RLG00000021981

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000534
Physical Location & Seq
Reverse (-)
79714894 .. 79716626
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021981

Sequence Viewer

Length: 975 bp
ATGGCACTTGAATCTCGTATATGGGGCTCAGTGCCTTTTGCTGCCATGGTGTTGGTCGAGTGCGCAGAAATTGGAGTATCAACGATAAGTAAAGCAGCCATGTCACGAGGGATGAGCCATTTTGTTTTCATTGTTTACTATAATGCACTCGGTACCGTCCTGCTTTTCCCTTATTTCATCTTCCAAAGAAACAAGAGAGCTCCTTTGAATTGCAAACTCATTTGTAGATTCTTCCTTCTTGGCTTAATTGGGAGTTCAGGGAAAATTTTGATGGAAAAGCTTGATTTGAGGCAACTAAGTGGTCAAGCCAAATCCTTGGGCACCATCATATCGGTGTGTGGGGCACTGATAGTGACCTTCTACAAGGGCCCTGCTGTTTTGATGGCTTCCTTGCCACATTCTGGCTTCAAAAATCAGCATATACATTCAGAGCACTCAGCGTGGGTTTTCGGAGGTCTTCTACTTGCAATTCAATGTATTGTGTCTTCATCATGGAATATCGCTCAGGCAGCTACGGTCAAGGATTATCCAGAAGAAATGACCATAGTCTTCTTCTACACCCTCTTTTTGACGATTCAATGCTCAATTATCTCACTATTTGTGGAATGGAAAAATCCAAGTGCATGGAAATTGGAGCTCGGAATTGAGATAGTTGCCATTCTCTATGCGGCGATCTTTGTGAGTGTGTTCCGCATTGGTGTTCATGTTTGGTGCTTGCACAAGAAGGGGCCTGTTTATGTAGCCATGTTCAAGCCATTGGGAATTGCTATTGCAGTGGCAATGGTTGTTATTTTCCTTGGTGATGCACTTTATCTTGGCAGTGTGATCGGATCTGTTGTAATTGCATTCGGATTTTATACGGTGATATGGGCACAAATAAAAGAAAAGAAGATGGTGCCTGATAATGAAGTGCAAAGATTAGAATCATCCATCCAAAGGGCTCCTCTTTTGCCAACCGATGTCACTGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

325

Amino Acids

35.8

Weight (kDa)

9.01

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 3 cut(s) 152, 320, 895
AccB7I CCANNNNNTGG 1 cut(s) 401
AciI CCGC 2 cut(s) 668, 691
AclWI GGATC 1 cut(s) 838
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 401, 936
AgsI TTSAA 6 cut(s) 11, 208, 409, 473, 578, 751
AluBI AGCT 4 cut(s) 200, 280, 512, 637
AluI AGCT 4 cut(s) 200, 280, 512, 637
Alw21I GWGCWC 3 cut(s) 202, 435, 639
AlwI GGATC 1 cut(s) 838
AoxI GGCC 2 cut(s) 367, 728
ApaI GGGCCC 1 cut(s) 371
ApeKI GCWGC 3 cut(s) 41, 95, 509
ApoI RAATTY 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 367, 368, 728
AsuHPI GGTGA 2 cut(s) 812, 874
BaeGI GKGCMC 4 cut(s) 323, 346, 371, 874
BanI GGYRCC 3 cut(s) 152, 320, 895
BanII GRGCYC 5 cut(s) 29, 202, 371, 639, 943
BarI GAAGNNNNNNTAC 2 cut(s) 469, 501
BauI CACGAG 1 cut(s) 105
BbsI GAAGAC 3 cut(s) 449, 477, 541
Bbv12I GWGCWC 3 cut(s) 202, 435, 639
BbvI GCAGC 3 cut(s) 28, 107, 521
BccI CCATC 5 cut(s) 265, 332, 376, 886, 938
BcgI CGANNNNNNTGC 2 cut(s) 808, 842
BisI GCNGC 4 cut(s) 42, 96, 510, 669
BlsI GCNGC 4 cut(s) 43, 97, 511, 670
BmgT120I GGNCC 3 cut(s) 367, 368, 728
BmiI GGNNCC 6 cut(s) 154, 322, 369, 729, 897, 942
BmsI GCATC 1 cut(s) 793
BoxI GACNNNNGTC 1 cut(s) 545
BpiI GAAGAC 3 cut(s) 449, 477, 541
Bpu10I CCTNAGC 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 922
BsaJI CCNNGG 3 cut(s) 45, 315, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 936
Bse3DI GCAATG 1 cut(s) 786
Bse8I GATNNNNATC 1 cut(s) 922
BseDI CCNNGG 3 cut(s) 45, 315, 796
BseGI GGATG 3 cut(s) 117, 926, 930
BseJI GATNNNNATC 1 cut(s) 922
BseLI CCNNNNNNNGG 2 cut(s) 401, 936
BseMI GCAATG 1 cut(s) 786
BseMII CTCAG 3 cut(s) 42, 450, 518
BseRI GAGGAG 1 cut(s) 933
BseSI GKGCMC 4 cut(s) 323, 346, 371, 874
BseXI GCAGC 3 cut(s) 28, 107, 521
BshFI GGCC 2 cut(s) 369, 730
BshNI GGYRCC 3 cut(s) 152, 320, 895
BsiHKAI GWGCWC 3 cut(s) 202, 435, 639
BslI CCNNNNNNNGG 2 cut(s) 401, 936
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 2 cut(s) 369, 730
Bsp120I GGGCCC 1 cut(s) 367
Bsp1286I GDGCHC 9 cut(s) 29, 202, 323, 346, 371, 435, 639, 874, 943
Bsp143I GATC 3 cut(s) 672, 825, 830
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 668, 691
BspANI GGCC 2 cut(s) 369, 730
BspCNI CTCAG 3 cut(s) 41, 449, 517
BspLI GGNNCC 6 cut(s) 154, 322, 369, 729, 897, 942
BspPI GGATC 1 cut(s) 838
BspT107I GGYRCC 3 cut(s) 152, 320, 895
BsrDI GCAATG 1 cut(s) 786
BssECI CCNNGG 3 cut(s) 45, 315, 796
BssMI GATC 3 cut(s) 672, 825, 830
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 3 cut(s) 45, 315, 796
Bst2BI CACGAG 1 cut(s) 105
Bst4CI ACNGT 3 cut(s) 157, 517, 862
BstC8I GCNNGC 1 cut(s) 716
BstDEI CTNAG 4 cut(s) 28, 296, 436, 504
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 117, 926, 930
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 675, 828, 833
BstMBI GATC 3 cut(s) 672, 825, 830
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstPAI GACNNNNGTC 1 cut(s) 545
BstSLI GKGCMC 4 cut(s) 323, 346, 371, 874
BstV1I GCAGC 3 cut(s) 28, 107, 521
BstV2I GAAGAC 3 cut(s) 449, 477, 541
BstX2I RGATCY 1 cut(s) 830
BstXI CCANNNNNNTGG 3 cut(s) 52, 316, 624
BstYI RGATCY 1 cut(s) 830
BsuRI GGCC 2 cut(s) 369, 730
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 3 cut(s) 117, 926, 930
BtsI GCAGTG 2 cut(s) 780, 826
BtsIMutI CAGTG 5 cut(s) 36, 344, 780, 826, 963
Cac8I GCNNGC 1 cut(s) 716
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 367, 368, 728
Csp6I GTAC 1 cut(s) 153
CviAII CATG 6 cut(s) 46, 100, 492, 624, 704, 745
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 28, 296, 436, 504
DpnI GATC 3 cut(s) 674, 827, 832
DpnII GATC 3 cut(s) 672, 825, 830
Ecl136II GAGCTC 2 cut(s) 200, 637
Eco130I CCWWGG 3 cut(s) 45, 315, 796
Eco24I GRGCYC 5 cut(s) 29, 202, 371, 639, 943
Eco53kI GAGCTC 2 cut(s) 200, 637
EcoICRI GAGCTC 2 cut(s) 200, 637
EcoO109I RGGNCCY 3 cut(s) 367, 368, 728
EcoT14I CCWWGG 3 cut(s) 45, 315, 796
EcoT38I GRGCYC 5 cut(s) 29, 202, 371, 639, 943
ErhI CCWWGG 3 cut(s) 45, 315, 796
FaeI CATG 6 cut(s) 49, 103, 495, 627, 707, 748
FatI CATG 6 cut(s) 45, 99, 491, 623, 703, 744
Fnu4HI GCNGC 4 cut(s) 42, 96, 510, 669
FokI GGATG 3 cut(s) 124, 913, 917
FriOI GRGCYC 5 cut(s) 29, 202, 371, 639, 943
Fsp4HI GCNGC 4 cut(s) 42, 96, 510, 669
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 42, 96, 510, 669
HaeIII GGCC 2 cut(s) 369, 730
HhaI GCGC 1 cut(s) 65
Hin1II CATG 6 cut(s) 49, 103, 495, 627, 707, 748
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 4 cut(s) 11, 228, 574, 923
HphI GGTGA 2 cut(s) 812, 874
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 5 cut(s) 430, 452, 641, 830, 851
Hpy188III TCNNGA 2 cut(s) 105, 530
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 3 cut(s) 245, 367, 718
HpyCH4III ACNGT 3 cut(s) 157, 517, 862
HpyCH4V TGCA 9 cut(s) 146, 213, 467, 623, 718, 773, 806, 845, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 4 cut(s) 28, 296, 436, 504
Hsp92II CATG 6 cut(s) 49, 103, 495, 627, 707, 748
HspAI GCGC 1 cut(s) 63
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 672, 825, 830
LmnI GCTCC 3 cut(s) 205, 634, 946
LpnPI CCDG 8 cut(s) 173, 243, 384, 387, 491, 543, 744, 912
Lsp1109I GCAGC 3 cut(s) 28, 107, 521
LweI GCATC 1 cut(s) 793
MaeIII GTNAC 3 cut(s) 102, 352, 961
MalI GATC 3 cut(s) 674, 827, 832
MboI GATC 3 cut(s) 672, 825, 830
MboII GAAGA 8 cut(s) 172, 223, 449, 477, 541, 544, 545, 901
MflI RGATCY 1 cut(s) 830
MhlI GDGCHC 9 cut(s) 29, 202, 323, 346, 371, 435, 639, 874, 943
MnlI CCTC 5 cut(s) 101, 282, 446, 572, 954
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 845
MwoI GCNNNNNNNGC 1 cut(s) 509
NcoI CCATGG 1 cut(s) 45
NdeII GATC 3 cut(s) 672, 825, 830
NlaIII CATG 6 cut(s) 49, 103, 495, 627, 707, 748
NlaIV GGNNCC 6 cut(s) 154, 322, 369, 729, 897, 942
NmuCI GTSAC 3 cut(s) 102, 352, 961
NsbI TGCGCA 1 cut(s) 64
PctI GAATGC 1 cut(s) 845
PfeI GAWTC 4 cut(s) 11, 228, 574, 923
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 4 cut(s) 43, 97, 511, 670
PshAI GACNNNNGTC 1 cut(s) 545
Psp124BI GAGCTC 2 cut(s) 202, 639
PspN4I GGNNCC 6 cut(s) 154, 322, 369, 729, 897, 942
PspOMI GGGCCC 1 cut(s) 367
PspPI GGNCC 3 cut(s) 367, 368, 728
PsuI RGATCY 1 cut(s) 830
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 332
SacI GAGCTC 2 cut(s) 202, 639
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 4 cut(s) 42, 96, 510, 669
Sau3AI GATC 3 cut(s) 672, 825, 830
Sau96I GGNCC 3 cut(s) 367, 368, 728
SduI GDGCHC 9 cut(s) 29, 202, 323, 346, 371, 435, 639, 874, 943
SetI ASST 6 cut(s) 202, 282, 359, 457, 514, 639
SfaNI GCATC 1 cut(s) 793
SmiMI CAYNNNNRTG 1 cut(s) 332
SsiI CCGC 2 cut(s) 668, 691
SstI GAGCTC 2 cut(s) 202, 639
StyI CCWWGG 3 cut(s) 45, 315, 796
TaaI ACNGT 3 cut(s) 157, 517, 862
TaqI TCGA 1 cut(s) 57
TauI GCSGC 1 cut(s) 671
TfiI GAWTC 4 cut(s) 11, 228, 574, 923
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 5 cut(s) 36, 351, 780, 826, 970
TseFI GTSAC 3 cut(s) 102, 352, 961
TseI GCWGC 3 cut(s) 41, 95, 509
Tsp45I GTSAC 3 cut(s) 102, 352, 961
TspDTI ATGAA 5 cut(s) 118, 166, 477, 692, 921
TspRI CASTG 5 cut(s) 36, 351, 780, 826, 970
Van91I CCANNNNNTGG 1 cut(s) 401
XapI RAATTY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.