Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

1068338 .. 1069493

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGATTCAGCTCTCCTCATCTTCAGGGCTGTTTCCCATCCAAAAAATCGATTACAATAATAGATATTTTGATGTCTACGATAGTGATGGTTGTATGGCGAACCGTCTCCTTAATCTTACAATTTTTACTACATCCTCCAGCTTGCTCTTTTATCCAGTACCTTATAACTTGAGCAGTGAGAACTATAACAGTTGCACTGGATATTTCGGTGACGAGCTATCTCCCCATCTGTATTACCGGCTGTCTCCCTATTGCGCGCAATCTCCCTATTCAGATTACGCCCAATCTCCCTATTCAGATTCTGCCCAATCTCCCTATACAGATTCCGCGCAATCTCCCTATTCAGATTCCGCCCAATCTCCCTATCCATATTCTGCACAATCTCCCTATCCATATTCTGCACAATCTCCCTATCCAGATTCCACTCAGTATTTTCAAGAATTTGTATTATTAAATTGTTCCACAACACAAAATGTTAGCGGATGGGGAAACTACTACATCCCCGTCAGATGTCTCAGTGTCCCAGGGCACCATCAAGTTCTTGCTGTTGAATCCTCAATTTCTATAGATGACTTGCCGTTGCCGGTGTCAACTTGCACTACTTTGAAAAAAAAATTCTATCTTCCACTGACAAGTGTAGATGACGATGGTAACGACTGTGCACCGAACAACGTTTTATCACTCGAGTGGAAACCGTGGGTTTATTTCCCAGAATGTCATAACTGCAAAGGAGAGTGCTATATGGATTGCAGGAGCAATAGAATGGAGTGCTATCCTCATCCGGCTGTATATCCTGCATCTCCCTATAATCCCTATGATCAGTATGATCCCTATTATCAAGAACAAATGCCAAAGGGTATGCTGTCTAATCACATAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

293

Amino Acids

33.29

Weight (kDa)

4.51

Isoelectric Point (pI)

75.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	2 cut(s)	257, 329
AciI	CCGC	3 cut(s)	327, 351, 480
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	1 cut(s)	821
AcsI	RAATTY	2 cut(s)	440, 614
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	437, 551, 607
AjnI	CCWGG	1 cut(s)	523
AleI	CACNNNNGTG	1 cut(s)	685
AluBI	AGCT	4 cut(s)	10, 141, 217, 878
AluI	AGCT	4 cut(s)	10, 141, 217, 878
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	3 cut(s)	110, 249, 518
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	821
AlwNI	CAGNNNCTG	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	683
ApaLI	GTGCAC	1 cut(s)	660
ApoI	RAATTY	2 cut(s)	440, 614
AspLEI	GCGC	3 cut(s)	257, 259, 331
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	683
BaeGI	GKGCMC	2 cut(s)	531, 664
BanI	GGYRCC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	664
BccI	CCATC	6 cut(s)	44, 80, 234, 477, 540, 641
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	525
BclI	TGATCA	1 cut(s)	817
BcoDI	GTCTC	3 cut(s)	110, 249, 518
BfmI	CTRYAG	1 cut(s)	564
Bme1390I	CCNGG	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	683
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	806
BpmI	CTGGAG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	523, 524, 695
Bse118I	RCCGGY	2 cut(s)	237, 583
Bse1I	ACTGG	2 cut(s)	155, 202
BseBI	CCWGG	1 cut(s)	525
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	523, 524, 695
BseGI	GGATG	5 cut(s)	36, 131, 488, 498, 778
BseMII	CTCAG	2 cut(s)	440, 529
BseNI	ACTGG	2 cut(s)	155, 202
BsePI	GCGCGC	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	4
BseSI	GKGCMC	2 cut(s)	531, 664
BsgI	GTGCAG	2 cut(s)	360, 384
Bsh1236I	CGCG	2 cut(s)	257, 329
BshNI	GGYRCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	664
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	3 cut(s)	238, 584, 782
BslFI	GGGAC	1 cut(s)	506
BsmAI	GTCTC	3 cut(s)	110, 249, 518
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	506
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	531, 664
Bsp143I	GATC	2 cut(s)	817, 826
BspACI	CCGC	3 cut(s)	327, 351, 480
BspCNI	CTCAG	2 cut(s)	439, 528
BspDI	ATCGAT	1 cut(s)	48
BspFNI	CGCG	2 cut(s)	257, 329
BspLI	GGNNCC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	528
BsrFI	RCCGGY	2 cut(s)	237, 583
BsrI	ACTGG	2 cut(s)	155, 202
BssAI	RCCGGY	2 cut(s)	237, 583
BssECI	CCNNGG	3 cut(s)	523, 524, 695
BssHII	GCGCGC	1 cut(s)	255
BssMI	GATC	2 cut(s)	817, 826
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	4 cut(s)	104, 191, 659, 696
BstC8I	GCNNGC	2 cut(s)	143, 257
BstDEI	CTNAG	3 cut(s)	426, 515, 879
BstDSI	CCRYGG	1 cut(s)	695
BstF5I	GGATG	5 cut(s)	36, 131, 488, 498, 778
BstFNI	CGCG	2 cut(s)	257, 329
BstHHI	GCGC	3 cut(s)	257, 259, 331
BstKTI	GATC	2 cut(s)	820, 829
BstMAI	GTCTC	3 cut(s)	110, 249, 518
BstMBI	GATC	2 cut(s)	817, 826
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	2 cut(s)	531, 664
BstUI	CGCG	2 cut(s)	257, 329
Bsu15I	ATCGAT	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	5 cut(s)	36, 131, 488, 498, 778
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	4 cut(s)	181, 195, 523, 626
Cac8I	GCNNGC	2 cut(s)	143, 257
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	3 cut(s)	257, 259, 331
Cfr10I	RCCGGY	2 cut(s)	237, 583
ClaI	ATCGAT	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	158
CviJI	RGCY	7 cut(s)	10, 28, 141, 217, 241, 785, 878
CviKI_1	RGCY	7 cut(s)	10, 28, 141, 217, 241, 785, 878
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	3 cut(s)	426, 515, 879
DpnI	GATC	2 cut(s)	819, 828
DpnII	GATC	2 cut(s)	817, 826
EciI	GGCGGA	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	110
FaqI	GGGAC	1 cut(s)	506
FbaI	TGATCA	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	75
FokI	GGATG	5 cut(s)	23, 118, 485, 495, 765
GlaI	GCGC	3 cut(s)	256, 258, 330
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	3 cut(s)	238, 584, 782
HhaI	GCGC	3 cut(s)	257, 259, 331
Hin6I	GCGC	3 cut(s)	255, 257, 329
HinP1I	GCGC	3 cut(s)	255, 257, 329
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	6 cut(s)	4, 299, 323, 347, 419, 551
HpaII	CCGG	3 cut(s)	238, 584, 782
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	76, 591, 662
Hpy188I	TCNGA	4 cut(s)	274, 298, 346, 509
Hpy188III	TCNNGA	3 cut(s)	416, 437, 839
Hpy8I	GTNNAC	3 cut(s)	76, 591, 662
HpyCH4III	ACNGT	4 cut(s)	104, 191, 659, 696
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	8 cut(s)	195, 377, 401, 597, 662, 726, 750, 797
HpyF3I	CTNAG	3 cut(s)	426, 515, 879
HpySE526I	ACGT	1 cut(s)	672
HspAI	GCGC	3 cut(s)	255, 257, 329
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	2 cut(s)	817, 826
LmnI	GCTCC	1 cut(s)	753
LweI	GCATC	1 cut(s)	806
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	2 cut(s)	209, 650
MalI	GATC	2 cut(s)	819, 828
MboI	GATC	2 cut(s)	817, 826
MboII	GAAGA	2 cut(s)	12, 614
MhlI	GDGCHC	2 cut(s)	531, 664
MluCI	AATT	5 cut(s)	120, 440, 454, 558, 614
MnlI	CCTC	4 cut(s)	25, 145, 565, 786
MseI	TTAA	2 cut(s)	111, 452
MslI	CAYNNNNRTG	1 cut(s)	685
MspI	CCGG	3 cut(s)	238, 584, 782
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	2 cut(s)	257, 329
NdeII	GATC	2 cut(s)	817, 826
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	683
PasI	CCCWGGG	1 cut(s)	524
PauI	GCGCGC	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PfeI	GAWTC	6 cut(s)	4, 299, 323, 347, 419, 551
PsiI	TTATAA	1 cut(s)	165
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	530
PspXI	VCTCGAGB	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	302
PteI	GCGCGC	1 cut(s)	255
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	685
SaqAI	TTAA	2 cut(s)	111, 452
Sau3AI	GATC	2 cut(s)	817, 826
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	2 cut(s)	531, 664
SetI	ASST	6 cut(s)	12, 143, 163, 219, 675, 880
SfaNI	GCATC	1 cut(s)	806
SfcI	CTRYAG	1 cut(s)	564
Sfr274I	CTCGAG	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	685
SmlI	CTYRAG	2 cut(s)	169, 683
SmoI	CTYRAG	2 cut(s)	169, 683
Sse9I	AATT	5 cut(s)	120, 440, 454, 558, 614
SsiI	CCGC	3 cut(s)	327, 351, 480
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	4 cut(s)	104, 191, 659, 696
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	48, 684
TasI	AATT	5 cut(s)	120, 440, 454, 558, 614
TfiI	GAWTC	6 cut(s)	4, 299, 323, 347, 419, 551
Tru1I	TTAA	2 cut(s)	111, 452
Tru9I	TTAA	2 cut(s)	111, 452
TscAI	CASTG	4 cut(s)	181, 202, 523, 633
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspRI	CASTG	4 cut(s)	181, 202, 523, 633
VneI	GTGCAC	1 cut(s)	660
XapI	RAATTY	2 cut(s)	440, 614
XhoI	CTCGAG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.