Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Forward (+)

1173427 .. 1176096

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAACCTCTGCTTTTCTTGCTTATGATTGTGTTCCCCAGTATTGTTAAACCAATTAGCAAAGCAGCCGATGATCTGGTCTGCCCAGTTCAAAGGTGTAGGCATGATGGTCCTGATATCAAGTTTCCATTCCGTCTACAACACTATCCCCTTCACTGTGGCCATCCAGAGTTTGAGGTTTCCTGCAGCAGCTTCACCAACATGACCATGATGAATCTTTCCTCATCATCAGGATTCTTTCCAATGCAAACAATCGATTACGAGAGTCAACAGTTTCGTGTGTATGATGAGGATGGTTGCCTCCCGAGACGCCTTCTTAATTTTACCGTCTCCTCTTCGCTCTTTCAACCAGCAGGAGTGAGTGAAGATTCCGTTTGCGGTTACGATTACATGAGGTCGAAGACCATGACGTTGTTAAATTGTACCACGGCACAAAATTTTAGCACATCCACCACACCTGCTGACACCCCCCTGTGGAAGTACATGGCGATCAAATGTCTGAGTGACCCAGGGCATTATCAAGTTCTGGCTACTACTGAGTATTTTACAATGTCTGACTTGCCAATAGACTCTTGCTCTACTTTGTCAGAACTCTTTCTTCCAGTTCGACATATACAGGGTGATCATATGTATGCTTGTGAACAGGACCCTGGCTTATTTCTGAAATGGAATGAGTCGAAATTCCCAGAATGTCAAAACTGTAGTGGAAGGTGCTATTTCAGTTACACTTCCAACCAAGTCTTGTGTTACCCTCCCATTCCCAGACAAAAACACAAAGGTCTGTCAATTGTCATCGGAGTGAGCGTATGTGGGTTTGTTGTCTTGTCAACTGCGGCGGTAGCCGTCTTTTACCATTTAAAGCAATCAAAGAGGAGAGAGGAAAAGGAGAATCAAAGAAAGACTCCTATTGCACCACGGATTTTCCTCGACATTGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

313

Amino Acids

35.56

Weight (kDa)

6.49

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	28 - 96	1.3e-14	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	3 cut(s)	378, 833, 836
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	436, 680
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	2 cut(s)	424, 482
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	2 cut(s)	92, 347
AjnI	CCWGG	2 cut(s)	508, 649
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	301, 334
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	3 cut(s)	65, 186, 189
ApoI	RAATTY	2 cut(s)	436, 680
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	2 cut(s)	110, 646
AsuHPI	GGTGA	2 cut(s)	187, 632
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	2 cut(s)	110, 646
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	3 cut(s)	77, 198, 201
BccI	CCATC	3 cut(s)	101, 171, 287
BceAI	ACGGC	2 cut(s)	444, 827
BciT130I	CCWGG	2 cut(s)	510, 651
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	301, 334
BfmI	CTRYAG	2 cut(s)	184, 700
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	4 cut(s)	66, 187, 190, 834
BlsI	GCNGC	4 cut(s)	67, 188, 191, 835
Bme1390I	CCNGG	2 cut(s)	510, 651
Bme18I	GGWCC	2 cut(s)	110, 646
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	110, 646
BmiI	GGNNCC	2 cut(s)	6, 648
BmrFI	CCNGG	2 cut(s)	510, 651
BmrI	ACTGGG	2 cut(s)	33, 80
BmuI	ACTGGG	2 cut(s)	33, 80
BpiI	GAAGAC	1 cut(s)	407
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	5 cut(s)	426, 508, 509, 649, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	3 cut(s)	39, 86, 602
BseBI	CCWGG	2 cut(s)	510, 651
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	5 cut(s)	426, 508, 509, 649, 914
BseGI	GGATG	3 cut(s)	163, 298, 446
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	491, 528
BseNI	ACTGG	3 cut(s)	39, 86, 602
BseRI	GAGGAG	2 cut(s)	322, 886
BseXI	GCAGC	3 cut(s)	77, 198, 201
BshFI	GGCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	2 cut(s)	301, 334
BsmBI	CGTCTC	2 cut(s)	301, 334
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	73, 489, 622
BspACI	CCGC	3 cut(s)	378, 833, 836
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	492, 529
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	6, 648
BspMAI	CTGCAG	1 cut(s)	188
BspMI	ACCTGC	1 cut(s)	466
BsrI	ACTGG	3 cut(s)	39, 86, 602
BssECI	CCNNGG	5 cut(s)	426, 508, 509, 649, 914
BssMI	GATC	3 cut(s)	73, 489, 622
BssNI	GRCGYC	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	510, 651
Bst4CI	ACNGT	4 cut(s)	158, 273, 328, 701
Bst6I	CTCTTC	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	500, 537
BstDSI	CCRYGG	2 cut(s)	426, 914
BstF5I	GGATG	3 cut(s)	163, 298, 446
BstKTI	GATC	3 cut(s)	76, 492, 625
BstMAI	GTCTC	2 cut(s)	301, 334
BstMBI	GATC	3 cut(s)	73, 489, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 839
BstNI	CCWGG	2 cut(s)	510, 651
BstSCI	CCNGG	2 cut(s)	508, 649
BstSFI	CTRYAG	2 cut(s)	184, 700
BstV1I	GCAGC	3 cut(s)	77, 198, 201
BstV2I	GAAGAC	1 cut(s)	407
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	426, 914
BtsCI	GGATG	3 cut(s)	163, 298, 446
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	110, 646
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	423, 481
CviAII	CATG	6 cut(s)	104, 202, 208, 391, 406, 484
CviJI	RGCY	6 cut(s)	68, 162, 192, 530, 654, 842
CviKI_1	RGCY	6 cut(s)	68, 162, 192, 530, 654, 842
CviQI	GTAC	2 cut(s)	423, 481
DdeI	CTNAG	2 cut(s)	500, 537
DpnI	GATC	3 cut(s)	75, 491, 624
DpnII	GATC	3 cut(s)	73, 489, 622
DraI	TTTAAA	1 cut(s)	858
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	110, 646
Eco88I	CYCGRG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	508, 649
EcoRV	GATATC	1 cut(s)	118
Esp3I	CGTCTC	2 cut(s)	301, 334
FaeI	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
FatI	CATG	6 cut(s)	103, 201, 207, 390, 405, 483
FauNDI	CATATG	1 cut(s)	627
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	66, 187, 190, 834
FokI	GGATG	3 cut(s)	150, 305, 433
Fsp4HI	GCNGC	4 cut(s)	66, 187, 190, 834
GluI	GCNGC	4 cut(s)	66, 187, 190, 834
HaeIII	GGCC	1 cut(s)	162
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
HincII	GTYRAC	2 cut(s)	269, 828
HindII	GTYRAC	2 cut(s)	269, 828
HinfI	GANTC	8 cut(s)	214, 234, 265, 368, 569, 674, 889, 901
HphI	GGTGA	2 cut(s)	187, 632
Hpy166II	GTNNAC	5 cut(s)	137, 269, 641, 828, 937
Hpy188I	TCNGA	5 cut(s)	501, 556, 589, 663, 797
Hpy188III	TCNNGA	4 cut(s)	113, 167, 231, 304
Hpy8I	GTNNAC	5 cut(s)	137, 269, 641, 828, 937
HpyAV	CCTTC	3 cut(s)	161, 323, 702
HpyCH4III	ACNGT	4 cut(s)	158, 273, 328, 701
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	3 cut(s)	186, 247, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 839
HpyF3I	CTNAG	2 cut(s)	500, 537
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	73, 489, 622
Lsp1109I	GCAGC	3 cut(s)	77, 198, 201
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	4 cut(s)	380, 503, 722, 746
MalI	GATC	3 cut(s)	75, 491, 624
MboI	GATC	3 cut(s)	73, 489, 622
MboII	GAAGA	4 cut(s)	327, 377, 412, 590
MfeI	CAATTG	1 cut(s)	786
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	6 cut(s)	54, 319, 418, 436, 680, 786
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	4 cut(s)	274, 563, 683, 895
MmeI	TCCRAC	1 cut(s)	756
Mox20I	TGGCCA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	4 cut(s)	48, 318, 416, 857
MslI	CAYNNNNRTG	4 cut(s)	200, 206, 630, 797
Msp20I	TGGCCA	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	510, 651
MunI	CAATTG	1 cut(s)	786
MvaI	CCWGG	2 cut(s)	510, 651
MwoI	GCNNNNNNNGC	2 cut(s)	19, 839
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	3 cut(s)	73, 489, 622
NlaIII	CATG	6 cut(s)	107, 205, 211, 394, 409, 487
NlaIV	GGNNCC	2 cut(s)	6, 648
NmuCI	GTSAC	1 cut(s)	503
PaqCI	CACCTGC	1 cut(s)	466
PasI	CCCWGGG	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	4 cut(s)	214, 234, 368, 889
PkrI	GCNGC	4 cut(s)	67, 188, 191, 835
PleI	GAGTC	4 cut(s)	273, 563, 682, 895
PpsI	GAGTC	4 cut(s)	273, 563, 682, 895
PpuMI	RGGWCCY	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	2 cut(s)	508, 649
PspGI	CCWGG	2 cut(s)	508, 649
PspN4I	GGNNCC	2 cut(s)	6, 648
PspPI	GGNCC	2 cut(s)	110, 646
PspPPI	RGGWCCY	1 cut(s)	646
PstI	CTGCAG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	424, 482
RsaNI	GTAC	2 cut(s)	423, 481
RseI	CAYNNNNRTG	4 cut(s)	200, 206, 630, 797
SaqAI	TTAA	4 cut(s)	48, 318, 416, 857
SatI	GCNGC	4 cut(s)	66, 187, 190, 834
Sau3AI	GATC	3 cut(s)	73, 489, 622
Sau96I	GGNCC	2 cut(s)	110, 646
SchI	GAGTC	4 cut(s)	274, 563, 683, 895
ScrFI	CCNGG	2 cut(s)	510, 651
SetI	ASST	9 cut(s)	10, 98, 180, 194, 398, 413, 460, 713, 781
SfcI	CTRYAG	2 cut(s)	184, 700
SinI	GGWCC	2 cut(s)	110, 646
SmiMI	CAYNNNNRTG	4 cut(s)	200, 206, 630, 797
Sse9I	AATT	6 cut(s)	54, 319, 418, 436, 680, 786
SsiI	CCGC	3 cut(s)	378, 833, 836
StyD4I	CCNGG	2 cut(s)	508, 649
TaaI	ACNGT	4 cut(s)	158, 273, 328, 701
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	5 cut(s)	255, 398, 607, 677, 927
TasI	AATT	6 cut(s)	54, 319, 418, 436, 680, 786
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	4 cut(s)	214, 234, 368, 889
Tru1I	TTAA	4 cut(s)	48, 318, 416, 857
Tru9I	TTAA	4 cut(s)	48, 318, 416, 857
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	65, 186, 189
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	3 cut(s)	122, 361, 931
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	110, 646
XapI	RAATTY	2 cut(s)	436, 680
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.