Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004874.1

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Forward (+)

62495 .. 63370

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004874.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgattcagctctcctcatcttcagggctgtttcccatccaaaaaatcgattacaataatagatattttgatgtctacgatagtgatggttgtatggcgagccgcctccttaatcttacaatttttactacatcctccagcttgctcttttatccagtaccttataacttgagcagtgagaactataactgttgcactggaaatttcggtgacgagctatctccccatctgtattcccagctgtcttcctattgcccgcaatctccctattcagattacgcccaatctccctattcagattctgcccaatctccctattcagattccgcgcaatctccctattcagattccgcccaatctccctatccagattctacacaatctccctatccagattccattcagtattgtcaagaatttgtattattaaattgttccacaacacaaaatgttagcggatggggaaaccactacatccccgtcagatgtctcagtgtcccagggcaccatcaagttcttgctgttgaatcctcaatttctatagatgacttgccgttgccggtgtcaacttgcactactttgaaaaaaaaattctatcttccactgagaagggtagatgacgatggtaacgactgtgcaccgaacaacgttttatcactcgagtggaaaccatgggtttatttcccagaatgtcataactgcaaaggagagtgctatatggattgcaggagcaatcgaatggagtgcaatcctcatccggctgtatatcctgcatctccctatattccctattatcagtatcatccctattatcagtatcatccctatcataaaaaacaaatgccaaagggtatgctgtctaatcacatagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

291

Amino Acids

33.13

Weight (kDa)

5.33

Isoelectric Point (pI)

76.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	329
AciI	CCGC	5 cut(s)	103, 257, 327, 351, 456
AclI	AACGTT	1 cut(s)	648
AcsI	RAATTY	3 cut(s)	202, 416, 590
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	527, 583
AjnI	CCWGG	1 cut(s)	499
AleI	CACNNNNGTG	1 cut(s)	661
AluBI	AGCT	5 cut(s)	10, 141, 217, 241, 872
AluI	AGCT	5 cut(s)	10, 141, 217, 241, 872
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	494
Alw44I	GTGCAC	1 cut(s)	636
AlwNI	CAGNNNCTG	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	659
ApaLI	GTGCAC	1 cut(s)	636
ApoI	RAATTY	3 cut(s)	202, 416, 590
AspLEI	GCGC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	659
BaeGI	GKGCMC	2 cut(s)	507, 640
BanI	GGYRCC	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	640
BccI	CCATC	6 cut(s)	44, 80, 234, 453, 516, 617
BceAI	ACGGC	1 cut(s)	538
BcgI	CGANNNNNNTGC	2 cut(s)	726, 760
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	540
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	501
BmeT110I	CYCGRG	1 cut(s)	659
BmiI	GGNNCC	1 cut(s)	506
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	782
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	499, 500, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	2 cut(s)	155, 202
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	499, 500, 671
BseGI	GGATG	7 cut(s)	36, 131, 464, 474, 754, 802, 820
BseMII	CTCAG	2 cut(s)	505, 596
BseNI	ACTGG	2 cut(s)	155, 202
BseRI	GAGGAG	1 cut(s)	4
BseSI	GKGCMC	2 cut(s)	507, 640
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	504
BshVI	ATCGAT	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	640
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	560, 758
BslFI	GGGAC	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	507, 640
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	5 cut(s)	103, 257, 327, 351, 456
BspCNI	CTCAG	2 cut(s)	504, 597
BspDI	ATCGAT	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	155, 202
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	499, 500, 671
BssT1I	CCWWGG	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	191, 635
BstC8I	GCNNGC	3 cut(s)	100, 143, 257
BstDEI	CTNAG	3 cut(s)	491, 605, 873
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	7 cut(s)	36, 131, 464, 474, 754, 802, 820
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	494
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	2 cut(s)	507, 640
BstUI	CGCG	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	671
BtsCI	GGATG	7 cut(s)	36, 131, 464, 474, 754, 802, 820
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	4 cut(s)	181, 195, 499, 602
Cac8I	GCNNGC	3 cut(s)	100, 143, 257
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	1 cut(s)	672
CviJI	RGCY	8 cut(s)	10, 28, 102, 141, 217, 241, 761, 872
CviKI_1	RGCY	8 cut(s)	10, 28, 102, 141, 217, 241, 761, 872
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	3 cut(s)	491, 605, 873
EciI	GGCGGA	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	1 cut(s)	675
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	671
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	7 cut(s)	23, 118, 461, 471, 741, 789, 807
Fsp4HI	GCNGC	1 cut(s)	103
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	103
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	2 cut(s)	560, 758
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	675
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	7 cut(s)	4, 299, 323, 347, 371, 395, 527
HpaII	CCGG	2 cut(s)	560, 758
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	76, 567, 638
Hpy188I	TCNGA	5 cut(s)	274, 298, 322, 346, 485
Hpy188III	TCNNGA	3 cut(s)	368, 392, 413
Hpy8I	GTNNAC	3 cut(s)	76, 567, 638
HpyAV	CCTTC	1 cut(s)	603
HpyCH4III	ACNGT	2 cut(s)	191, 635
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	7 cut(s)	195, 573, 638, 702, 726, 747, 773
HpyF3I	CTNAG	3 cut(s)	491, 605, 873
HpySE526I	ACGT	1 cut(s)	648
Hsp92II	CATG	1 cut(s)	675
HspAI	GCGC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	729
LweI	GCATC	1 cut(s)	782
MaeII	ACGT	1 cut(s)	648
MaeIII	GTNAC	2 cut(s)	209, 626
MboII	GAAGA	3 cut(s)	12, 237, 590
MhlI	GDGCHC	2 cut(s)	507, 640
MluCI	AATT	6 cut(s)	120, 202, 416, 430, 534, 590
MnlI	CCTC	5 cut(s)	25, 116, 145, 541, 762
MseI	TTAA	2 cut(s)	111, 428
MslI	CAYNNNNRTG	1 cut(s)	661
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	2 cut(s)	560, 758
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	671
NlaIII	CATG	1 cut(s)	675
NlaIV	GGNNCC	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	661
PaeR7I	CTCGAG	1 cut(s)	659
PasI	CCCWGGG	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PfeI	GAWTC	7 cut(s)	4, 299, 323, 347, 371, 395, 527
PkrI	GCNGC	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	165
Psp1406I	AACGTT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	506
PspXI	VCTCGAGB	1 cut(s)	659
PstNI	CAGNNNCTG	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	661
SaqAI	TTAA	2 cut(s)	111, 428
SatI	GCNGC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	507, 640
SetI	ASST	7 cut(s)	12, 143, 163, 219, 243, 651, 874
SfaNI	GCATC	1 cut(s)	782
SfcI	CTRYAG	1 cut(s)	540
Sfr274I	CTCGAG	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	169, 659
SmoI	CTYRAG	2 cut(s)	169, 659
Sse9I	AATT	6 cut(s)	120, 202, 416, 430, 534, 590
SsiI	CCGC	5 cut(s)	103, 257, 327, 351, 456
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	2 cut(s)	191, 635
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	3 cut(s)	48, 660, 736
TasI	AATT	6 cut(s)	120, 202, 416, 430, 534, 590
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	7 cut(s)	4, 299, 323, 347, 371, 395, 527
Tru1I	TTAA	2 cut(s)	111, 428
Tru9I	TTAA	2 cut(s)	111, 428
TscAI	CASTG	4 cut(s)	181, 202, 499, 609
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspRI	CASTG	4 cut(s)	181, 202, 499, 609
VneI	GTGCAC	1 cut(s)	636
XapI	RAATTY	3 cut(s)	202, 416, 590
XhoI	CTCGAG	1 cut(s)	659
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.