FvH4_6g50400

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000534
Physical Location & Seq
Reverse (-)
37515817 .. 37517524
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50400.t1

Sequence Viewer

Length: 1071 bp
ATGGCAGTCGAATCTCGTATATGGGGTGCAGTGCCTTTTGCTGCCATGGTGTTGGTCGAGATTGCAGAAATTGGAGTATCAACGATTAGTAAAGCAGCCATGTCAAAAGGGATGAGCCATTTTGTTTTCATTGTTTACTATAATGCACTCGGTACTCTCCTGCTCTTCCCCTATTTCATCTTCCAAAGAAACAAGAGAGCTCCTTTGAGTTTCAAACTCATATATAGATTCTTCCTGCTTGGCTTAATAGGGAGTTCAGGGAAAATTTTGTTCTTTGCTGGTGTCAAATACAGCTCACCTACTCTTTCAGCAGCACTGGCAAATCTTACCCCCATCTTCACTTTCTTGCTTGCCGTAATTTTCAGGATGGAAAAGCTCAATTTAAGGCAAACAAGTGGTCAGGCCAAATCTTTGGGCACCATTATATCGGTTGGTGGGGCATTGATAGTGACCTTCTACAAGGGCCCTGCTGTTTTGATGGCTTCCTTAAAACATGCTGGCTTCAAAAACCAGCATATACATTCACAGCACTCAGCGTGGGTCTTCGGAGGTCTTTTACTTGCAATTCAATGTGTTGTCTCTTCATCATGGAATATTGCTCAGGCAGCTACTGTCAAGGATTATCCAGAAAAAATGACCATAGTCTTCTTCTACACCCTCTTTTTGACAATTCAATGCTCAGTTATTTCACTATTTGTGGAATGGAAGAATCCAAGTGCATGGAAATTGGAACCTGGAATTGAGATGGTTGCCATTGTCTATGCGGCTATCTTTGTGAGTGTGTTCCGCATTGGTGTTCATGTTTGGTGCTTGCATAAGAAGGGACCTGTTTATGTAGCCATGTTCAAGCCACTGGGAATTGCTATTGCAGTGGCAATGGTTGTTATTTTCCTTGGTGATACTCTTTATCTTGGAAGCGTGATTGGATCTGTTGTAATTTCTCTTGGATTTTACACGGTGATATGGGCACAAATAAAAGAAAAGAAGGCGGTGCCTGATAATGAAATTCAAAGATCAGAATCATCCATCCAAAGGGCTCCTCTTTTGCCAAGCAATGTAACCGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

357

Amino Acids

39.14

Weight (kDa)

9.72

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 27 - 151 4e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 416, 991
AciI CCGC 3 cut(s) 764, 787, 989
AclWI GGATC 1 cut(s) 934
AcsI RAATTY 2 cut(s) 264, 1005
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 1032
AgsI TTSAA 6 cut(s) 214, 505, 569, 674, 847, 1010
AjnI CCWGG 1 cut(s) 733
AluBI AGCT 4 cut(s) 200, 294, 376, 608
AluI AGCT 4 cut(s) 200, 294, 376, 608
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 583
AlwI GGATC 1 cut(s) 934
AlwNI CAGNNNCTG 1 cut(s) 611
AoxI GGCC 2 cut(s) 402, 463
ApaI GGGCCC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 41, 95, 311, 605
ApoI RAATTY 2 cut(s) 264, 1005
ArsI GACNNNNNNTTYG 2 cut(s) 382, 414
AspS9I GGNCC 3 cut(s) 463, 464, 824
AsuHPI GGTGA 3 cut(s) 288, 908, 970
AvaII GGWCC 1 cut(s) 824
BaeGI GKGCMC 3 cut(s) 419, 467, 970
BanI GGYRCC 2 cut(s) 416, 991
BanII GRGCYC 3 cut(s) 202, 467, 1039
BbsI GAAGAC 2 cut(s) 535, 637
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 4 cut(s) 28, 107, 323, 617
BccI CCATC 5 cut(s) 341, 361, 472, 739, 1034
BceAI ACGGC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 735
BcoDI GTCTC 1 cut(s) 583
BisI GCNGC 5 cut(s) 42, 96, 312, 606, 765
BlsI GCNGC 5 cut(s) 43, 97, 313, 607, 766
Bme1390I CCNGG 1 cut(s) 735
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 3 cut(s) 463, 464, 824
BmiI GGNNCC 6 cut(s) 418, 465, 732, 825, 993, 1038
BmrFI CCNGG 1 cut(s) 735
BmrI ACTGGG 1 cut(s) 863
BmuI ACTGGG 1 cut(s) 863
BoxI GACNNNNGTC 1 cut(s) 641
BpiI GAAGAC 2 cut(s) 535, 637
Bpu10I CCTNAGC 1 cut(s) 600
BsaBI GATNNNNATC 1 cut(s) 1018
BsaJI CCNNGG 2 cut(s) 45, 892
Bsc4I CCNNNNNNNGG 1 cut(s) 1032
Bse1I ACTGG 2 cut(s) 321, 858
Bse3DI GCAATG 2 cut(s) 882, 1060
Bse8I GATNNNNATC 1 cut(s) 1018
BseBI CCWGG 1 cut(s) 735
BseDI CCNNGG 2 cut(s) 45, 892
BseGI GGATG 4 cut(s) 117, 372, 1022, 1026
BseJI GATNNNNATC 1 cut(s) 1018
BseLI CCNNNNNNNGG 1 cut(s) 1032
BseMI GCAATG 2 cut(s) 882, 1060
BseMII CTCAG 3 cut(s) 546, 614, 693
BseNI ACTGG 2 cut(s) 321, 858
BseRI GAGGAG 1 cut(s) 1029
BseSI GKGCMC 3 cut(s) 419, 467, 970
BseXI GCAGC 4 cut(s) 28, 107, 323, 617
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 2 cut(s) 404, 465
BshNI GGYRCC 2 cut(s) 416, 991
BsiHKAI GWGCWC 1 cut(s) 202
BslFI GGGAC 1 cut(s) 837
BslI CCNNNNNNNGG 1 cut(s) 1032
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 837
BsnI GGCC 2 cut(s) 404, 465
Bsp120I GGGCCC 1 cut(s) 463
Bsp1286I GDGCHC 5 cut(s) 202, 419, 467, 970, 1039
Bsp143I GATC 2 cut(s) 926, 1013
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 3 cut(s) 764, 787, 989
BspANI GGCC 2 cut(s) 404, 465
BspCNI CTCAG 3 cut(s) 545, 613, 692
BspLI GGNNCC 6 cut(s) 418, 465, 732, 825, 993, 1038
BspPI GGATC 1 cut(s) 934
BspQI GCTCTTC 1 cut(s) 170
BspT107I GGYRCC 2 cut(s) 416, 991
BsrDI GCAATG 2 cut(s) 882, 1060
BsrI ACTGG 2 cut(s) 321, 858
BssECI CCNNGG 2 cut(s) 45, 892
BssMI GATC 2 cut(s) 926, 1013
BssT1I CCWWGG 2 cut(s) 45, 892
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 2 cut(s) 613, 958
Bst6I CTCTTC 2 cut(s) 170, 586
BstC8I GCNNGC 3 cut(s) 351, 499, 812
BstDEI CTNAG 3 cut(s) 532, 600, 679
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 4 cut(s) 117, 372, 1022, 1026
BstKTI GATC 2 cut(s) 929, 1016
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 2 cut(s) 926, 1013
BstMWI GCNNNNNNNGC 2 cut(s) 317, 605
BstNI CCWGG 1 cut(s) 735
BstNSI RCATGY 1 cut(s) 497
BstPAI GACNNNNGTC 1 cut(s) 641
BstSCI CCNGG 1 cut(s) 733
BstSLI GKGCMC 3 cut(s) 419, 467, 970
BstV1I GCAGC 4 cut(s) 28, 107, 323, 617
BstV2I GAAGAC 2 cut(s) 535, 637
BstX2I RGATCY 1 cut(s) 926
BstXI CCANNNNNNTGG 3 cut(s) 52, 412, 720
BstYI RGATCY 1 cut(s) 926
BsuRI GGCC 2 cut(s) 404, 465
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 4 cut(s) 117, 372, 1022, 1026
BtsI GCAGTG 2 cut(s) 36, 876
BtsIMutI CAGTG 4 cut(s) 36, 314, 851, 876
Cac8I GCNNGC 3 cut(s) 351, 499, 812
CaiI CAGNNNCTG 1 cut(s) 611
Cfr13I GGNCC 3 cut(s) 463, 464, 824
Csp6I GTAC 1 cut(s) 153
CviAII CATG 7 cut(s) 46, 100, 494, 588, 720, 800, 841
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 532, 600, 679
DpnI GATC 2 cut(s) 928, 1015
DpnII GATC 2 cut(s) 926, 1013
Eam1104I CTCTTC 2 cut(s) 170, 586
EarI CTCTTC 2 cut(s) 170, 586
Ecl136II GAGCTC 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 45, 892
Eco24I GRGCYC 3 cut(s) 202, 467, 1039
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 200
EcoO109I RGGNCCY 3 cut(s) 463, 464, 824
EcoRII CCWGG 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 45, 892
EcoT38I GRGCYC 3 cut(s) 202, 467, 1039
ErhI CCWWGG 2 cut(s) 45, 892
FaeI CATG 7 cut(s) 49, 103, 497, 591, 723, 803, 844
FaqI GGGAC 1 cut(s) 837
FatI CATG 7 cut(s) 45, 99, 493, 587, 719, 799, 840
Fnu4HI GCNGC 5 cut(s) 42, 96, 312, 606, 765
FokI GGATG 4 cut(s) 124, 379, 1009, 1013
FriOI GRGCYC 3 cut(s) 202, 467, 1039
Fsp4HI GCNGC 5 cut(s) 42, 96, 312, 606, 765
GluI GCNGC 5 cut(s) 42, 96, 312, 606, 765
HaeIII GGCC 2 cut(s) 404, 465
Hin1II CATG 7 cut(s) 49, 103, 497, 591, 723, 803, 844
HinfI GANTC 4 cut(s) 11, 228, 709, 1019
HphI GGTGA 3 cut(s) 288, 908, 970
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 548, 1018
Hpy188III TCNNGA 3 cut(s) 58, 364, 626
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 3 cut(s) 463, 814, 979
HpyCH4III ACNGT 2 cut(s) 613, 958
HpyCH4V TGCA 7 cut(s) 29, 65, 146, 563, 719, 814, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 605
HpyF3I CTNAG 3 cut(s) 532, 600, 679
Hsp92II CATG 7 cut(s) 49, 103, 497, 591, 723, 803, 844
Kzo9I GATC 2 cut(s) 926, 1013
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 205, 1042
Lsp1109I GCAGC 4 cut(s) 28, 107, 323, 617
MaeIII GTNAC 2 cut(s) 448, 1057
MalI GATC 2 cut(s) 928, 1015
MboI GATC 2 cut(s) 926, 1013
MboII GAAGA 9 cut(s) 157, 172, 223, 328, 535, 573, 637, 640, 718
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 5 cut(s) 202, 419, 467, 970, 1039
MnlI CCTC 3 cut(s) 542, 668, 1050
MseI TTAA 3 cut(s) 245, 383, 488
MspR9I CCNGG 1 cut(s) 735
MvaI CCWGG 1 cut(s) 735
MwoI GCNNNNNNNGC 2 cut(s) 317, 605
NcoI CCATGG 1 cut(s) 45
NdeII GATC 2 cut(s) 926, 1013
NlaIII CATG 7 cut(s) 49, 103, 497, 591, 723, 803, 844
NlaIV GGNNCC 6 cut(s) 418, 465, 732, 825, 993, 1038
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 170
PfeI GAWTC 4 cut(s) 11, 228, 709, 1019
PkrI GCNGC 5 cut(s) 43, 97, 313, 607, 766
PpuMI RGGWCCY 1 cut(s) 824
PshAI GACNNNNGTC 1 cut(s) 641
Psp124BI GAGCTC 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 733
PspGI CCWGG 1 cut(s) 733
PspN4I GGNNCC 6 cut(s) 418, 465, 732, 825, 993, 1038
PspOMI GGGCCC 1 cut(s) 463
PspPI GGNCC 3 cut(s) 463, 464, 824
PspPPI RGGWCCY 1 cut(s) 824
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 926
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacI GAGCTC 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 245, 383, 488
SatI GCNGC 5 cut(s) 42, 96, 312, 606, 765
Sau3AI GATC 2 cut(s) 926, 1013
Sau96I GGNCC 3 cut(s) 463, 464, 824
ScrFI CCNGG 1 cut(s) 735
SduI GDGCHC 5 cut(s) 202, 419, 467, 970, 1039
SetI ASST 9 cut(s) 202, 296, 301, 378, 455, 553, 610, 736, 829
SinI GGWCC 1 cut(s) 824
SsiI CCGC 3 cut(s) 764, 787, 989
SspI AATATT 1 cut(s) 595
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 733
StyI CCWWGG 2 cut(s) 45, 892
TaaI ACNGT 2 cut(s) 613, 958
TaqI TCGA 2 cut(s) 9, 57
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 4 cut(s) 11, 228, 709, 1019
Tru1I TTAA 3 cut(s) 245, 383, 488
Tru9I TTAA 3 cut(s) 245, 383, 488
TscAI CASTG 4 cut(s) 36, 321, 858, 876
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 41, 95, 311, 605
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 5 cut(s) 118, 166, 573, 788, 1017
TspRI CASTG 4 cut(s) 36, 321, 858, 876
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 2 cut(s) 264, 1005
XceI RCATGY 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.