Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000423.1

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

9081 .. 9761

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000423.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgccaaacaggtccctagagaagttcatcaaatctagaggatcaaataatagcagcagttcatttaactgggagaaactttgcaacatcatcacaggtatagcaaagggaatcgagtaccttcaccaagggtgtgaccagaggattctccactttgatatcaagcctcacaatatcttgttagaccatgcctttaatccaaaaatttctgattttggtctggctaaactctgttccaaggaagatagttttatatctatgactgctgccagaggcactataggctacattgcacctgaagtatttaatggcaactttggaactgtcacctacaaatctgatgtgtttagtttcgggatgctggtgcttgaagttattggagccaggaaggaaactgctgttacatctagcgacaatgaggtgtattttcctgaattgatttacaagtgtctgatccagggagaagagttggatttggagctagctgatgatggagatgcgcagattgctaagagattagcaattgtggcactttggtgcatccagtggtacccggtgaatcgcccttccatgaaagcagttgtaagaatgctggaaggaccctctgaaagcttgatcatgccacccaatccgtttgcttccacaactcagatggaaccaacaacaaccccatcaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

226

Amino Acids

25.12

Weight (kDa)

5.42

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	501
Acc65I	GGTACC	1 cut(s)	549
AccB1I	GGYRCC	1 cut(s)	549
AclWI	GGATC	2 cut(s)	49, 448
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	119, 551
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	383, 456
AleI	CACNNNNGTG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	481, 485, 612
AluI	AGCT	3 cut(s)	481, 485, 612
AlwI	GGATC	2 cut(s)	49, 448
ApeKI	GCWGC	2 cut(s)	54, 266
ApoI	RAATTY	1 cut(s)	204
Asp718I	GGTACC	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	12, 599
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	3 cut(s)	116, 319, 568
AsuNHI	GCTAGC	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	12, 599
BanI	GGYRCC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	66, 253
BccI	CCATC	3 cut(s)	485, 646, 679
BciT130I	CCWGG	2 cut(s)	385, 458
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	554
BfaI	CTAG	4 cut(s)	17, 36, 408, 482
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	2 cut(s)	55, 267
BlsI	GCNGC	2 cut(s)	56, 268
Bme1390I	CCNGG	3 cut(s)	385, 458, 554
Bme18I	GGWCC	2 cut(s)	12, 599
BmgT120I	GGNCC	2 cut(s)	12, 599
BmiI	GGNNCC	5 cut(s)	14, 382, 551, 601, 657
BmrFI	CCNGG	3 cut(s)	385, 458, 554
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	348, 487, 549
BmtI	GCTAGC	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	127, 237, 457
Bse1I	ACTGG	2 cut(s)	74, 544
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	385, 458
BseDI	CCNNGG	3 cut(s)	127, 237, 457
BseGI	GGATG	2 cut(s)	363, 540
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	2 cut(s)	74, 544
BseXI	GCAGC	2 cut(s)	66, 253
BshNI	GGYRCC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	594
Bsp143I	GATC	3 cut(s)	41, 453, 615
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	5 cut(s)	14, 382, 551, 601, 657
BspOI	GCTAGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	49, 448
BspT107I	GGYRCC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	74, 544
BssECI	CCNNGG	3 cut(s)	127, 237, 457
BssMI	GATC	3 cut(s)	41, 453, 615
BssT1I	CCWWGG	2 cut(s)	127, 237
Bst2UI	CCWGG	2 cut(s)	385, 458
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	510, 648
BstF5I	GGATG	2 cut(s)	363, 540
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	44, 456, 618
BstMBI	GATC	3 cut(s)	41, 453, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	282, 506, 527
BstNI	CCWGG	2 cut(s)	385, 458
BstSCI	CCNGG	3 cut(s)	383, 456, 552
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	66, 253
BtsCI	GGATG	2 cut(s)	363, 540
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	483
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	12, 599
Csp6I	GTAC	2 cut(s)	118, 550
CviAII	CATG	3 cut(s)	188, 571, 619
CviJI	RGCY	7 cut(s)	166, 224, 285, 383, 481, 485, 612
CviKI_1	RGCY	7 cut(s)	166, 224, 285, 383, 481, 485, 612
CviQI	GTAC	2 cut(s)	118, 550
DdeI	CTNAG	2 cut(s)	510, 648
DpnI	GATC	3 cut(s)	43, 455, 617
DpnII	GATC	3 cut(s)	41, 453, 615
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	127, 237
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	12, 599
Eco57I	CTGAAG	1 cut(s)	318
EcoO109I	RGGNCCY	2 cut(s)	12, 599
EcoRII	CCWGG	2 cut(s)	383, 456
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	127, 237
ErhI	CCWWGG	2 cut(s)	127, 237
FaeI	CATG	3 cut(s)	191, 574, 622
FaiI	YATR	7 cut(s)	101, 189, 254, 260, 281, 572, 620
FatI	CATG	3 cut(s)	187, 570, 618
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	2 cut(s)	55, 267
FokI	GGATG	2 cut(s)	370, 527
Fsp4HI	GCNGC	2 cut(s)	55, 267
FspBI	CTAG	4 cut(s)	17, 36, 408, 482
FspI	TGCGCA	1 cut(s)	501
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	2 cut(s)	55, 267
HapII	CCGG	1 cut(s)	554
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	191, 574, 622
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	3 cut(s)	111, 145, 559
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	3 cut(s)	116, 319, 568
Hpy188I	TCNGA	5 cut(s)	211, 340, 453, 607, 651
Hpy188III	TCNNGA	3 cut(s)	36, 355, 431
HpyAV	CCTTC	4 cut(s)	131, 382, 576, 590
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	84, 293, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	282, 506, 527
HpyF3I	CTNAG	2 cut(s)	510, 648
Hsp92II	CATG	3 cut(s)	191, 574, 622
HspAI	GCGC	1 cut(s)	500
KpnI	GGTACC	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	3 cut(s)	41, 453, 615
LmnI	GCTCC	2 cut(s)	380, 478
Lsp1109I	GCAGC	2 cut(s)	66, 253
LweI	GCATC	3 cut(s)	348, 487, 549
MaeI	CTAG	4 cut(s)	17, 36, 408, 482
MaeIII	GTNAC	3 cut(s)	134, 325, 400
MalI	GATC	3 cut(s)	43, 455, 617
MboI	GATC	3 cut(s)	41, 453, 615
MboII	GAAGA	2 cut(s)	254, 476
MfeI	CAATTG	1 cut(s)	522
MluCI	AATT	3 cut(s)	204, 434, 522
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	6 cut(s)	32, 135, 177, 266, 412, 613
MseI	TTAA	4 cut(s)	66, 195, 306, 679
MslI	CAYNNNNRTG	1 cut(s)	535
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	3 cut(s)	385, 458, 554
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	594
MvaI	CCWGG	2 cut(s)	385, 458
MwoI	GCNNNNNNNGC	3 cut(s)	282, 506, 527
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	3 cut(s)	41, 453, 615
NheI	GCTAGC	1 cut(s)	481
NlaIII	CATG	3 cut(s)	191, 574, 622
NlaIV	GGNNCC	5 cut(s)	14, 382, 551, 601, 657
NmuCI	GTSAC	2 cut(s)	134, 325
NsbI	TGCGCA	1 cut(s)	501
OliI	CACNNNNGTG	1 cut(s)	535
PctI	GAATGC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	111, 145, 559
PkrI	GCNGC	2 cut(s)	56, 268
PpuMI	RGGWCCY	2 cut(s)	12, 599
Psp5II	RGGWCCY	2 cut(s)	12, 599
Psp6I	CCWGG	2 cut(s)	383, 456
PspGI	CCWGG	2 cut(s)	383, 456
PspN4I	GGNNCC	5 cut(s)	14, 382, 551, 601, 657
PspPI	GGNCC	2 cut(s)	12, 599
PspPPI	RGGWCCY	2 cut(s)	12, 599
RsaI	GTAC	2 cut(s)	119, 551
RsaNI	GTAC	2 cut(s)	118, 550
RseI	CAYNNNNRTG	1 cut(s)	535
SaqAI	TTAA	4 cut(s)	66, 195, 306, 679
SatI	GCNGC	2 cut(s)	55, 267
Sau3AI	GATC	3 cut(s)	41, 453, 615
Sau96I	GGNCC	2 cut(s)	12, 599
ScrFI	CCNGG	3 cut(s)	385, 458, 554
SetI	ASST	9 cut(s)	14, 100, 123, 298, 332, 423, 483, 487, 614
SfaNI	GCATC	3 cut(s)	348, 487, 549
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	2 cut(s)	12, 599
SmiMI	CAYNNNNRTG	1 cut(s)	535
Sse9I	AATT	3 cut(s)	204, 434, 522
SspMI	CTAG	4 cut(s)	17, 36, 408, 482
StyD4I	CCNGG	3 cut(s)	383, 456, 552
StyI	CCWWGG	2 cut(s)	127, 237
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	204, 434, 522
TfiI	GAWTC	3 cut(s)	111, 145, 559
Tru1I	TTAA	4 cut(s)	66, 195, 306, 679
Tru9I	TTAA	4 cut(s)	66, 195, 306, 679
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	2 cut(s)	134, 325
TseI	GCWGC	2 cut(s)	54, 266
Tsp45I	GTSAC	2 cut(s)	134, 325
TspDTI	ATGAA	3 cut(s)	16, 51, 587
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	12, 599
XapI	RAATTY	1 cut(s)	204
XbaI	TCTAGA	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XspI	CTAG	4 cut(s)	17, 36, 408, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.