Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004874.1

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Forward (+)

68587 .. 69510

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004874.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgacaaatggattcagaaagaagttgggtgaaggaggttttggaagtgttttcattggaaagcttccaagtaatggagttccggtagccataaaagtcctcaaggattctaaaggaaatggagatgattttgttaatgaagtgggaaccattggtaggattcaccacattaacgtggttcgccttcttgggttttctgctgaaggaggcaagcgtgctcttatttatgaagacatgccaaacagctctctggagaagtttatcacatctaaagatcgatctagtcataacactgcttcatttgattggatgaaacttcgcaacatcatcacaggtatagcaaagggaatcgagtatctacaccaagggtgcgaccaaaggatcctccactttgatatcaagcctcataatatcttgctagaccatgactttaatcccaagatctctgattttggtctggccaaactctgttccaaggaagacagtcttatatctatgactgctgctagaggcaccataggctacatagcacctgaagtgtttaatggaaactttggtaccgtctcctacaagtcagatgtgtatagttttgggatgctagtgcttgaagttattggagctaggaaggaatccgctcttacatcggccagcagtgacgtgtattttcctgaattgatttacaagtgtctcgttcaaggagaagagttggatttggagctaggtggtgacggagatgctcaaattgctaagagacttgcaaatattgcactttggtgcatccagtggtaccctgtgaatcgcccatccatgaaagcagttgttagaatgctagaaggaccctctgaaagcttgatcatgccacccaatccatttgcttcaacaactcacacggaaccaacacagcaacaccatctagctgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

307

Amino Acids

33.76

Weight (kDa)

6.37

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	557, 786
AccB1I	GGYRCC	3 cut(s)	512, 557, 786
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	635
AciI	CCGC	1 cut(s)	633
AclWI	GGATC	2 cut(s)	376, 389
AcoI	YGGCCR	2 cut(s)	459, 645
AcuI	CTGAAG	2 cut(s)	222, 555
AfaI	GTAC	2 cut(s)	559, 788
AfiI	CCNNNNNNNGG	2 cut(s)	74, 156
AflIII	ACRYGT	1 cut(s)	657
AgsI	TTSAA	3 cut(s)	608, 695, 879
AjiI	CACGTC	1 cut(s)	658
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AleI	CACNNNNGTG	1 cut(s)	772
AluBI	AGCT	6 cut(s)	64, 246, 620, 718, 849, 917
AluI	AGCT	6 cut(s)	64, 246, 620, 718, 849, 917
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	3 cut(s)	568, 692, 745
AlwI	GGATC	2 cut(s)	376, 389
AoxI	GGCC	2 cut(s)	459, 645
ApeKI	GCWGC	1 cut(s)	503
Asp718I	GGTACC	2 cut(s)	557, 786
AspS9I	GGNCC	1 cut(s)	836
AsuHPI	GGTGA	3 cut(s)	41, 155, 737
AvaII	GGWCC	1 cut(s)	836
BaeI	ACNNNNGTAYC	2 cut(s)	541, 574
BalI	TGGCCA	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	381
BanI	GGYRCC	3 cut(s)	512, 557, 786
BbsI	GAAGAC	2 cut(s)	237, 486
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	2 cut(s)	811, 918
BclI	TGATCA	1 cut(s)	852
BcoDI	GTCTC	3 cut(s)	568, 692, 745
BfaI	CTAG	9 cut(s)	282, 419, 507, 599, 621, 719, 830, 914, 922
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme18I	GGWCC	1 cut(s)	836
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	836
BmiI	GGNNCC	7 cut(s)	148, 383, 514, 559, 788, 838, 894
BmsI	GCATC	3 cut(s)	585, 724, 786
BpiI	GAAGAC	2 cut(s)	237, 486
BpmI	CTGGAG	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	364, 474
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 156
Bse1I	ACTGG	1 cut(s)	781
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	364, 474
BseGI	GGATG	4 cut(s)	315, 600, 777, 803
BseLI	CCNNNNNNNGG	2 cut(s)	74, 156
BseNI	ACTGG	1 cut(s)	781
BseXI	GCAGC	1 cut(s)	490
BshFI	GGCC	2 cut(s)	461, 647
BshNI	GGYRCC	3 cut(s)	512, 557, 786
BshVI	ATCGAT	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	74, 156
BsmAI	GTCTC	3 cut(s)	568, 692, 745
BsmBI	CGTCTC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	831
BsnI	GGCC	2 cut(s)	461, 647
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	5 cut(s)	274, 278, 381, 441, 852
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	2 cut(s)	461, 647
BspDI	ATCGAT	1 cut(s)	277
BspLI	GGNNCC	7 cut(s)	148, 383, 514, 559, 788, 838, 894
BspPI	GGATC	2 cut(s)	376, 389
BspT107I	GGYRCC	3 cut(s)	512, 557, 786
BsrBI	CCGCTC	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	2 cut(s)	364, 474
BssMI	GATC	5 cut(s)	274, 278, 381, 441, 852
BssT1I	CCWWGG	2 cut(s)	364, 474
Bst4CI	ACNGT	2 cut(s)	485, 562
Bst6I	CTCTTC	1 cut(s)	696
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	3 cut(s)	212, 216, 649
BstDEI	CTNAG	1 cut(s)	747
BstF5I	GGATG	4 cut(s)	315, 600, 777, 803
BstKTI	GATC	5 cut(s)	277, 281, 384, 444, 855
BstMAI	GTCTC	3 cut(s)	568, 692, 745
BstMBI	GATC	5 cut(s)	274, 278, 381, 441, 852
BstMWI	GCNNNNNNNGC	3 cut(s)	519, 743, 764
BstNSI	RCATGY	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	2 cut(s)	237, 486
BstX2I	RGATCY	2 cut(s)	381, 441
BstYI	RGATCY	2 cut(s)	381, 441
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	461, 647
BsuTUI	ATCGAT	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	4 cut(s)	315, 600, 777, 803
BtsI	GCAGTG	2 cut(s)	291, 658
BtsIMutI	CAGTG	3 cut(s)	291, 658, 788
Cac8I	GCNNGC	3 cut(s)	212, 216, 649
Cfr13I	GGNCC	1 cut(s)	836
ClaI	ATCGAT	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	558, 787
CviAII	CATG	4 cut(s)	235, 425, 808, 856
CviQI	GTAC	2 cut(s)	558, 787
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	5 cut(s)	276, 280, 383, 443, 854
DpnII	GATC	5 cut(s)	274, 278, 381, 441, 852
EaeI	YGGCCR	2 cut(s)	459, 645
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	2 cut(s)	364, 474
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	2 cut(s)	222, 555
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	364, 474
ErhI	CCWWGG	2 cut(s)	364, 474
Esp3I	CGTCTC	1 cut(s)	568
FaeI	CATG	4 cut(s)	238, 428, 811, 859
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	4 cut(s)	234, 424, 807, 855
FbaI	TGATCA	1 cut(s)	852
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	4 cut(s)	322, 607, 764, 790
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	9 cut(s)	282, 419, 507, 599, 621, 719, 830, 914, 922
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	461, 647
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	4 cut(s)	238, 428, 811, 859
HindIII	AAGCTT	2 cut(s)	62, 847
HinfI	GANTC	6 cut(s)	12, 107, 160, 348, 629, 796
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	3 cut(s)	41, 155, 737
Hpy188I	TCNGA	4 cut(s)	17, 448, 577, 844
Hpy188III	TCNNGA	2 cut(s)	251, 668
HpyAV	CCTTC	5 cut(s)	26, 194, 197, 619, 827
HpyCH4III	ACNGT	2 cut(s)	485, 562
HpyCH4IV	ACGT	2 cut(s)	174, 657
HpyCH4V	TGCA	3 cut(s)	758, 767, 777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	519, 743, 764
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	2 cut(s)	174, 657
Hsp92II	CATG	4 cut(s)	238, 428, 811, 859
KpnI	GGTACC	2 cut(s)	561, 790
Ksp22I	TGATCA	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	274, 278, 381, 441, 852
LmnI	GCTCC	2 cut(s)	617, 715
LpnPI	CCDG	9 cut(s)	96, 236, 318, 443, 546, 661, 681, 794, 804
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	3 cut(s)	585, 724, 786
MaeI	CTAG	9 cut(s)	282, 419, 507, 599, 621, 719, 830, 914, 922
MaeII	ACGT	2 cut(s)	174, 657
MaeIII	GTNAC	2 cut(s)	653, 725
MalI	GATC	5 cut(s)	276, 280, 383, 443, 854
MbiI	CCGCTC	1 cut(s)	635
MboI	GATC	5 cut(s)	274, 278, 381, 441, 852
MboII	GAAGA	3 cut(s)	242, 491, 713
MflI	RGATCY	2 cut(s)	381, 441
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	2 cut(s)	671, 741
MluNI	TGGCCA	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	7 cut(s)	29, 110, 200, 395, 414, 503, 850
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	4 cut(s)	135, 171, 432, 543
MslI	CAYNNNNRTG	2 cut(s)	173, 772
Msp20I	TGGCCA	1 cut(s)	461
MspI	CCGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	831
MwoI	GCNNNNNNNGC	3 cut(s)	519, 743, 764
NdeII	GATC	5 cut(s)	274, 278, 381, 441, 852
NlaIII	CATG	4 cut(s)	238, 428, 811, 859
NlaIV	GGNNCC	7 cut(s)	148, 383, 514, 559, 788, 838, 894
NmuCI	GTSAC	2 cut(s)	653, 725
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	772
PctI	GAATGC	1 cut(s)	831
PfeI	GAWTC	6 cut(s)	12, 107, 160, 348, 629, 796
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	505
PpuMI	RGGWCCY	1 cut(s)	836
Psp5II	RGGWCCY	1 cut(s)	836
PspN4I	GGNNCC	7 cut(s)	148, 383, 514, 559, 788, 838, 894
PspPI	GGNCC	1 cut(s)	836
PspPPI	RGGWCCY	1 cut(s)	836
PsuI	RGATCY	2 cut(s)	381, 441
RsaI	GTAC	2 cut(s)	559, 788
RsaNI	GTAC	2 cut(s)	558, 787
RseI	CAYNNNNRTG	2 cut(s)	173, 772
SaqAI	TTAA	4 cut(s)	135, 171, 432, 543
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	5 cut(s)	274, 278, 381, 441, 852
Sau96I	GGNCC	1 cut(s)	836
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	3 cut(s)	585, 724, 786
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	2 cut(s)	173, 772
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	671, 741
SsiI	CCGC	1 cut(s)	633
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	9 cut(s)	282, 419, 507, 599, 621, 719, 830, 914, 922
StyI	CCWWGG	2 cut(s)	364, 474
TaaI	ACNGT	2 cut(s)	485, 562
TaiI	ACGT	2 cut(s)	177, 660
TaqI	TCGA	2 cut(s)	277, 351
TasI	AATT	2 cut(s)	671, 741
TfiI	GAWTC	6 cut(s)	12, 107, 160, 348, 629, 796
Tru1I	TTAA	4 cut(s)	135, 171, 432, 543
Tru9I	TTAA	4 cut(s)	135, 171, 432, 543
TscAI	CASTG	3 cut(s)	298, 658, 788
TseFI	GTSAC	2 cut(s)	653, 725
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	2 cut(s)	653, 725
TspDTI	ATGAA	6 cut(s)	43, 153, 243, 288, 326, 824
TspGWI	ACGGA	2 cut(s)	744, 905
TspRI	CASTG	3 cut(s)	298, 658, 788
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	836
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	9 cut(s)	282, 419, 507, 599, 621, 719, 830, 914, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.