Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

73607030 .. 73607863

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0618300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCGCCTCTCTCTCTACTCTCACACTCGGCACTCCTTCTTACCCATCGACCACCACCTCTTCCTTCCCTTCCCACACTCCCAAACCCTCCCTCCAATTCCCCTTCACCCCCCAAAACCCTACCCTCTCCCACCGCGCAACCCACCTCCGCCCCGTCGCCGCCGTCGCCGCCGCCCCGGAGAAAATCGAGAAGCTCGGCGCCGACATCTCCAGCCTCACTCTCGAGGAGGCCCGCATCCTCGTCGACTACCTCCAGGACAAGCTCGGCGTCTCCGCCGCCTCCCTCGCTCCCGCCGCCGCTGTCGCCGCTGCCCCCGGCGCCGGAGACGCGCCCGCCGCGGCGGAGGAGAAGACGGAGTTCGACGTGGTGATTGAGGAGGTCCCGAGCAATGCGAGAATCGCGGTGATTAAGGCGGTTAGGGCTTTGACGAGCTTGGCTTTGAAGGAGGCCAAGGAACTGATTGAAGGGTTGCCTAAGAAATTCAAGGAGGGGGTTTCGAAGGACGATGCCGAAGACGCCAAGAAGCAGCTGGAAGCCGCCGGAGCTAAAGTCGGAATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

188

Amino Acids

19.43

Weight (kDa)

5.67

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L12_N	PF16320	62 - 110	1.3e-13	Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L12	PF00542	121 - 187	6.5e-25	Ribosomal protein L7/L12 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	200, 320
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	4 cut(s)	138, 332, 341, 404
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	482
AcyI	GRCGYC	4 cut(s)	201, 270, 321, 519
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	445, 467, 487
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	5 cut(s)	196, 265, 435, 532, 548
AluI	AGCT	5 cut(s)	196, 265, 435, 532, 548
Alw26I	GTCTC	2 cut(s)	277, 321
Ama87I	CYCGRG	2 cut(s)	224, 385
AoxI	GGCC	3 cut(s)	3, 231, 450
ApeKI	GCWGC	2 cut(s)	311, 529
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	4 cut(s)	140, 203, 323, 334
AspS9I	GGNCC	2 cut(s)	232, 382
AsuC2I	CCSGG	2 cut(s)	179, 318
AsuHPI	GGTGA	3 cut(s)	100, 382, 418
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	2 cut(s)	224, 385
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	2 cut(s)	200, 320
BbsI	GAAGAC	2 cut(s)	359, 522
BbvI	GCAGC	2 cut(s)	298, 541
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	149
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	2 cut(s)	179, 318
BcoDI	GTCTC	2 cut(s)	277, 321
BfoI	RGCGCY	2 cut(s)	204, 324
Bme1390I	CCNGG	3 cut(s)	179, 257, 318
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	2 cut(s)	224, 385
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	232, 382
BmiI	GGNNCC	3 cut(s)	202, 322, 384
BmrFI	CCNGG	3 cut(s)	179, 257, 318
BmsI	GCATC	2 cut(s)	246, 499
BpiI	GAAGAC	2 cut(s)	359, 522
BpmI	CTGGAG	2 cut(s)	196, 239
Bpu14I	TTCGAA	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	179, 318
BsaHI	GRCGYC	4 cut(s)	201, 270, 321, 519
BsaJI	CCNNGG	4 cut(s)	177, 316, 339, 453
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	4 cut(s)	177, 316, 339, 453
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	397
BseRI	GAGGAG	3 cut(s)	242, 362, 392
BseXI	GCAGC	2 cut(s)	298, 541
Bsh1236I	CGCG	4 cut(s)	138, 332, 341, 404
BshFI	GGCC	3 cut(s)	5, 233, 452
BshNI	GGYRCC	2 cut(s)	200, 320
BsiHKCI	CYCGRG	2 cut(s)	224, 385
BsiSI	CCGG	4 cut(s)	179, 318, 324, 543
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	277, 321
BsmBI	CGTCTC	2 cut(s)	277, 321
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	5, 233, 452
BsoBI	CYCGRG	2 cut(s)	224, 385
Bsp119I	TTCGAA	1 cut(s)	500
BspANI	GGCC	3 cut(s)	5, 233, 452
BspFNI	CGCG	4 cut(s)	138, 332, 341, 404
BspLI	GGNNCC	3 cut(s)	202, 322, 384
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	200, 320
BsrDI	GCAATG	1 cut(s)	397
BssECI	CCNNGG	4 cut(s)	177, 316, 339, 453
BssNI	GRCGYC	4 cut(s)	201, 270, 321, 519
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	4 cut(s)	201, 270, 321, 519
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	235, 336
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	4 cut(s)	138, 332, 341, 404
BstH2I	RGCGCY	2 cut(s)	204, 324
BstHHI	GCGC	4 cut(s)	140, 203, 323, 334
BstMAI	GTCTC	2 cut(s)	277, 321
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	177, 255, 316
BstUI	CGCG	4 cut(s)	138, 332, 341, 404
BstV1I	GCAGC	2 cut(s)	298, 541
BstV2I	GAAGAC	2 cut(s)	359, 522
BsuRI	GGCC	3 cut(s)	5, 233, 452
BtgI	CCRYGG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	235, 336
CfoI	GCGC	4 cut(s)	140, 203, 323, 334
Cfr13I	GGNCC	2 cut(s)	232, 382
Cfr42I	CCGCGG	1 cut(s)	342
CseI	GACGC	3 cut(s)	259, 338, 527
DdeI	CTNAG	1 cut(s)	477
DinI	GGCGCC	2 cut(s)	202, 322
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	3 cut(s)	140, 265, 359
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	382
Eco88I	CYCGRG	2 cut(s)	224, 385
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	453
EgeI	GGCGCC	2 cut(s)	202, 322
EheI	GGCGCC	2 cut(s)	202, 322
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	2 cut(s)	277, 321
FaqI	GGGAC	1 cut(s)	368
FauI	CCCGC	3 cut(s)	242, 301, 343
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	1 cut(s)	224
GlaI	GCGC	4 cut(s)	139, 202, 322, 333
GsuI	CTGGAG	2 cut(s)	196, 239
HaeII	RGCGCY	2 cut(s)	204, 324
HaeIII	GGCC	3 cut(s)	5, 233, 452
HapII	CCGG	4 cut(s)	179, 318, 324, 543
HgaI	GACGC	3 cut(s)	259, 338, 527
HhaI	GCGC	4 cut(s)	140, 203, 323, 334
Hin1I	GRCGYC	4 cut(s)	201, 270, 321, 519
Hin6I	GCGC	4 cut(s)	138, 201, 321, 332
HinP1I	GCGC	4 cut(s)	138, 201, 321, 332
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	4 cut(s)	179, 318, 324, 543
HphI	GGTGA	3 cut(s)	100, 382, 418
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	557, 566
Hpy188III	TCNNGA	3 cut(s)	190, 224, 385
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	4 cut(s)	161, 170, 248, 368
HpyAV	CCTTC	7 cut(s)	48, 76, 81, 115, 439, 461, 496
HpyCH4IV	ACGT	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	4 cut(s)	201, 270, 321, 519
HspAI	GCGC	4 cut(s)	138, 201, 321, 332
KasI	GGCGCC	2 cut(s)	200, 320
KspI	CCGCGG	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	295, 545
LpnPI	CCDG	8 cut(s)	192, 226, 242, 269, 331, 337, 518, 556
Lsp1109I	GCAGC	2 cut(s)	298, 541
LweI	GCATC	2 cut(s)	246, 499
MaeII	ACGT	1 cut(s)	366
MboII	GAAGA	3 cut(s)	54, 364, 527
MluCI	AATT	3 cut(s)	98, 482, 558
Mly113I	GGCGCC	2 cut(s)	201, 321
MmeI	TCCRAC	1 cut(s)	535
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	4 cut(s)	302, 311, 341, 532
MspI	CCGG	4 cut(s)	179, 318, 324, 543
MspR9I	CCNGG	3 cut(s)	179, 257, 318
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	4 cut(s)	138, 332, 341, 404
NarI	GGCGCC	2 cut(s)	201, 321
NciI	CCSGG	2 cut(s)	179, 318
NlaIV	GGNNCC	3 cut(s)	202, 322, 384
NmeAIII	GCCGAG	3 cut(s)	9, 177, 246
NspV	TTCGAA	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	255
PluTI	GGCGCC	2 cut(s)	204, 324
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	202, 322, 384
PspPI	GGNCC	2 cut(s)	232, 382
PspPPI	RGGWCCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	532
SacII	CCGCGG	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	411
Sau96I	GGNCC	2 cut(s)	232, 382
ScrFI	CCNGG	3 cut(s)	179, 257, 318
SfaNI	GCATC	2 cut(s)	246, 499
SfoI	GGCGCC	2 cut(s)	202, 322
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	500
SgrBI	CCGCGG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	98, 482, 558
SspDI	GGCGCC	2 cut(s)	200, 320
StyD4I	CCNGG	3 cut(s)	177, 255, 316
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	6 cut(s)	50, 189, 225, 246, 363, 500
TasI	AATT	3 cut(s)	98, 482, 558
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	2 cut(s)	311, 529
TspGWI	ACGGA	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.