Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032682.1

Orthogroup ID

OG0000953

Physical Location & Seq

Genomic Coordinates Forward (+)

329 .. 736

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032682.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggagcctctgcttttcttgcttatgattgtgttccccagtattgttaaaccaattagcaaagcagccgatgatcaggtctgcccagttcaaaggtgtaggcatgatggtcctgatatcaagtttccattccgtctacaacactatccccttcactgtggccatccagagtttgaggtttcctgcagcagcttcaccaacatgaccatgatgaagctttcctcatcatcaggattctttccaatacaaacaatcgattacgagagtcaacagtttcgtgtgtatgatgaggatggttgcctcccgagacgccttctcaattttactgtctcctcctcgctctttgaaccagcaattgtgagtgaagaccatgacgttgttaaattgtaccacggcacaaaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

135

Amino Acids

15.51

Weight (kDa)

5.8

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01480 FvH4_6g01500 FvH4_6g01501
malus_domestica	MD04G1233200.v1.1 MD12G1250800.v1.1 MD12G1251200.v1.1
prunus_persica	Prupe.6G352900_v2.0.a1 Prupe.6G352900_v2.0.a1
pyrus_communis	pycom04g20660 pycom04g20720 pycom12g23110
rosa_chinensis	RchiOBHm_Chr3g0449111 RchiOBHm_Chr3g0449121 RchiOBHm_Chr3g0449341 RchiOBHm_Chr3g0449371 RchiOBHm_Chr3g0449391 RchiOBHm_Chr7g0209911
rosa_laevigata	RLG00000025835 RLG00000025837 RLG00000025851 RLG00000025852
rosa_multiflora	Rmu_sc0001234.1_g000001 Rmu_sc0001234.1_g000005 Rmu_sc0001234.1_g000007 Rmu_sc0001234.1_g000011 Rmu_sc0003776.1_g000032 Rmu_sc0004874.1_g000012 Rmu_sc0004874.1_g000015 Rmu_sc0006661.1_g000002 Rmu_sc0006661.1_g000003 Rmu_sc0006661.1_g000005 Rmu_sc0017357.1_g000001 Rmu_sc0028145.1_g000001 Rmu_sc0032682.1_g000001 Rmu_ssc0000423.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248810 Rroxscaffold_6G00427210 Rroxscaffold_6G00427350
rosa_rugosa	Rorug02G0618000 Rorug02G0618300 Rorug02G0618400.1 Rorug02G0619900 Rorug02G0620300 Rorug06G0099800 Rorug06G0099800 Rorug07G0117300
rosa_samantha	Rh3AG017800 Rh3AG018000 Rh3BG016800 Rh3BG018100 Rh3BG018300 Rh3CG015900 Rh3CG017000 Rh3CG017200 Rh3DG017100 Rh3DG018300 Rh3DG018700 Rh7BG245800
rosa_wichuraiana	Rw3G001250 Rw3G001380 Rw3G001410 Rw3G001420 Rw3G001440 Rw7G021310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	92, 347
AluBI	AGCT	2 cut(s)	192, 217
AluI	AGCT	2 cut(s)	192, 217
Alw26I	GTCTC	2 cut(s)	301, 334
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	3 cut(s)	65, 186, 189
ApoI	RAATTY	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	77, 198, 201
BccI	CCATC	3 cut(s)	101, 171, 287
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	301, 334
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	3 cut(s)	66, 187, 190
BlsI	GCNGC	3 cut(s)	67, 188, 191
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	2 cut(s)	33, 80
BmuI	ACTGGG	2 cut(s)	33, 80
BpiI	GAAGAC	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	39, 86
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	163, 298
BseNI	ACTGG	2 cut(s)	39, 86
BseRI	GAGGAG	2 cut(s)	322, 325
BseXI	GCAGC	3 cut(s)	77, 198, 201
BshFI	GGCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	301, 334
BsmBI	CGTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	39, 86
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	1 cut(s)	73
BssNI	GRCGYC	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	158, 273, 328
BstACI	GRCGYC	1 cut(s)	310
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	2 cut(s)	163, 298
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	301, 334
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	77, 198, 201
BstV2I	GAAGAC	1 cut(s)	372
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	163, 298
BtsIMutI	CAGTG	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	110
ClaI	ATCGAT	1 cut(s)	255
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	104, 202, 208, 371
CviJI	RGCY	5 cut(s)	7, 68, 162, 192, 217
CviKI_1	RGCY	5 cut(s)	7, 68, 162, 192, 217
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	107, 205, 211, 374
FaiI	YATR	6 cut(s)	26, 105, 203, 209, 285, 372
FatI	CATG	4 cut(s)	103, 201, 207, 370
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	66, 187, 190
FokI	GGATG	2 cut(s)	150, 305
Fsp4HI	GCNGC	3 cut(s)	66, 187, 190
GluI	GCNGC	3 cut(s)	66, 187, 190
HaeIII	GGCC	1 cut(s)	162
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	4 cut(s)	107, 205, 211, 374
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	2 cut(s)	234, 265
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	137, 269
Hpy188III	TCNNGA	4 cut(s)	113, 167, 231, 304
Hpy8I	GTNNAC	2 cut(s)	137, 269
HpyAV	CCTTC	2 cut(s)	161, 323
HpyCH4III	ACNGT	3 cut(s)	158, 273, 328
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	4 cut(s)	107, 205, 211, 374
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	52, 62, 99, 126, 180, 196, 216, 363
Lsp1109I	GCAGC	3 cut(s)	77, 198, 201
MaeII	ACGT	1 cut(s)	375
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	377
MfeI	CAATTG	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	5 cut(s)	54, 319, 354, 383, 401
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	7 cut(s)	18, 169, 232, 283, 311, 343, 346
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	48, 381
MslI	CAYNNNNRTG	2 cut(s)	200, 206
Msp20I	TGGCCA	1 cut(s)	162
MunI	CAATTG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	4 cut(s)	107, 205, 211, 374
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	67, 188, 191
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	200, 206
SaqAI	TTAA	2 cut(s)	48, 381
SatI	GCNGC	3 cut(s)	66, 187, 190
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	274
SetI	ASST	6 cut(s)	81, 98, 180, 194, 219, 378
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	200, 206
Sse9I	AATT	5 cut(s)	54, 319, 354, 383, 401
TaaI	ACNGT	3 cut(s)	158, 273, 328
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	255
TasI	AATT	5 cut(s)	54, 319, 354, 383, 401
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	48, 381
Tru9I	TTAA	2 cut(s)	48, 381
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	3 cut(s)	65, 186, 189
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.