Rh2CG603500

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000534
Physical Location & Seq
Reverse (-)
77897165 .. 77898450
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG603500.1

Sequence Viewer

Length: 795 bp
ATGGCACTTGAATCTCGTATATGGGGCTCAGTGCCTTTTGCTGCCATGGTGTTGGTCGAGTGCGCAGAAATTGGAGTGTCAACGATAAGTAAAGCAGCCATGTCAAGAGGGATGAGCCACTTTGTTTTCATCGTTTACTATAATGCACTCGGTACCGTCCTGCTTTTCCCTTATTTCATCTTCCAAAGAAACAAGAGAGCTCCTTTGAATTGCAAACTCATTTGTAGATTCTTCCTTCTTGGCTTAATAGGGAGTTCAGGAAAAATTTTGTTCTTTGCTGGTGTCAAATACAGTTCACCTACACTTTCAGCAGCACTGGCAAATCTTACCCCCATCTTCACTTTCTTGCTTGCCGTAGCTTTCAGGATGGAAAAGCTTGATTTGAGGCAACCAAGCGGTCAAGCCAAATCCTTGGGCACCATAATATCGGTGTGTGGGGCACTGATAGTGACCTTCTACAAGGGCCCTGCTGTTTTGATGGCTTCCTTACCACATTCTGGCTTCAAAAATCATCATATACATTCAGAGCACTCAGCGTGGGTTTTCGGAGGTCTTCTACTTGCAATTCAATGTATTGTGTCTTCATCATGGAATATCGCTCAGGCAGCTACGGTCAAGGATTATCCAGAAGAAATGACCATAGTCTTCTTCTACACCCTCTTTTTGACGATTCAATGCTCAGTTATCTCACTGTTTGTGGAATGGAAAAATCCAAGTGCATGGAAATTGGAGCTCGGAATTGAGATGGTTGCCATTCTCTATGCGGTGAGAAAAATAATAAAAAATAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

264

Amino Acids

29.22

Weight (kDa)

9.55

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 25 - 151 3.9e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 2 cut(s) 152, 416
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 2 cut(s) 396, 764
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 5 cut(s) 11, 208, 505, 569, 674
AluBI AGCT 5 cut(s) 200, 359, 376, 608, 733
AluI AGCT 5 cut(s) 200, 359, 376, 608, 733
Alw21I GWGCWC 3 cut(s) 202, 531, 735
AoxI GGCC 1 cut(s) 463
ApaI GGGCCC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 41, 95, 311, 605
ApoI RAATTY 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 463, 464
AsuHPI GGTGA 2 cut(s) 288, 778
BaeGI GKGCMC 3 cut(s) 419, 442, 467
BanI GGYRCC 2 cut(s) 152, 416
BanII GRGCYC 4 cut(s) 29, 202, 467, 735
BarI GAAGNNNNNNTAC 2 cut(s) 565, 597
BbsI GAAGAC 3 cut(s) 545, 573, 637
Bbv12I GWGCWC 3 cut(s) 202, 531, 735
BbvI GCAGC 4 cut(s) 28, 107, 323, 617
BccI CCATC 4 cut(s) 341, 361, 472, 739
BceAI ACGGC 1 cut(s) 338
BisI GCNGC 4 cut(s) 42, 96, 312, 606
BlsI GCNGC 4 cut(s) 43, 97, 313, 607
BmgT120I GGNCC 2 cut(s) 463, 464
BmiI GGNNCC 3 cut(s) 154, 418, 465
BoxI GACNNNNGTC 1 cut(s) 641
BpiI GAAGAC 3 cut(s) 545, 573, 637
Bpu10I CCTNAGC 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 45, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 45, 411
BseGI GGATG 2 cut(s) 117, 372
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 4 cut(s) 42, 546, 614, 693
BseNI ACTGG 1 cut(s) 321
BseSI GKGCMC 3 cut(s) 419, 442, 467
BseXI GCAGC 4 cut(s) 28, 107, 323, 617
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 2 cut(s) 152, 416
BsiHKAI GWGCWC 3 cut(s) 202, 531, 735
BslI CCNNNNNNNGG 1 cut(s) 497
BsnI GGCC 1 cut(s) 465
Bsp120I GGGCCC 1 cut(s) 463
Bsp1286I GDGCHC 7 cut(s) 29, 202, 419, 442, 467, 531, 735
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 396, 764
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 4 cut(s) 41, 545, 613, 692
BspLI GGNNCC 3 cut(s) 154, 418, 465
BspT107I GGYRCC 2 cut(s) 152, 416
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 45, 411
BssT1I CCWWGG 2 cut(s) 45, 411
Bst4CI ACNGT 4 cut(s) 157, 293, 613, 693
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 28, 532, 600, 679
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 117, 372
BstHHI GCGC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 317, 605
BstPAI GACNNNNGTC 1 cut(s) 641
BstSLI GKGCMC 3 cut(s) 419, 442, 467
BstV1I GCAGC 4 cut(s) 28, 107, 323, 617
BstV2I GAAGAC 3 cut(s) 545, 573, 637
BstXI CCANNNNNNTGG 3 cut(s) 52, 412, 720
BsuRI GGCC 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 117, 372
BtsIMutI CAGTG 4 cut(s) 36, 314, 440, 689
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 463, 464
Csp6I GTAC 1 cut(s) 153
CviAII CATG 4 cut(s) 46, 100, 588, 720
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 28, 532, 600, 679
Ecl136II GAGCTC 2 cut(s) 200, 733
Eco130I CCWWGG 2 cut(s) 45, 411
Eco24I GRGCYC 4 cut(s) 29, 202, 467, 735
Eco53kI GAGCTC 2 cut(s) 200, 733
EcoICRI GAGCTC 2 cut(s) 200, 733
EcoO109I RGGNCCY 2 cut(s) 463, 464
EcoT14I CCWWGG 2 cut(s) 45, 411
EcoT38I GRGCYC 4 cut(s) 29, 202, 467, 735
ErhI CCWWGG 2 cut(s) 45, 411
FaeI CATG 4 cut(s) 49, 103, 591, 723
FatI CATG 4 cut(s) 45, 99, 587, 719
Fnu4HI GCNGC 4 cut(s) 42, 96, 312, 606
FokI GGATG 2 cut(s) 124, 379
FriOI GRGCYC 4 cut(s) 29, 202, 467, 735
Fsp4HI GCNGC 4 cut(s) 42, 96, 312, 606
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 42, 96, 312, 606
HaeIII GGCC 1 cut(s) 465
HhaI GCGC 1 cut(s) 65
Hin1II CATG 4 cut(s) 49, 103, 591, 723
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 3 cut(s) 11, 228, 670
HphI GGTGA 2 cut(s) 288, 778
Hpy166II GTNNAC 3 cut(s) 81, 136, 296
Hpy188I TCNGA 3 cut(s) 526, 548, 737
Hpy188III TCNNGA 4 cut(s) 105, 258, 364, 626
Hpy8I GTNNAC 3 cut(s) 81, 136, 296
HpyAV CCTTC 2 cut(s) 245, 463
HpyCH4III ACNGT 4 cut(s) 157, 293, 613, 693
HpyCH4V TGCA 4 cut(s) 146, 213, 563, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 605
HpyF3I CTNAG 4 cut(s) 28, 532, 600, 679
Hsp92II CATG 4 cut(s) 49, 103, 591, 723
HspAI GCGC 1 cut(s) 63
KpnI GGTACC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 205, 730
LpnPI CCDG 9 cut(s) 173, 243, 264, 302, 349, 480, 483, 587, 639
Lsp1109I GCAGC 4 cut(s) 28, 107, 323, 617
MaeIII GTNAC 1 cut(s) 448
MboII GAAGA 8 cut(s) 172, 223, 328, 545, 573, 637, 640, 641
MhlI GDGCHC 7 cut(s) 29, 202, 419, 442, 467, 531, 735
MluCI AATT 6 cut(s) 69, 208, 264, 564, 725, 738
MnlI CCTC 4 cut(s) 101, 378, 542, 668
MseI TTAA 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 317, 605
NcoI CCATGG 1 cut(s) 45
NlaIII CATG 4 cut(s) 49, 103, 591, 723
NlaIV GGNNCC 3 cut(s) 154, 418, 465
NmuCI GTSAC 1 cut(s) 448
NsbI TGCGCA 1 cut(s) 64
PfeI GAWTC 3 cut(s) 11, 228, 670
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 4 cut(s) 43, 97, 313, 607
PshAI GACNNNNGTC 1 cut(s) 641
Psp124BI GAGCTC 2 cut(s) 202, 735
PspN4I GGNNCC 3 cut(s) 154, 418, 465
PspOMI GGGCCC 1 cut(s) 463
PspPI GGNCC 2 cut(s) 463, 464
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacI GAGCTC 2 cut(s) 202, 735
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 4 cut(s) 42, 96, 312, 606
Sau96I GGNCC 2 cut(s) 463, 464
SduI GDGCHC 7 cut(s) 29, 202, 419, 442, 467, 531, 735
SetI ASST 8 cut(s) 202, 301, 361, 378, 455, 553, 610, 735
Sse9I AATT 6 cut(s) 69, 208, 264, 564, 725, 738
SsiI CCGC 2 cut(s) 396, 764
SstI GAGCTC 2 cut(s) 202, 735
StyI CCWWGG 2 cut(s) 45, 411
TaaI ACNGT 4 cut(s) 157, 293, 613, 693
TaqI TCGA 1 cut(s) 57
TasI AATT 6 cut(s) 69, 208, 264, 564, 725, 738
TfiI GAWTC 3 cut(s) 11, 228, 670
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 4 cut(s) 36, 321, 447, 696
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 41, 95, 311, 605
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 118, 166, 573
TspRI CASTG 4 cut(s) 36, 321, 447, 696
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.