Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006661.1

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

4263 .. 5336

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006661.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggtggtggcagccatctggtattatgtgaagaaatcagacaggatagaggaaaaggaaaatcaaatcaagattgaaaagttcctagatgatcacaaatcccatgtaccaacaagatattcttatgctgatataaagaagatgacaaatggattcagaaagaagttgggtgaaggaggttttggaagtgttttcagtggaaagcttccaagtaatggagttccggtagccataaaagtcctcaagggttctaaaggaaatggagatgaatttgttaatgaagtgggaaccattggtaggattcaccacataaacgtggttcgcctacttgggttttctgctgaaggaggcaagcgtgctcttatttatgaagacatgccaaacagctctctggagaagtttatcacatctaaagatcgatctagtcataacactgcttcatttgattggatgaaacttcgcaacatcatcacaggtatagcaaagggaatcgagtatctacaccaagggtgcgaccaaaggatcctccactttgatatcaagcctcataatatcttgctagaccatgactttaatcccaagatctctgattttggtctggccaaactctgttccaaggaagacagtcttgtatctatgactgctgccagaggcaccataggctacatagcacctgaagtgtttaatggaaactttggaaccgtctcctacaaatcagatgtctacagttttgggatgctagtgcttgaagttattggagctaggaaggaatccgctcttacatcggccagcagtgacgtgtattttcctgaattgatttacaagtgtctcgttcaaggagaagagttggatttggagctaggtggtgacggagatgctcaaattgctaagagacttgcaaatattgcactttggtgcatccagtggtaccctgtgaatcgcccatccatgaaagcagttgttagaatgctagaaggaccctctgaaagcttgatcatgccacccaatccatttgcttcaacaactcacacggaaccaacacagcaacaccatctagctgaccaggcagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

357

Amino Acids

39.7

Weight (kDa)

6.87

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	927
AccB1I	GGYRCC	2 cut(s)	653, 927
AccB7I	CCANNNNNTGG	1 cut(s)	215
AccBSI	CCGCTC	1 cut(s)	776
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	774
AclWI	GGATC	2 cut(s)	517, 530
AcoI	YGGCCR	2 cut(s)	600, 786
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	363, 696
AfaI	GTAC	2 cut(s)	108, 929
AfiI	CCNNNNNNNGG	2 cut(s)	215, 297
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	4 cut(s)	77, 749, 836, 1020
AjiI	CACGTC	1 cut(s)	799
AjnI	CCWGG	1 cut(s)	1062
AjuI	GAANNNNNNNTTGG	4 cut(s)	103, 135, 165, 197
AleI	CACNNNNGTG	1 cut(s)	913
AluBI	AGCT	6 cut(s)	205, 387, 761, 859, 990, 1058
AluI	AGCT	6 cut(s)	205, 387, 761, 859, 990, 1058
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	3 cut(s)	709, 833, 886
AlwI	GGATC	2 cut(s)	517, 530
AoxI	GGCC	2 cut(s)	600, 786
ApeKI	GCWGC	2 cut(s)	11, 644
ApoI	RAATTY	1 cut(s)	269
ArsI	GACNNNNNNTTYG	2 cut(s)	705, 737
Asp718I	GGTACC	1 cut(s)	927
AspS9I	GGNCC	1 cut(s)	977
AsuHPI	GGTGA	3 cut(s)	182, 296, 878
AvaII	GGWCC	1 cut(s)	977
BalI	TGGCCA	1 cut(s)	602
BamHI	GGATCC	1 cut(s)	522
BanI	GGYRCC	2 cut(s)	653, 927
BbsI	GAAGAC	2 cut(s)	378, 627
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	23, 631
BccI	CCATC	3 cut(s)	23, 952, 1059
BciT130I	CCWGG	1 cut(s)	1064
BclI	TGATCA	2 cut(s)	91, 993
BcoDI	GTCTC	3 cut(s)	709, 833, 886
BfaI	CTAG	8 cut(s)	86, 423, 560, 740, 762, 860, 971, 1055
BfmI	CTRYAG	1 cut(s)	724
BglII	AGATCT	1 cut(s)	582
BisI	GCNGC	2 cut(s)	12, 645
BlsI	GCNGC	2 cut(s)	13, 646
Bme1390I	CCNGG	1 cut(s)	1064
Bme18I	GGWCC	1 cut(s)	977
BmgBI	CACGTC	1 cut(s)	799
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	7 cut(s)	289, 524, 655, 700, 929, 979, 1035
BmrFI	CCNGG	1 cut(s)	1064
BmsI	GCATC	3 cut(s)	726, 865, 927
BpiI	GAAGAC	2 cut(s)	378, 627
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	227
Bsa29I	ATCGAT	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	505, 615
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 297
Bse1I	ACTGG	1 cut(s)	922
BseBI	CCWGG	1 cut(s)	1064
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	505, 615
BseGI	GGATG	4 cut(s)	456, 741, 918, 944
BseLI	CCNNNNNNNGG	2 cut(s)	215, 297
BseNI	ACTGG	1 cut(s)	922
BseXI	GCAGC	2 cut(s)	23, 631
BshFI	GGCC	2 cut(s)	602, 788
BshNI	GGYRCC	2 cut(s)	653, 927
BshVI	ATCGAT	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	215, 297
BsmAI	GTCTC	3 cut(s)	709, 833, 886
BsmBI	CGTCTC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	972
BsnI	GGCC	2 cut(s)	602, 788
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	2 cut(s)	602, 788
BspDI	ATCGAT	1 cut(s)	418
BspLI	GGNNCC	7 cut(s)	289, 524, 655, 700, 929, 979, 1035
BspPI	GGATC	2 cut(s)	517, 530
BspT107I	GGYRCC	2 cut(s)	653, 927
BsrBI	CCGCTC	1 cut(s)	776
BsrI	ACTGG	1 cut(s)	922
BssECI	CCNNGG	2 cut(s)	505, 615
BssMI	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
BssT1I	CCWWGG	2 cut(s)	505, 615
Bst2UI	CCWGG	1 cut(s)	1064
Bst4CI	ACNGT	3 cut(s)	626, 703, 728
Bst6I	CTCTTC	1 cut(s)	837
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstC8I	GCNNGC	3 cut(s)	353, 357, 790
BstDEI	CTNAG	1 cut(s)	888
BstF5I	GGATG	4 cut(s)	456, 741, 918, 944
BstKTI	GATC	6 cut(s)	94, 418, 422, 525, 585, 996
BstMAI	GTCTC	3 cut(s)	709, 833, 886
BstMBI	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
BstMWI	GCNNNNNNNGC	4 cut(s)	660, 884, 905, 1064
BstNI	CCWGG	1 cut(s)	1064
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	1062
BstSFI	CTRYAG	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	23, 631
BstV2I	GAAGAC	2 cut(s)	378, 627
BstX2I	RGATCY	2 cut(s)	522, 582
BstYI	RGATCY	2 cut(s)	522, 582
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	602, 788
BsuTUI	ATCGAT	1 cut(s)	418
BtrI	CACGTC	1 cut(s)	799
BtsCI	GGATG	4 cut(s)	456, 741, 918, 944
BtsI	GCAGTG	2 cut(s)	432, 799
BtsIMutI	CAGTG	4 cut(s)	202, 432, 799, 929
Cac8I	GCNNGC	3 cut(s)	353, 357, 790
Cfr13I	GGNCC	1 cut(s)	977
ClaI	ATCGAT	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	107, 928
CviAII	CATG	5 cut(s)	104, 376, 566, 949, 997
CviQI	GTAC	2 cut(s)	107, 928
DdeI	CTNAG	1 cut(s)	888
DpnI	GATC	6 cut(s)	93, 417, 421, 524, 584, 995
DpnII	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
EaeI	YGGCCR	2 cut(s)	600, 786
Eam1104I	CTCTTC	1 cut(s)	837
EarI	CTCTTC	1 cut(s)	837
Eco130I	CCWWGG	2 cut(s)	505, 615
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	977
Eco57I	CTGAAG	2 cut(s)	363, 696
EcoO109I	RGGNCCY	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	1062
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	505, 615
ErhI	CCWWGG	2 cut(s)	505, 615
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	5 cut(s)	107, 379, 569, 952, 1000
FalI	AAGNNNNNCTT	4 cut(s)	106, 138, 612, 644
FatI	CATG	5 cut(s)	103, 375, 565, 948, 996
FbaI	TGATCA	2 cut(s)	91, 993
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	12, 645
FokI	GGATG	4 cut(s)	463, 748, 905, 931
Fsp4HI	GCNGC	2 cut(s)	12, 645
FspBI	CTAG	8 cut(s)	86, 423, 560, 740, 762, 860, 971, 1055
GluI	GCNGC	2 cut(s)	12, 645
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	602, 788
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	5 cut(s)	107, 379, 569, 952, 1000
HindIII	AAGCTT	2 cut(s)	203, 988
HinfI	GANTC	5 cut(s)	153, 301, 489, 770, 937
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	3 cut(s)	182, 296, 878
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	5 cut(s)	40, 158, 589, 718, 985
Hpy188III	TCNNGA	3 cut(s)	70, 392, 809
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	4 cut(s)	167, 338, 760, 968
HpyCH4III	ACNGT	3 cut(s)	626, 703, 728
HpyCH4IV	ACGT	2 cut(s)	315, 798
HpyCH4V	TGCA	3 cut(s)	899, 908, 918
HpyF10VI	GCNNNNNNNGC	4 cut(s)	660, 884, 905, 1064
HpyF3I	CTNAG	1 cut(s)	888
HpySE526I	ACGT	2 cut(s)	315, 798
Hsp92II	CATG	5 cut(s)	107, 379, 569, 952, 1000
KpnI	GGTACC	1 cut(s)	931
Ksp22I	TGATCA	2 cut(s)	91, 993
Kzo9I	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
LmnI	GCTCC	2 cut(s)	758, 856
Lsp1109I	GCAGC	2 cut(s)	23, 631
LweI	GCATC	3 cut(s)	726, 865, 927
MaeI	CTAG	8 cut(s)	86, 423, 560, 740, 762, 860, 971, 1055
MaeII	ACGT	2 cut(s)	315, 798
MaeIII	GTNAC	2 cut(s)	794, 866
MalI	GATC	6 cut(s)	93, 417, 421, 524, 584, 995
MbiI	CCGCTC	1 cut(s)	776
MboI	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
MboII	GAAGA	5 cut(s)	43, 151, 383, 632, 854
MflI	RGATCY	2 cut(s)	522, 582
MhlI	GDGCHC	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	3 cut(s)	269, 812, 882
MluNI	TGGCCA	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	828
MnlI	CCTC	8 cut(s)	43, 170, 251, 341, 536, 555, 644, 991
Mox20I	TGGCCA	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	3 cut(s)	276, 573, 684
MslI	CAYNNNNRTG	2 cut(s)	314, 913
Msp20I	TGGCCA	1 cut(s)	602
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	1064
Mva1269I	GAATGC	1 cut(s)	972
MvaI	CCWGG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	4 cut(s)	660, 884, 905, 1064
NdeII	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
NlaIII	CATG	5 cut(s)	107, 379, 569, 952, 1000
NlaIV	GGNNCC	7 cut(s)	289, 524, 655, 700, 929, 979, 1035
NmuCI	GTSAC	2 cut(s)	794, 866
NspI	RCATGY	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	913
PctI	GAATGC	1 cut(s)	972
PfeI	GAWTC	5 cut(s)	153, 301, 489, 770, 937
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	13, 646
PpuMI	RGGWCCY	1 cut(s)	977
Psp5II	RGGWCCY	1 cut(s)	977
Psp6I	CCWGG	1 cut(s)	1062
PspGI	CCWGG	1 cut(s)	1062
PspN4I	GGNNCC	7 cut(s)	289, 524, 655, 700, 929, 979, 1035
PspPI	GGNCC	1 cut(s)	977
PspPPI	RGGWCCY	1 cut(s)	977
PsuI	RGATCY	2 cut(s)	522, 582
RsaI	GTAC	2 cut(s)	108, 929
RsaNI	GTAC	2 cut(s)	107, 928
RseI	CAYNNNNRTG	2 cut(s)	314, 913
SaqAI	TTAA	3 cut(s)	276, 573, 684
SatI	GCNGC	2 cut(s)	12, 645
Sau3AI	GATC	6 cut(s)	91, 415, 419, 522, 582, 993
Sau96I	GGNCC	1 cut(s)	977
ScrFI	CCNGG	1 cut(s)	1064
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	3 cut(s)	726, 865, 927
SfcI	CTRYAG	1 cut(s)	724
SinI	GGWCC	1 cut(s)	977
SmiMI	CAYNNNNRTG	2 cut(s)	314, 913
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	269, 812, 882
SsiI	CCGC	1 cut(s)	774
SspI	AATATT	1 cut(s)	904
SspMI	CTAG	8 cut(s)	86, 423, 560, 740, 762, 860, 971, 1055
StyD4I	CCNGG	1 cut(s)	1062
StyI	CCWWGG	2 cut(s)	505, 615
TaaI	ACNGT	3 cut(s)	626, 703, 728
TaiI	ACGT	2 cut(s)	318, 801
TaqI	TCGA	2 cut(s)	418, 492
TasI	AATT	3 cut(s)	269, 812, 882
TfiI	GAWTC	5 cut(s)	153, 301, 489, 770, 937
Tru1I	TTAA	3 cut(s)	276, 573, 684
Tru9I	TTAA	3 cut(s)	276, 573, 684
TscAI	CASTG	4 cut(s)	202, 439, 799, 929
TseFI	GTSAC	2 cut(s)	794, 866
TseI	GCWGC	2 cut(s)	11, 644
Tsp45I	GTSAC	2 cut(s)	794, 866
TspDTI	ATGAA	6 cut(s)	282, 294, 384, 429, 467, 965
TspGWI	ACGGA	2 cut(s)	885, 1046
TspRI	CASTG	4 cut(s)	202, 439, 799, 929
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	977
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	723
XspI	CTAG	8 cut(s)	86, 423, 560, 740, 762, 860, 971, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.