Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006661.1

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

5553 .. 6542

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006661.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggatatcctgttgcttctgtgtttcttgcttgttcttgcaccaaataccaaagcagataatcatcatgttcgtcagcactgcccgaaatcaaggtgtagccatgatggtcccctgatccagtttcccttccgtctaaaaggcgatcccccccactgtggaaatccagagtttgaggtttcttgcagcagaagcaacaacaccaatttgacaatgattcagctctcctcatcttcagggctgtttcccatccaaaaaatcgattacaataatagatattttgatgtctacgatagtgatggttgtatggcgagtcgcctccttaatcttacaatttttactacatccagcttgctcttttatccagtaccttatcactggagcagtgagcattataacagttgcactgaaaatttcggtcccgagcaacctccctttccatattccgagcagtctccctactcagattacgcccaatctccctattcagattacgcccaatctccctattcagattccgcccaatctccctatccagattctgcacaacctccctatccagattccgctcagttttttaaagaatttgtattattaaattgttccaccactaagaatgttagcagaaggagaaactactacatgcccgtcagatgtctcagtgtcccagggcaccatcaagttcttgctgttgaaccctcaatttctatagaggacttgccgttgccggtgtcaacttgcactactttgaaaaaaaaattctatcttccactgagaagtgtagatgacggtggtaactacgactgtgcaccggacaacgttttattactcgagtggaaaccatgggtttatttcccagaatgtcacaactgcaaaggagagtgctatatggattgcaggagcaatcgaatggagtgctatagtacttatccggatgtatatccctattatgatatgctgaagggtatgctgtctaatcacatagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

329

Amino Acids

37.7

Weight (kDa)

5.62

Isoelectric Point (pI)

76.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	672
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	931
AciI	CCGC	2 cut(s)	519, 567
AclI	AACGTT	1 cut(s)	819
AclWI	GGATC	2 cut(s)	112, 140
AcsI	RAATTY	3 cut(s)	412, 584, 758
AcuI	CTGAAG	2 cut(s)	219, 980
AfaI	GTAC	2 cut(s)	369, 925
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	695, 751
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	3 cut(s)	223, 351, 986
AluI	AGCT	3 cut(s)	223, 351, 986
Alw21I	GWGCWC	1 cut(s)	811
Alw26I	GTCTC	2 cut(s)	459, 662
Alw44I	GTGCAC	1 cut(s)	807
AlwI	GGATC	2 cut(s)	112, 140
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	2 cut(s)	422, 830
Aor13HI	TCCGGA	1 cut(s)	931
ApaLI	GTGCAC	1 cut(s)	807
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	3 cut(s)	412, 584, 758
AspS9I	GGNCC	2 cut(s)	110, 419
AvaI	CYCGRG	2 cut(s)	422, 830
AvaII	GGWCC	2 cut(s)	110, 419
BaeGI	GKGCMC	2 cut(s)	675, 811
BanI	GGYRCC	1 cut(s)	672
Bbv12I	GWGCWC	1 cut(s)	811
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	4 cut(s)	101, 257, 293, 684
BceAI	ACGGC	1 cut(s)	706
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciT130I	CCWGG	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	459, 662
BfmI	CTRYAG	2 cut(s)	708, 919
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmcAI	AGTACT	1 cut(s)	925
Bme1390I	CCNGG	1 cut(s)	669
Bme18I	GGWCC	2 cut(s)	110, 419
BmeT110I	CYCGRG	2 cut(s)	422, 830
BmgT120I	GGNCC	2 cut(s)	110, 419
BmiI	GGNNCC	3 cut(s)	112, 421, 674
BmrFI	CCNGG	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	261
BsaBI	GATNNNNATC	2 cut(s)	63, 939
BsaJI	CCNNGG	3 cut(s)	667, 668, 842
BsaWI	WCCGGW	2 cut(s)	811, 931
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	727
Bse1I	ACTGG	3 cut(s)	121, 365, 383
Bse8I	GATNNNNATC	2 cut(s)	63, 939
BseAI	TCCGGA	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	669
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	667, 668, 842
BseGI	GGATG	3 cut(s)	249, 344, 940
BseJI	GATNNNNATC	2 cut(s)	63, 939
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	4 cut(s)	477, 584, 673, 764
BseNI	ACTGG	3 cut(s)	121, 365, 383
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	2 cut(s)	675, 811
BseXI	GCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	528
BshNI	GGYRCC	1 cut(s)	672
BshVI	ATCGAT	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	811
BsiHKCI	CYCGRG	2 cut(s)	422, 830
BsiSI	CCGG	3 cut(s)	728, 812, 932
BslFI	GGGAC	3 cut(s)	96, 405, 650
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	459, 662
BsmFI	GGGAC	3 cut(s)	96, 405, 650
BsoBI	CYCGRG	2 cut(s)	422, 830
Bsp1286I	GDGCHC	2 cut(s)	675, 811
Bsp13I	TCCGGA	1 cut(s)	931
Bsp143I	GATC	2 cut(s)	117, 145
Bsp19I	CCATGG	1 cut(s)	842
BspACI	CCGC	2 cut(s)	519, 567
BspCNI	CTCAG	4 cut(s)	476, 583, 672, 765
BspDI	ATCGAT	1 cut(s)	261
BspEI	TCCGGA	1 cut(s)	931
BspLI	GGNNCC	3 cut(s)	112, 421, 674
BspPI	GGATC	2 cut(s)	112, 140
BspT107I	GGYRCC	1 cut(s)	672
BsrBI	CCGCTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	727
BsrI	ACTGG	3 cut(s)	121, 365, 383
BssAI	RCCGGY	1 cut(s)	727
BssECI	CCNNGG	3 cut(s)	667, 668, 842
BssMI	GATC	2 cut(s)	117, 145
BssT1I	CCWWGG	1 cut(s)	842
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	4 cut(s)	158, 401, 791, 806
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	6 cut(s)	463, 570, 612, 659, 773, 987
BstDSI	CCRYGG	1 cut(s)	842
BstF5I	GGATG	3 cut(s)	249, 344, 940
BstKTI	GATC	2 cut(s)	120, 148
BstMAI	GTCTC	2 cut(s)	459, 662
BstMBI	GATC	2 cut(s)	117, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	669
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	667
BstSFI	CTRYAG	2 cut(s)	708, 919
BstSLI	GKGCMC	2 cut(s)	675, 811
BstV1I	GCAGC	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	842
BtsCI	GGATG	3 cut(s)	249, 344, 940
BtsI	GCAGTG	2 cut(s)	79, 391
BtsIMutI	CAGTG	7 cut(s)	79, 154, 376, 391, 405, 667, 770
Cac8I	GCNNGC	1 cut(s)	353
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	727
Cfr13I	GGNCC	2 cut(s)	110, 419
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	368, 924
CviAII	CATG	4 cut(s)	68, 104, 643, 843
CviJI	RGCY	5 cut(s)	102, 223, 241, 351, 986
CviKI_1	RGCY	5 cut(s)	102, 223, 241, 351, 986
CviQI	GTAC	2 cut(s)	368, 924
DdeI	CTNAG	6 cut(s)	463, 570, 612, 659, 773, 987
DpnI	GATC	2 cut(s)	119, 147
DpnII	GATC	2 cut(s)	117, 145
DraI	TTTAAA	1 cut(s)	580
EciI	GGCGGA	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	842
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	110, 419
Eco57I	CTGAAG	2 cut(s)	219, 980
Eco88I	CYCGRG	2 cut(s)	422, 830
EcoRII	CCWGG	1 cut(s)	667
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	842
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	4 cut(s)	71, 107, 646, 846
FaqI	GGGAC	3 cut(s)	96, 405, 650
FatI	CATG	4 cut(s)	67, 103, 642, 842
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	3 cut(s)	236, 331, 947
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
GsuI	CTGGAG	1 cut(s)	400
HapII	CCGG	3 cut(s)	728, 812, 932
Hin1II	CATG	4 cut(s)	71, 107, 646, 846
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HinfI	GANTC	5 cut(s)	217, 313, 515, 539, 563
HpaII	CCGG	3 cut(s)	728, 812, 932
Hpy166II	GTNNAC	3 cut(s)	289, 735, 809
Hpy188I	TCNGA	5 cut(s)	448, 466, 490, 514, 653
Hpy188III	TCNNGA	5 cut(s)	167, 422, 536, 560, 932
Hpy8I	GTNNAC	3 cut(s)	289, 735, 809
HpyAV	CCTTC	3 cut(s)	139, 621, 955
HpyCH4III	ACNGT	4 cut(s)	158, 401, 791, 806
HpyCH4IV	ACGT	1 cut(s)	819
HpyCH4V	TGCA	8 cut(s)	41, 186, 405, 545, 741, 809, 873, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpyF3I	CTNAG	6 cut(s)	463, 570, 612, 659, 773, 987
HpySE526I	ACGT	1 cut(s)	819
Hsp92II	CATG	4 cut(s)	71, 107, 646, 846
Kpn2I	TCCGGA	1 cut(s)	931
Kzo9I	GATC	2 cut(s)	117, 145
LmnI	GCTCC	2 cut(s)	381, 900
Lsp1109I	GCAGC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	2 cut(s)	794, 863
MalI	GATC	2 cut(s)	119, 147
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	2 cut(s)	117, 145
MboII	GAAGA	2 cut(s)	225, 758
MhlI	GDGCHC	2 cut(s)	675, 811
MluCI	AATT	7 cut(s)	205, 333, 412, 584, 598, 702, 758
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	7 cut(s)	169, 238, 329, 441, 561, 706, 709
MroI	TCCGGA	1 cut(s)	931
MseI	TTAA	3 cut(s)	324, 579, 596
MspI	CCGG	3 cut(s)	728, 812, 932
MspR9I	CCNGG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	842
NdeII	GATC	2 cut(s)	117, 145
NlaIII	CATG	4 cut(s)	71, 107, 646, 846
NlaIV	GGNNCC	3 cut(s)	112, 421, 674
NmuCI	GTSAC	1 cut(s)	863
NspI	RCATGY	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	830
PasI	CCCWGGG	1 cut(s)	668
PfeI	GAWTC	4 cut(s)	217, 515, 539, 563
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PsiI	TTATAA	1 cut(s)	396
Psp1406I	AACGTT	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	3 cut(s)	112, 421, 674
PspPI	GGNCC	2 cut(s)	110, 419
PspXI	VCTCGAGB	1 cut(s)	830
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	369, 925
RsaNI	GTAC	2 cut(s)	368, 924
SaqAI	TTAA	3 cut(s)	324, 579, 596
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	117, 145
Sau96I	GGNCC	2 cut(s)	110, 419
ScaI	AGTACT	1 cut(s)	925
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	2 cut(s)	675, 811
SetI	ASST	9 cut(s)	98, 180, 225, 353, 373, 433, 553, 822, 988
SfcI	CTRYAG	2 cut(s)	708, 919
Sfr274I	CTCGAG	1 cut(s)	830
SinI	GGWCC	2 cut(s)	110, 419
SlaI	CTCGAG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	7 cut(s)	205, 333, 412, 584, 598, 702, 758
SsiI	CCGC	2 cut(s)	519, 567
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	4 cut(s)	158, 401, 791, 806
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	3 cut(s)	261, 831, 907
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	7 cut(s)	205, 333, 412, 584, 598, 702, 758
TatI	WGTACW	1 cut(s)	923
TfiI	GAWTC	4 cut(s)	217, 515, 539, 563
Tru1I	TTAA	3 cut(s)	324, 579, 596
Tru9I	TTAA	3 cut(s)	324, 579, 596
TscAI	CASTG	7 cut(s)	86, 161, 383, 391, 412, 667, 777
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	1 cut(s)	863
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	7 cut(s)	86, 161, 383, 391, 412, 667, 777
VneI	GTGCAC	1 cut(s)	807
VpaK11BI	GGWCC	2 cut(s)	110, 419
XapI	RAATTY	3 cut(s)	412, 584, 758
XceI	RCATGY	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	288
ZrmI	AGTACT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.