Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001234.1

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 598

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001234.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgattgtgttccccagtattgttaaaccaattagcaaagcagccgatgatcaggtctgcccagttcaaaggtgtaggcatgatggtcctgatatcaagtttccattccgtctacaacactatccccttcactgtggccatccagagtttgaggtttcctgcagcagcttcaccaacatgaccatgatgaagctttccccatcatcaggattctttccaatacaaacaatcgattacgagagtcaacagtttcgtgtgtatgatcaggatggttgcctcccgagacgccttcttaattttactgtctcctcctcgctctttgaaccagcacttgtgagtgacgattccgtttgcggttacgattacatgaggtcgaagaccatgacgttgttaaattgtaccacggcacaaaattttagcacatccaccacacctgctgacacccccttgtggaagtacgtggcgatcaaatgtctcagtgacccagggcattatcaagttctggctactactgagcattttacaatgtctgacttgccaatagactcttgctctactttgtcagaactctttcttccagttcgacatataaagggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

199

Amino Acids

22.45

Weight (kDa)

5.93

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	2 cut(s)	400, 458
AfiI	CCNNNNNNNGG	2 cut(s)	206, 450
AgsI	TTSAA	2 cut(s)	68, 323
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	2 cut(s)	168, 193
AluI	AGCT	2 cut(s)	168, 193
Alw26I	GTCTC	3 cut(s)	277, 310, 479
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	41, 162, 165
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	570
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	3 cut(s)	53, 174, 177
BccI	CCATC	4 cut(s)	77, 147, 208, 263
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	2 cut(s)	49, 262
BcoDI	GTCTC	3 cut(s)	277, 310, 479
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	3 cut(s)	42, 163, 166
BlsI	GCNGC	3 cut(s)	43, 164, 167
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	2 cut(s)	9, 56
BmuI	ACTGGG	2 cut(s)	9, 56
BpiI	GAAGAC	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	402, 484, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 450
Bse1I	ACTGG	3 cut(s)	15, 62, 578
BseBI	CCWGG	1 cut(s)	486
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	402, 484, 485
BseGI	GGATG	3 cut(s)	139, 274, 422
BseLI	CCNNNNNNNGG	2 cut(s)	206, 450
BseMII	CTCAG	2 cut(s)	490, 504
BseNI	ACTGG	3 cut(s)	15, 62, 578
BseRI	GAGGAG	2 cut(s)	298, 301
BseXI	GCAGC	3 cut(s)	53, 174, 177
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	206, 450
BsmAI	GTCTC	3 cut(s)	277, 310, 479
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	49, 262, 465
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	489, 505
BspDI	ATCGAT	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	442
BsrI	ACTGG	3 cut(s)	15, 62, 578
BssECI	CCNNGG	3 cut(s)	402, 484, 485
BssMI	GATC	3 cut(s)	49, 262, 465
BssNI	GRCGYC	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	3 cut(s)	134, 249, 304
BstACI	GRCGYC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	476, 513
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	139, 274, 422
BstKTI	GATC	3 cut(s)	52, 265, 468
BstMAI	GTCTC	3 cut(s)	277, 310, 479
BstMBI	GATC	3 cut(s)	49, 262, 465
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	53, 174, 177
BstV2I	GAAGAC	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	139, 274, 422
BtsIMutI	CAGTG	2 cut(s)	130, 484
BveI	ACCTGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	399, 457
CviAII	CATG	5 cut(s)	80, 178, 184, 367, 382
CviJI	RGCY	5 cut(s)	44, 138, 168, 193, 506
CviKI_1	RGCY	5 cut(s)	44, 138, 168, 193, 506
CviQI	GTAC	2 cut(s)	399, 457
DdeI	CTNAG	2 cut(s)	476, 513
DpnI	GATC	3 cut(s)	51, 264, 467
DpnII	GATC	3 cut(s)	49, 262, 465
EaeI	YGGCCR	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	5 cut(s)	83, 181, 187, 370, 385
FaiI	YATR	8 cut(s)	81, 179, 185, 261, 368, 383, 588, 590
FatI	CATG	5 cut(s)	79, 177, 183, 366, 381
FbaI	TGATCA	2 cut(s)	49, 262
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	42, 163, 166
FokI	GGATG	3 cut(s)	126, 281, 409
Fsp4HI	GCNGC	3 cut(s)	42, 163, 166
GluI	GCNGC	3 cut(s)	42, 163, 166
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	5 cut(s)	83, 181, 187, 370, 385
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	4 cut(s)	210, 241, 344, 545
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	113, 245
Hpy188I	TCNGA	2 cut(s)	532, 565
Hpy188III	TCNNGA	5 cut(s)	89, 143, 207, 266, 280
Hpy8I	GTNNAC	2 cut(s)	113, 245
HpyAV	CCTTC	2 cut(s)	137, 299
HpyCH4III	ACNGT	3 cut(s)	134, 249, 304
HpyCH4IV	ACGT	2 cut(s)	386, 459
HpyCH4V	TGCA	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	476, 513
HpySE526I	ACGT	2 cut(s)	386, 459
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	5 cut(s)	83, 181, 187, 370, 385
Ksp22I	TGATCA	2 cut(s)	49, 262
Kzo9I	GATC	3 cut(s)	49, 262, 465
Lsp1109I	GCAGC	3 cut(s)	53, 174, 177
MaeII	ACGT	2 cut(s)	386, 459
MaeIII	GTNAC	3 cut(s)	338, 356, 479
MalI	GATC	3 cut(s)	51, 264, 467
MboI	GATC	3 cut(s)	49, 262, 465
MboII	GAAGA	2 cut(s)	388, 566
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	4 cut(s)	30, 295, 394, 412
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	250, 539
MnlI	CCTC	5 cut(s)	145, 287, 319, 322, 363
Mox20I	TGGCCA	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	3 cut(s)	24, 294, 392
MslI	CAYNNNNRTG	2 cut(s)	176, 182
Msp20I	TGGCCA	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
NdeII	GATC	3 cut(s)	49, 262, 465
NlaIII	CATG	5 cut(s)	83, 181, 187, 370, 385
NmuCI	GTSAC	2 cut(s)	338, 479
PaqCI	CACCTGC	1 cut(s)	442
PasI	CCCWGGG	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	210, 344
PkrI	GCNGC	3 cut(s)	43, 164, 167
PleI	GAGTC	2 cut(s)	249, 539
PpsI	GAGTC	2 cut(s)	249, 539
Ppu21I	YACGTR	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	400, 458
RsaNI	GTAC	2 cut(s)	399, 457
RseI	CAYNNNNRTG	2 cut(s)	176, 182
SaqAI	TTAA	3 cut(s)	24, 294, 392
SatI	GCNGC	3 cut(s)	42, 163, 166
Sau3AI	GATC	3 cut(s)	49, 262, 465
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	250, 539
ScrFI	CCNGG	1 cut(s)	486
SetI	ASST	9 cut(s)	57, 74, 156, 170, 195, 374, 389, 436, 462
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	176, 182
Sse9I	AATT	4 cut(s)	30, 295, 394, 412
SsiI	CCGC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	134, 249, 304
TaiI	ACGT	2 cut(s)	389, 462
TaqI	TCGA	3 cut(s)	231, 374, 583
TasI	AATT	4 cut(s)	30, 295, 394, 412
TfiI	GAWTC	2 cut(s)	210, 344
Tru1I	TTAA	3 cut(s)	24, 294, 392
Tru9I	TTAA	3 cut(s)	24, 294, 392
TscAI	CASTG	2 cut(s)	137, 484
TseFI	GTSAC	2 cut(s)	338, 479
TseI	GCWGC	3 cut(s)	41, 162, 165
Tsp45I	GTSAC	2 cut(s)	338, 479
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	2 cut(s)	98, 337
TspRI	CASTG	2 cut(s)	137, 484
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.