Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Forward (+)

1173427 .. 1174236

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAACCTCTGCTTTTCTTGCTTATGATTGTGTTCCCCAGTATTGTTAAACCAATTAGCAAAGCAGCCGATGATCTGGTCTGCCCAGTTCAAAGGTGTAGGCATGATGGTCCTGATATCAAGTTTCCATTCCGTCTACAACACTATCCCCTTCACTGTGGCCATCCAGAGTTTGAGGTTTCCTGCAGCAGCTTCACCAACATGACCATGATGAATCTTTCCTCATCATCAGGATTCTTTCCAATGCAAACAATCGATTACGAGAGTCAACAGTTTCGTGTGTATGATGAGGATGGTTGCCTCCCGAGACGCCTTCTTAATTTTACCGTCTCCTCTTCGCTCTTTCAACCAGCAGGAGTGAGTGAAGATTCCGTTTGCGGTTACGATTACATGAGGTCGAAGACCATGACGTTGTTAAATTGTACCACGGCACAAAATTTTAGCACATCCACCACACCTGCTGACACCCCCCTGTGGAAGTACATGGCGATCAAATGTCTGAGTGACCCAGGGCATTATCAAGTTCTGGCTACTACTGAGTATTTTACAATGTCTGACTTGCCAATAGACTCTTGCTCTACTTTGTCAGAACTCTTTCTTCCAGTTCGACATATACAGGGTGATCATATGTATGCTTGTGAACAGGACCCTGGCTTATTTCTGAAATGGAATGAGTCGAAATTCCCAGAATGTCAAAACTGTAGTGGAAGGTGCTATTTCAGTTACACTTCCAACCAAGTCTTGTGTTACCCTCCCATTCCCAGACAAAAACACAAAGGTACGTGCCTAGTGAGCTTTCCAGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

269

Amino Acids

30.55

Weight (kDa)

5.72

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	28 - 96	1e-14	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	436, 680
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	3 cut(s)	424, 482, 781
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	2 cut(s)	92, 347
AjnI	CCWGG	3 cut(s)	508, 649, 799
AluBI	AGCT	2 cut(s)	192, 795
AluI	AGCT	2 cut(s)	192, 795
Alw26I	GTCTC	2 cut(s)	301, 334
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	3 cut(s)	65, 186, 189
ApoI	RAATTY	2 cut(s)	436, 680
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	2 cut(s)	110, 646
AsuHPI	GGTGA	2 cut(s)	187, 632
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	2 cut(s)	110, 646
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	3 cut(s)	77, 198, 201
BccI	CCATC	3 cut(s)	101, 171, 287
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	3 cut(s)	510, 651, 801
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	301, 334
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	2 cut(s)	184, 700
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	3 cut(s)	66, 187, 190
BlsI	GCNGC	3 cut(s)	67, 188, 191
Bme1390I	CCNGG	3 cut(s)	510, 651, 801
Bme18I	GGWCC	2 cut(s)	110, 646
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	110, 646
BmiI	GGNNCC	2 cut(s)	6, 648
BmrFI	CCNGG	3 cut(s)	510, 651, 801
BmrI	ACTGGG	2 cut(s)	33, 80
BmuI	ACTGGG	2 cut(s)	33, 80
BpiI	GAAGAC	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	4 cut(s)	426, 508, 509, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	3 cut(s)	39, 86, 602
BseBI	CCWGG	3 cut(s)	510, 651, 801
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	4 cut(s)	426, 508, 509, 649
BseGI	GGATG	3 cut(s)	163, 298, 446
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	491, 528
BseNI	ACTGG	3 cut(s)	39, 86, 602
BseRI	GAGGAG	1 cut(s)	322
BseXI	GCAGC	3 cut(s)	77, 198, 201
BshFI	GGCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	2 cut(s)	301, 334
BsmBI	CGTCTC	2 cut(s)	301, 334
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	73, 489, 622
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	492, 529
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	6, 648
BspMAI	CTGCAG	1 cut(s)	188
BspMI	ACCTGC	1 cut(s)	466
BsrI	ACTGG	3 cut(s)	39, 86, 602
BssECI	CCNNGG	4 cut(s)	426, 508, 509, 649
BssMI	GATC	3 cut(s)	73, 489, 622
BssNI	GRCGYC	1 cut(s)	310
Bst2UI	CCWGG	3 cut(s)	510, 651, 801
Bst4CI	ACNGT	4 cut(s)	158, 273, 328, 701
Bst6I	CTCTTC	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	783
BstDEI	CTNAG	2 cut(s)	500, 537
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	163, 298, 446
BstKTI	GATC	3 cut(s)	76, 492, 625
BstMAI	GTCTC	2 cut(s)	301, 334
BstMBI	GATC	3 cut(s)	73, 489, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 792
BstNI	CCWGG	3 cut(s)	510, 651, 801
BstSCI	CCNGG	3 cut(s)	508, 649, 799
BstSFI	CTRYAG	2 cut(s)	184, 700
BstV1I	GCAGC	3 cut(s)	77, 198, 201
BstV2I	GAAGAC	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	163, 298, 446
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	110, 646
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	423, 481, 780
CviAII	CATG	6 cut(s)	104, 202, 208, 391, 406, 484
CviJI	RGCY	6 cut(s)	68, 162, 192, 530, 654, 795
CviKI_1	RGCY	6 cut(s)	68, 162, 192, 530, 654, 795
CviQI	GTAC	3 cut(s)	423, 481, 780
DdeI	CTNAG	2 cut(s)	500, 537
DpnI	GATC	3 cut(s)	75, 491, 624
DpnII	GATC	3 cut(s)	73, 489, 622
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	110, 646
Eco88I	CYCGRG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	508, 649, 799
EcoRV	GATATC	1 cut(s)	118
Esp3I	CGTCTC	2 cut(s)	301, 334
FaeI	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
FatI	CATG	6 cut(s)	103, 201, 207, 390, 405, 483
FauNDI	CATATG	1 cut(s)	627
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	66, 187, 190
FokI	GGATG	3 cut(s)	150, 305, 433
Fsp4HI	GCNGC	3 cut(s)	66, 187, 190
FspBI	CTAG	1 cut(s)	788
GluI	GCNGC	3 cut(s)	66, 187, 190
HaeIII	GGCC	1 cut(s)	162
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HinfI	GANTC	6 cut(s)	214, 234, 265, 368, 569, 674
HphI	GGTGA	2 cut(s)	187, 632
Hpy166II	GTNNAC	3 cut(s)	137, 269, 641
Hpy188I	TCNGA	4 cut(s)	501, 556, 589, 663
Hpy188III	TCNNGA	4 cut(s)	113, 167, 231, 304
Hpy8I	GTNNAC	3 cut(s)	137, 269, 641
HpyAV	CCTTC	3 cut(s)	161, 323, 702
HpyCH4III	ACNGT	4 cut(s)	158, 273, 328, 701
HpyCH4IV	ACGT	2 cut(s)	410, 782
HpyCH4V	TGCA	2 cut(s)	186, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 792
HpyF3I	CTNAG	2 cut(s)	500, 537
HpySE526I	ACGT	2 cut(s)	410, 782
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	73, 489, 622
Lsp1109I	GCAGC	3 cut(s)	77, 198, 201
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	2 cut(s)	410, 782
MaeIII	GTNAC	4 cut(s)	380, 503, 722, 746
MalI	GATC	3 cut(s)	75, 491, 624
MboI	GATC	3 cut(s)	73, 489, 622
MboII	GAAGA	4 cut(s)	327, 377, 412, 590
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	6 cut(s)	54, 319, 418, 436, 680, 805
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	274, 563, 683
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	8 cut(s)	18, 169, 232, 283, 311, 343, 387, 762
Mox20I	TGGCCA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	3 cut(s)	48, 318, 416
MslI	CAYNNNNRTG	3 cut(s)	200, 206, 630
Msp20I	TGGCCA	1 cut(s)	162
MspR9I	CCNGG	3 cut(s)	510, 651, 801
MvaI	CCWGG	3 cut(s)	510, 651, 801
MwoI	GCNNNNNNNGC	2 cut(s)	19, 792
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	3 cut(s)	73, 489, 622
NlaIII	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
NlaIV	GGNNCC	2 cut(s)	6, 648
NmuCI	GTSAC	1 cut(s)	503
PaqCI	CACCTGC	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	214, 234, 368
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	3 cut(s)	67, 188, 191
PleI	GAGTC	3 cut(s)	273, 563, 682
PpsI	GAGTC	3 cut(s)	273, 563, 682
Ppu21I	YACGTR	1 cut(s)	783
PpuMI	RGGWCCY	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	508, 649, 799
PspGI	CCWGG	3 cut(s)	508, 649, 799
PspN4I	GGNNCC	2 cut(s)	6, 648
PspPI	GGNCC	2 cut(s)	110, 646
PspPPI	RGGWCCY	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	188
RsaI	GTAC	3 cut(s)	424, 482, 781
RsaNI	GTAC	3 cut(s)	423, 481, 780
RseI	CAYNNNNRTG	3 cut(s)	200, 206, 630
SaqAI	TTAA	3 cut(s)	48, 318, 416
SatI	GCNGC	3 cut(s)	66, 187, 190
Sau3AI	GATC	3 cut(s)	73, 489, 622
Sau96I	GGNCC	2 cut(s)	110, 646
SchI	GAGTC	3 cut(s)	274, 563, 683
ScrFI	CCNGG	3 cut(s)	510, 651, 801
SfcI	CTRYAG	2 cut(s)	184, 700
SinI	GGWCC	2 cut(s)	110, 646
SmiMI	CAYNNNNRTG	3 cut(s)	200, 206, 630
Sse9I	AATT	6 cut(s)	54, 319, 418, 436, 680, 805
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	3 cut(s)	508, 649, 799
TaaI	ACNGT	4 cut(s)	158, 273, 328, 701
TaiI	ACGT	2 cut(s)	413, 785
TaqI	TCGA	4 cut(s)	255, 398, 607, 677
TasI	AATT	6 cut(s)	54, 319, 418, 436, 680, 805
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	214, 234, 368
Tru1I	TTAA	3 cut(s)	48, 318, 416
Tru9I	TTAA	3 cut(s)	48, 318, 416
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	65, 186, 189
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	2 cut(s)	122, 361
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	110, 646
XapI	RAATTY	2 cut(s)	436, 680
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.