Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

833457 .. 834451

Gene Structure 995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01501.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCAACTTTCAATGAACATCCTGCCTCTGCTTTTCTTGCTTGTAATTGTGTTCCCCATTATTGTTAAACCCATTAGCAAAGCATCCGATGATCACTGCCCGGTTCAAAGGTGTAGGCATGATGGTCCGCTTATCCAGTTTCCATTCCGTCTACAACATTATCCCTCTCACTGTGGCCATCCACAGTTTGAGGTTTCCTGCAGCAGCTTCAGCAACATGACCATGATGAAGCTCTCCTCATCATCAGGATTCTTTCTAATACAAACAATCGATTATGAGACACAACAGTTTCGTGTGTATGATCAGGATGGTTGCCTTCCGAGACGCCTTCTTAATTTCACCCTCTCCTTCTCACTCTTTCAACCAGCACATTTGATTTACAGGGAGGAACCAACACCTTACATGGTTTACTTCAATTGCTTTAGAAATTACGATTACAATGGCGATTTGAGGAACTTGACGTTATTAAATTGTACCACGGTACAAAATCTTAGCGCATCCAACACACCTGAGATCTCCTCCTGGAGGTACATGGCGATCAAATGTCTCAGTGTCCCAGGGAAGTATCAAGTTCTGGCTACTACCAAGTATTTTACCATGTCTGACATGCCTGGTGCTTGCTATACTTTGTCACAACTCTTTCTTCCAGTGCGGAGTATACAAGATTCTATGTTTAGGTGTGAAGCAGAGACTGGTTTATTGCTGGAATGGAAAGAACGGAATTTCCCAGAATGTCAACAGTGTAGAGGAAACTGCTATTTCAATTACAGCAATCAAGTGTTGAAGTGTTACCCTCCCATGAGTCCCATCTCCAGAGAAAAAACCAAAGGTACGTATAGTGACAATTCCAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

286

Amino Acids

33.11

Weight (kDa)

8.48

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	33 - 101	3.7e-15	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	151, 658
AciI	CCGC	2 cut(s)	128, 652
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	4 cut(s)	475, 483, 530, 832
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	6 cut(s)	12, 107, 362, 415, 763, 784
AjnI	CCWGG	4 cut(s)	521, 556, 610, 848
AloI	GAACNNNNNNTCC	2 cut(s)	708, 740
AluBI	AGCT	2 cut(s)	207, 232
AluI	AGCT	2 cut(s)	207, 232
Alw26I	GTCTC	4 cut(s)	272, 316, 551, 683
AlwNI	CAGNNNCTG	1 cut(s)	692
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	201, 204
ApoI	RAATTY	1 cut(s)	721
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	213, 216
BccI	CCATC	4 cut(s)	116, 186, 302, 815
BciT130I	CCWGG	4 cut(s)	523, 558, 612, 850
BclI	TGATCA	2 cut(s)	91, 301
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	4 cut(s)	272, 316, 551, 683
BfmI	CTRYAG	1 cut(s)	199
BglII	AGATCT	1 cut(s)	513
BisI	GCNGC	2 cut(s)	202, 205
BlsI	GCNGC	2 cut(s)	203, 206
Bme1390I	CCNGG	5 cut(s)	101, 523, 558, 612, 850
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	5 cut(s)	101, 523, 558, 612, 850
BmsI	GCATC	2 cut(s)	92, 506
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	2 cut(s)	544, 796
BpuMI	CCSGG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	3 cut(s)	477, 556, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	3 cut(s)	136, 647, 697
BseBI	CCWGG	4 cut(s)	523, 558, 612, 850
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	477, 556, 557
BseGI	GGATG	5 cut(s)	18, 83, 178, 313, 497
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	501, 562
BseNI	ACTGG	3 cut(s)	136, 647, 697
BseRI	GAGGAG	2 cut(s)	226, 508
BseXI	GCAGC	2 cut(s)	213, 216
BshFI	GGCC	1 cut(s)	177
BshVI	ATCGAT	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	2 cut(s)	539, 789
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	4 cut(s)	272, 316, 551, 683
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	539, 789
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	91, 301, 513, 537
BspACI	CCGC	2 cut(s)	128, 652
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	502, 561
BspDI	ATCGAT	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	390
BspMAI	CTGCAG	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	136, 647, 697
BssECI	CCNNGG	3 cut(s)	477, 556, 557
BssMI	GATC	4 cut(s)	91, 301, 513, 537
BssNAI	GTATAC	1 cut(s)	659
BssNI	GRCGYC	1 cut(s)	325
Bst1107I	GTATAC	1 cut(s)	659
Bst2UI	CCWGG	4 cut(s)	523, 558, 612, 850
Bst4CI	ACNGT	5 cut(s)	173, 186, 288, 481, 741
BstACI	GRCGYC	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	834
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	3 cut(s)	491, 510, 548
BstDSI	CCRYGG	1 cut(s)	477
BstENI	CCTNNNNNAGG	1 cut(s)	523
BstF5I	GGATG	5 cut(s)	18, 83, 178, 313, 497
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	4 cut(s)	94, 304, 516, 540
BstMAI	GTCTC	4 cut(s)	272, 316, 551, 683
BstMBI	GATC	4 cut(s)	91, 301, 513, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 210
BstNI	CCWGG	4 cut(s)	523, 558, 612, 850
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	5 cut(s)	99, 521, 556, 610, 848
BstSFI	CTRYAG	1 cut(s)	199
BstSNI	TACGTA	1 cut(s)	834
BstV1I	GCAGC	2 cut(s)	213, 216
BstX2I	RGATCY	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	513
BstZ17I	GTATAC	1 cut(s)	659
Bsu15I	ATCGAT	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	5 cut(s)	18, 83, 178, 313, 497
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	5 cut(s)	94, 169, 556, 654, 746
Cac8I	GCNNGC	1 cut(s)	619
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	1 cut(s)	125
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	474, 482, 529, 831
CviAII	CATG	8 cut(s)	119, 217, 223, 403, 532, 598, 607, 799
CviJI	RGCY	4 cut(s)	177, 207, 232, 578
CviKI_1	RGCY	4 cut(s)	177, 207, 232, 578
CviQI	GTAC	4 cut(s)	474, 482, 529, 831
DdeI	CTNAG	3 cut(s)	491, 510, 548
DpnI	GATC	4 cut(s)	93, 303, 515, 539
DpnII	GATC	4 cut(s)	91, 301, 513, 537
EaeI	YGGCCR	1 cut(s)	175
Eco105I	TACGTA	1 cut(s)	834
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	523
EcoRII	CCWGG	4 cut(s)	521, 556, 610, 848
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	8 cut(s)	122, 220, 226, 406, 535, 601, 610, 802
FaqI	GGGAC	2 cut(s)	539, 789
FatI	CATG	8 cut(s)	118, 216, 222, 402, 531, 597, 606, 798
FbaI	TGATCA	2 cut(s)	91, 301
FblI	GTMKAC	2 cut(s)	151, 658
Fnu4HI	GCNGC	2 cut(s)	202, 205
FokI	GGATG	5 cut(s)	5, 70, 165, 320, 484
Fsp4HI	GCNGC	2 cut(s)	202, 205
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	2 cut(s)	202, 205
GsuI	CTGGAG	2 cut(s)	544, 796
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	497
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	8 cut(s)	122, 220, 226, 406, 535, 601, 610, 802
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HinfI	GANTC	3 cut(s)	249, 665, 802
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	4 cut(s)	152, 409, 659, 737
Hpy188I	TCNGA	3 cut(s)	88, 321, 604
Hpy188III	TCNNGA	3 cut(s)	246, 305, 813
Hpy8I	GTNNAC	4 cut(s)	152, 409, 659, 737
HpyAV	CCTTC	3 cut(s)	326, 338, 358
HpyCH4III	ACNGT	5 cut(s)	173, 186, 288, 481, 741
HpyCH4IV	ACGT	2 cut(s)	461, 833
HpyCH4V	TGCA	2 cut(s)	4, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 210
HpyF3I	CTNAG	3 cut(s)	491, 510, 548
HpySE526I	ACGT	2 cut(s)	461, 833
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	8 cut(s)	122, 220, 226, 406, 535, 601, 610, 802
HspAI	GCGC	1 cut(s)	495
Ksp22I	TGATCA	2 cut(s)	91, 301
Kzo9I	GATC	4 cut(s)	91, 301, 513, 537
Lsp1109I	GCAGC	2 cut(s)	213, 216
LweI	GCATC	2 cut(s)	92, 506
MaeII	ACGT	2 cut(s)	461, 833
MaeIII	GTNAC	3 cut(s)	630, 788, 839
MalI	GATC	4 cut(s)	93, 303, 515, 539
MboI	GATC	4 cut(s)	91, 301, 513, 537
MboII	GAAGA	1 cut(s)	635
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	8 cut(s)	45, 334, 415, 427, 469, 721, 763, 844
MluNI	TGGCCA	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	811
MmeI	TCCRAC	1 cut(s)	525
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	3 cut(s)	66, 333, 467
MslI	CAYNNNNRTG	1 cut(s)	221
Msp20I	TGGCCA	1 cut(s)	177
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	5 cut(s)	101, 523, 558, 612, 850
MunI	CAATTG	1 cut(s)	415
MvaI	CCWGG	4 cut(s)	523, 558, 612, 850
MwoI	GCNNNNNNNGC	2 cut(s)	37, 210
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	4 cut(s)	91, 301, 513, 537
NlaIII	CATG	8 cut(s)	122, 220, 226, 406, 535, 601, 610, 802
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	2 cut(s)	630, 839
NspI	RCATGY	1 cut(s)	610
PasI	CCCWGGG	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	249, 665
PfoI	TCCNGGA	2 cut(s)	521, 848
PkrI	GCNGC	2 cut(s)	203, 206
PleI	GAGTC	1 cut(s)	810
PpsI	GAGTC	1 cut(s)	810
Ppu21I	YACGTR	1 cut(s)	834
Psp6I	CCWGG	4 cut(s)	521, 556, 610, 848
PspGI	CCWGG	4 cut(s)	521, 556, 610, 848
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	4 cut(s)	475, 483, 530, 832
RsaNI	GTAC	4 cut(s)	474, 482, 529, 831
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	66, 333, 467
SatI	GCNGC	2 cut(s)	202, 205
Sau3AI	GATC	4 cut(s)	91, 301, 513, 537
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	811
ScrFI	CCNGG	5 cut(s)	101, 523, 558, 612, 850
SfaNI	GCATC	2 cut(s)	92, 506
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	221
SnaBI	TACGTA	1 cut(s)	834
Sse9I	AATT	8 cut(s)	45, 334, 415, 427, 469, 721, 763, 844
SsiI	CCGC	2 cut(s)	128, 652
StyD4I	CCNGG	5 cut(s)	99, 521, 556, 610, 848
TaaI	ACNGT	5 cut(s)	173, 186, 288, 481, 741
TaiI	ACGT	2 cut(s)	464, 836
TaqI	TCGA	1 cut(s)	270
TasI	AATT	8 cut(s)	45, 334, 415, 427, 469, 721, 763, 844
TfiI	GAWTC	2 cut(s)	249, 665
Tru1I	TTAA	3 cut(s)	66, 333, 467
Tru9I	TTAA	3 cut(s)	66, 333, 467
TscAI	CASTG	5 cut(s)	101, 176, 556, 654, 746
TseFI	GTSAC	2 cut(s)	630, 839
TseI	GCWGC	2 cut(s)	201, 204
Tsp45I	GTSAC	2 cut(s)	630, 839
TspDTI	ATGAA	2 cut(s)	29, 242
TspGWI	ACGGA	2 cut(s)	137, 733
TspRI	CASTG	5 cut(s)	101, 176, 556, 654, 746
VpaK11BI	GGWCC	1 cut(s)	125
XagI	CCTNNNNNAGG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	721
XceI	RCATGY	1 cut(s)	610
XmiI	GTMKAC	2 cut(s)	151, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.