Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Reverse (-)

1055418 .. 1057180

Gene Structure 1763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTGCGTTGCAAAGAACATAACTCAAAAATTTCTAATGAACTCAGGTACTAGGTCAATTGCCATAGGGGTGACCACAGGTTGCTTTCTTCTCGTATCCACAGCGGTAGTAGCCATCTTCTACTACATGAGACAAACAAACAGAACAGAGCAAAAGGAAAATCAACAAAAGATTGAAAAGTTCCTAGATGATCACAAGTCCCATGGTGAAGGAGGTTTTGGAAGTGTTTTCAGTGGAAAGCTTCCCAGTAATGGAGTTTTGGTCGCAGTAAAAGTCCTCAAGGATTCTAAAGGAAATGGAGATGATTTTGTTAATGAAGTGGGAACCATTGGCAGAATTCATCATGTCAATGTGGTTCGCCTACTTGGCTTTTCTGCTGAAGGAGGGAAGCGTGCTCTTATTTATGAGCTCATGCCAAACAGCTCCCTAGAGAAGTTTATATCTTCTGCACGATCCAACGATACTCCATTTGATTGGGAGAAACTTCGCAACATCATCATCGGTATAGCAAAGGGAATTGAGTATCTACACCAAGGGTGCGACCAAAGGATCCTCCATTTTGATATCAAGCCTCATAATATCTTGTTAGACCATGACTTCAATCCAAAAATCTCGGATTTTGGTCTCGCTAAACTCTTCTCCAAGGAAGAGAGTATGATATCTATGACTGCTGCAAGAGGCACTGTAGGCTACATTGCCCCAGAAGTGTTCAATGGCTACTTTGGAACCGTCTCCTACAAATCGGATGCATGGGCGGATCCAATGCTTGAAATCATTGGAGCTAGAAAGGAATCTGCTCTTACATCTAACAACAGCCAGATGTATTTTCCTGAATTGATCTATGAGTGTCTAAATCAAGGGGAGAAACTGGATTTAGAGCTAGGTGACGATGGAGATGCTCAGACTGCTAAGCGACTAGCGATTGTTGCACTTTGGTGTGTATTCAGTGGTACCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

319

Amino Acids

35.32

Weight (kDa)

6.26

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	66 - 252	5.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 252	3.6e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	950
AccB1I	GGYRCC	1 cut(s)	950
AciI	CCGC	2 cut(s)	104, 755
AclWI	GGATC	5 cut(s)	447, 544, 557, 752, 765
AcsI	RAATTY	2 cut(s)	29, 336
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	49, 952
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	4 cut(s)	176, 601, 712, 770
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AleI	CACNNNNGTG	1 cut(s)	934
AluBI	AGCT	5 cut(s)	241, 409, 423, 782, 880
AluI	AGCT	5 cut(s)	241, 409, 423, 782, 880
Alw21I	GWGCWC	2 cut(s)	397, 411
Alw26I	GTCTC	3 cut(s)	124, 629, 736
AlwI	GGATC	5 cut(s)	447, 544, 557, 752, 765
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	2 cut(s)	29, 336
Asp718I	GGTACC	1 cut(s)	950
AsuHPI	GGTGA	3 cut(s)	82, 218, 896
BamHI	GGATCC	2 cut(s)	549, 757
BanI	GGYRCC	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	397, 411
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	2 cut(s)	122, 884
BcgI	CGANNNNNNTGC	2 cut(s)	878, 912
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	124, 629, 736
BfaI	CTAG	6 cut(s)	51, 185, 428, 783, 881, 917
BfmI	CTRYAG	1 cut(s)	684
BfuI	GTATCC	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	366
BisI	GCNGC	1 cut(s)	672
BlpI	GCTNAGC	1 cut(s)	909
BlsI	GCNGC	1 cut(s)	673
BmiI	GGNNCC	5 cut(s)	325, 551, 727, 759, 952
BmrI	ACTGGG	2 cut(s)	240, 949
BmsI	GCATC	2 cut(s)	736, 886
BmuI	ACTGGG	2 cut(s)	240, 949
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	202, 532, 642
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	3 cut(s)	246, 873, 955
Bse3DI	GCAATG	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	202, 532, 642
BseGI	GGATG	1 cut(s)	751
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	57, 914
BseNI	ACTGG	3 cut(s)	246, 873, 955
BseXI	GCAGC	1 cut(s)	658
BsgI	GTGCAG	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	950
BsiHKAI	GWGCWC	2 cut(s)	397, 411
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	3 cut(s)	124, 629, 736
BsmBI	CGTCTC	1 cut(s)	736
BsmFI	GGGAC	1 cut(s)	184
Bso31I	GGTCTC	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	397, 411
Bsp143I	GATC	5 cut(s)	190, 452, 549, 757, 837
Bsp1720I	GCTNAGC	1 cut(s)	909
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	2 cut(s)	104, 755
BspCNI	CTCAG	2 cut(s)	56, 913
BspLI	GGNNCC	5 cut(s)	325, 551, 727, 759, 952
BspPI	GGATC	5 cut(s)	447, 544, 557, 752, 765
BspT107I	GGYRCC	1 cut(s)	950
BspTNI	GGTCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	3 cut(s)	246, 873, 955
BssECI	CCNNGG	3 cut(s)	202, 532, 642
BssMI	GATC	5 cut(s)	190, 452, 549, 757, 837
BssT1I	CCWWGG	3 cut(s)	202, 532, 642
Bst4CI	ACNGT	2 cut(s)	685, 730
Bst6I	CTCTTC	2 cut(s)	641, 642
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	43, 900, 909
BstDSI	CCRYGG	1 cut(s)	202
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	751
BstKTI	GATC	5 cut(s)	193, 455, 552, 760, 840
BstMAI	GTCTC	3 cut(s)	124, 629, 736
BstMBI	GATC	5 cut(s)	190, 452, 549, 757, 837
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 366, 687, 905, 926
BstPI	GGTNACC	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	658
BstX2I	RGATCY	2 cut(s)	549, 757
BstXI	CCANNNNNNTGG	1 cut(s)	474
BstYI	RGATCY	2 cut(s)	549, 757
BsuI	GTATCC	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	3 cut(s)	238, 681, 952
Cac8I	GCNNGC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	48, 951
CviAII	CATG	6 cut(s)	127, 203, 344, 412, 593, 750
CviQI	GTAC	2 cut(s)	48, 951
DdeI	CTNAG	3 cut(s)	43, 900, 909
DpnI	GATC	5 cut(s)	192, 454, 551, 759, 839
DpnII	GATC	5 cut(s)	190, 452, 549, 757, 837
Eam1104I	CTCTTC	2 cut(s)	641, 642
EarI	CTCTTC	2 cut(s)	641, 642
EciI	GGCGGA	1 cut(s)	770
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	3 cut(s)	202, 532, 642
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	629
Eco32I	GATATC	2 cut(s)	565, 660
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	409
EcoO65I	GGTNACC	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	336
EcoRV	GATATC	2 cut(s)	565, 660
EcoT14I	CCWWGG	3 cut(s)	202, 532, 642
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	3 cut(s)	202, 532, 642
Esp3I	CGTCTC	1 cut(s)	736
FaeI	CATG	6 cut(s)	130, 206, 347, 415, 596, 753
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	6 cut(s)	126, 202, 343, 411, 592, 749
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	6 cut(s)	51, 185, 428, 783, 881, 917
GluI	GCNGC	1 cut(s)	672
Hin1II	CATG	6 cut(s)	130, 206, 347, 415, 596, 753
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	284, 791
HphI	GGTGA	3 cut(s)	82, 218, 896
Hpy188I	TCNGA	3 cut(s)	616, 745, 903
Hpy188III	TCNNGA	1 cut(s)	830
HpyAV	CCTTC	2 cut(s)	203, 374
HpyCH4III	ACNGT	2 cut(s)	685, 730
HpyCH4V	TGCA	5 cut(s)	11, 449, 674, 749, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 366, 687, 905, 926
HpyF3I	CTNAG	3 cut(s)	43, 900, 909
Hsp92II	CATG	6 cut(s)	130, 206, 347, 415, 596, 753
KpnI	GGTACC	1 cut(s)	954
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	190, 452, 549, 757, 837
LmnI	GCTCC	2 cut(s)	428, 779
LpnPI	CCDG	7 cut(s)	30, 63, 259, 714, 830, 843, 854
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	2 cut(s)	736, 886
MaeI	CTAG	6 cut(s)	51, 185, 428, 783, 881, 917
MaeIII	GTNAC	2 cut(s)	70, 884
MalI	GATC	5 cut(s)	192, 454, 551, 759, 839
MboI	GATC	5 cut(s)	190, 452, 549, 757, 837
MboII	GAAGA	5 cut(s)	80, 109, 435, 628, 659
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	2 cut(s)	549, 757
MhlI	GDGCHC	2 cut(s)	397, 411
MluCI	AATT	5 cut(s)	29, 57, 336, 516, 833
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	6 cut(s)	206, 287, 377, 563, 582, 671
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	3 cut(s)	68, 348, 934
MspA1I	CMGCKG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	110, 366, 687, 905, 926
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	5 cut(s)	190, 452, 549, 757, 837
NlaIII	CATG	6 cut(s)	130, 206, 347, 415, 596, 753
NlaIV	GGNNCC	5 cut(s)	325, 551, 727, 759, 952
NmuCI	GTSAC	2 cut(s)	70, 884
NsiI	ATGCAT	1 cut(s)	751
OliI	CACNNNNGTG	1 cut(s)	934
PfeI	GAWTC	2 cut(s)	284, 791
PkrI	GCNGC	1 cut(s)	673
Psp124BI	GAGCTC	1 cut(s)	411
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	5 cut(s)	325, 551, 727, 759, 952
PsuI	RGATCY	2 cut(s)	549, 757
RsaI	GTAC	2 cut(s)	49, 952
RsaNI	GTAC	2 cut(s)	48, 951
RseI	CAYNNNNRTG	3 cut(s)	68, 348, 934
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	5 cut(s)	190, 452, 549, 757, 837
SduI	GDGCHC	2 cut(s)	397, 411
SfaNI	GCATC	2 cut(s)	736, 886
SfcI	CTRYAG	1 cut(s)	684
SmiMI	CAYNNNNRTG	3 cut(s)	68, 348, 934
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	5 cut(s)	29, 57, 336, 516, 833
SsiI	CCGC	2 cut(s)	104, 755
SspMI	CTAG	6 cut(s)	51, 185, 428, 783, 881, 917
SstI	GAGCTC	1 cut(s)	411
StyI	CCWWGG	3 cut(s)	202, 532, 642
TaaI	ACNGT	2 cut(s)	685, 730
TasI	AATT	5 cut(s)	29, 57, 336, 516, 833
TfiI	GAWTC	2 cut(s)	284, 791
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	3 cut(s)	238, 688, 952
TseFI	GTSAC	2 cut(s)	70, 884
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	2 cut(s)	70, 884
TspDTI	ATGAA	3 cut(s)	53, 329, 330
TspRI	CASTG	3 cut(s)	238, 688, 952
XapI	RAATTY	2 cut(s)	29, 336
XspI	CTAG	6 cut(s)	51, 185, 428, 783, 881, 917
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.