(s)	150
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	3 cut(s)	53, 457, 505
HindIII	AAGCTT	1 cut(s)	493
HinfI	GANTC	3 cut(s)	7, 99, 331
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	223, 540
Hpy188III	TCNNGA	4 cut(s)	32, 103, 238, 314
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	3 cut(s)	265, 459, 473
HpyCH4III	ACNGT	3 cut(s)	131, 208, 299
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 389, 410
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	53, 457, 505
KpnI	GGTACC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	37, 498
Kzo9I	GATC	2 cut(s)	37, 498
LmnI	GCTCC	2 cut(s)	263, 361
LpnPI	CCDG	8 cut(s)	17, 150, 166, 192, 258, 327, 440, 450
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	3 cut(s)	231, 370, 432
MaeI	CTAG	5 cut(s)	267, 291, 365, 401, 476
MalI	GATC	2 cut(s)	39, 500
MboI	GATC	2 cut(s)	37, 498
MboII	GAAGA	6 cut(s)	97, 118, 137, 302, 359, 389
MfeI	CAATTG	1 cut(s)	405
MluCI	AATT	5 cut(s)	317, 336, 355, 387, 405
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	3 cut(s)	149, 295, 335
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	189, 568
MslI	CAYNNNNRTG	1 cut(s)	418
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	437
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	165, 389, 410
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	2 cut(s)	37, 498
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	3 cut(s)	53, 457, 505
NlaIV	GGNNCC	4 cut(s)	205, 434, 484, 546
OliI	CACNNNNGTG	1 cut(s)	418
PctI	GAATGC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	7, 99
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	482
PsiI	TTATAA	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	482
PspN4I	GGNNCC	4 cut(s)	205, 434, 484, 546
PspPI	GGNCC	1 cut(s)	482
PspPPI	RGGWCCY	1 cut(s)	482
RsaI	GTAC	2 cut(s)	54, 434
RsaNI	GTAC	2 cut(s)	53, 433
RseI	CAYNNNNRTG	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	189, 568
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	37, 498
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	7 cut(s)	21, 181, 268, 306, 366, 370, 497
SfaNI	GCATC	3 cut(s)	231, 370, 432
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	418
Sse9I	AATT	5 cut(s)	317, 336, 355, 387, 405
SsiI	CCGC	2 cut(s)	122, 445
SspMI	CTAG	5 cut(s)	267, 291, 365, 401, 476
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	3 cut(s)	131, 208, 299
TaqI	TCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	317, 336, 355, 387, 405
TfiI	GAWTC	2 cut(s)	7, 99
Tru1I	TTAA	2 cut(s)	189, 568
Tru9I	TTAA	2 cut(s)	189, 568
TscAI	CASTG	3 cut(s)	252, 304, 434
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	390, 470, 504
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	3 cut(s)	252, 304, 434
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	5 cut(s)	267, 291, 365, 401, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.