RchiOBHm_Chr2g0170801

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000534
Physical Location & Seq
Reverse (-)
84607978 .. 84610898
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53829

Sequence Viewer

Length: 1059 bp
ATGGCACTTGAATCTCGTATATGGGGCTCAGTGCCTTTTGCTGCCATGGTGTTGGTCGAGTGCGCAGAAATTGGAGTGTCAACGATAAGTAAAGCAGCCATGTCAAGAGGGATGAGCCACTTTGTTTTCATCGTTTACTATAATGCACTCGGTACCGTCCTGCTTTCCCTTATTTCATCTTCCAAAGCTCCTTTGAATTGCAAACTCATTTGTAGATTCTTCCTTCTTGGCTTAATAGGGAGTTCAGGAAAAATTTTGTTCTTTGCTGGTGTCAAATACAGTTCACCTACTCTTTCAGCAGCACTGGCAAATCTTACCCCCATCTTCACTTTCTTGCTTGCCGTAGCTTTCAGGATGGAAAAGCTTGATTTGAGGCAACCAAGCGGTCAAGCCAAATCCTTGGGCACCATAATATCGGTGTGTGGGGCACTGATAGTGACCTTCTACAAGGGCCCTGCTGTTTTGATGGCTTCCTTACCACATTCTGGCTTCAAAAATCATCATATACATTCAGAGCACTCAGCGTGGGTTTTCGGAGGTCTTCTACTTGCAATTCAATGTATTGTGTCTTCATCATGGAATATCGCTCAGGCAGCTACGGTCAAGGATTATCCAGAAGAAATGACCATAGTCTTCTTCTACACCCTCTTTTTGACGATTCAATGCTCAGTTATCTCACTGTTTGTGGAATGGAAAAATCCAAGTGCATGGAAATTGGAGCTCGGAATTGAGATGGTTGCCATTCTCTATGCGGCGATTTTTGTGAGTGTGTTCCGCATTGGTGTTCATGTTTGGTGCTTGCACAAGAAGGGGCCTGTTTATGTAGCCATGTTCAAGCCATTGGGAATTGCTATTGCAGTGGCAATGGTTGTTATTTTCCTCGGTGATGCTCTTTATCTTGGCAGTGTGATCGGATCTGTTGTAATTGCGTTCGGATTTTATACGGTGATATGGGCACAAATAAAAGAAAAGAAGATGGTGCCTGATAATGAAGTGCAAAGATTAGAATCATCCATCCAAAGGGCTCCTCTTTTGCCAACCGATGTCACTGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

352

Amino Acids

38.42

Weight (kDa)

9.0

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 25 - 147 6.4e-09 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 64
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 3 cut(s) 152, 404, 979
AccB7I CCANNNNNTGG 1 cut(s) 485
AciI CCGC 3 cut(s) 384, 752, 775
AclWI GGATC 1 cut(s) 922
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 485, 1020
AgsI TTSAA 6 cut(s) 11, 196, 493, 557, 662, 835
AluBI AGCT 5 cut(s) 188, 347, 364, 596, 721
AluI AGCT 5 cut(s) 188, 347, 364, 596, 721
Alw21I GWGCWC 2 cut(s) 519, 723
AlwI GGATC 1 cut(s) 922
AoxI GGCC 2 cut(s) 451, 812
ApaI GGGCCC 1 cut(s) 455
ApeKI GCWGC 4 cut(s) 41, 95, 299, 593
ApoI RAATTY 1 cut(s) 252
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 451, 452, 812
AsuHPI GGTGA 3 cut(s) 276, 896, 958
BaeGI GKGCMC 4 cut(s) 407, 430, 455, 958
BanI GGYRCC 3 cut(s) 152, 404, 979
BanII GRGCYC 4 cut(s) 29, 455, 723, 1027
BarI GAAGNNNNNNTAC 2 cut(s) 553, 585
BbsI GAAGAC 3 cut(s) 533, 561, 625
Bbv12I GWGCWC 2 cut(s) 519, 723
BbvI GCAGC 4 cut(s) 28, 107, 311, 605
BccI CCATC 6 cut(s) 329, 349, 460, 727, 970, 1022
BceAI ACGGC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 892, 926
BisI GCNGC 5 cut(s) 42, 96, 300, 594, 753
BlsI GCNGC 5 cut(s) 43, 97, 301, 595, 754
BmgT120I GGNCC 3 cut(s) 451, 452, 812
BmiI GGNNCC 6 cut(s) 154, 406, 453, 813, 981, 1026
BmsI GCATC 1 cut(s) 877
BoxI GACNNNNGTC 1 cut(s) 629
BpiI GAAGAC 3 cut(s) 533, 561, 625
Bpu10I CCTNAGC 1 cut(s) 588
BsaBI GATNNNNATC 1 cut(s) 1006
BsaJI CCNNGG 3 cut(s) 45, 399, 880
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 1020
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 870
Bse8I GATNNNNATC 1 cut(s) 1006
BseDI CCNNGG 3 cut(s) 45, 399, 880
BseGI GGATG 4 cut(s) 117, 360, 1010, 1014
BseJI GATNNNNATC 1 cut(s) 1006
BseLI CCNNNNNNNGG 2 cut(s) 485, 1020
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 4 cut(s) 42, 534, 602, 681
BseNI ACTGG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 1017
BseSI GKGCMC 4 cut(s) 407, 430, 455, 958
BseXI GCAGC 4 cut(s) 28, 107, 311, 605
BshFI GGCC 2 cut(s) 453, 814
BshNI GGYRCC 3 cut(s) 152, 404, 979
BsiHKAI GWGCWC 2 cut(s) 519, 723
BslI CCNNNNNNNGG 2 cut(s) 485, 1020
BsnI GGCC 2 cut(s) 453, 814
Bsp120I GGGCCC 1 cut(s) 451
Bsp1286I GDGCHC 8 cut(s) 29, 407, 430, 455, 519, 723, 958, 1027
Bsp143I GATC 2 cut(s) 909, 914
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 3 cut(s) 384, 752, 775
BspANI GGCC 2 cut(s) 453, 814
BspCNI CTCAG 4 cut(s) 41, 533, 601, 680
BspLI GGNNCC 6 cut(s) 154, 406, 453, 813, 981, 1026
BspPI GGATC 1 cut(s) 922
BspT107I GGYRCC 3 cut(s) 152, 404, 979
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 45, 399, 880
BssMI GATC 2 cut(s) 909, 914
BssT1I CCWWGG 2 cut(s) 45, 399
Bst4CI ACNGT 5 cut(s) 157, 281, 601, 681, 946
BstC8I GCNNGC 2 cut(s) 339, 800
BstDEI CTNAG 4 cut(s) 28, 520, 588, 667
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 4 cut(s) 117, 360, 1010, 1014
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 912, 917
BstMBI GATC 2 cut(s) 909, 914
BstMWI GCNNNNNNNGC 2 cut(s) 305, 593
BstPAI GACNNNNGTC 1 cut(s) 629
BstSLI GKGCMC 4 cut(s) 407, 430, 455, 958
BstV1I GCAGC 4 cut(s) 28, 107, 311, 605
BstV2I GAAGAC 3 cut(s) 533, 561, 625
BstX2I RGATCY 1 cut(s) 914
BstXI CCANNNNNNTGG 3 cut(s) 52, 400, 708
BstYI RGATCY 1 cut(s) 914
BsuRI GGCC 2 cut(s) 453, 814
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 4 cut(s) 117, 360, 1010, 1014
BtsI GCAGTG 2 cut(s) 864, 910
BtsIMutI CAGTG 7 cut(s) 36, 302, 428, 677, 864, 910, 1047
Cac8I GCNNGC 2 cut(s) 339, 800
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 451, 452, 812
Csp6I GTAC 1 cut(s) 153
CviAII CATG 6 cut(s) 46, 100, 576, 708, 788, 829
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 4 cut(s) 28, 520, 588, 667
DpnI GATC 2 cut(s) 911, 916
DpnII GATC 2 cut(s) 909, 914
Ecl136II GAGCTC 1 cut(s) 721
Eco130I CCWWGG 2 cut(s) 45, 399
Eco24I GRGCYC 4 cut(s) 29, 455, 723, 1027
Eco53kI GAGCTC 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 721
EcoO109I RGGNCCY 3 cut(s) 451, 452, 812
EcoT14I CCWWGG 2 cut(s) 45, 399
EcoT38I GRGCYC 4 cut(s) 29, 455, 723, 1027
ErhI CCWWGG 2 cut(s) 45, 399
FaeI CATG 6 cut(s) 49, 103, 579, 711, 791, 832
FatI CATG 6 cut(s) 45, 99, 575, 707, 787, 828
Fnu4HI GCNGC 5 cut(s) 42, 96, 300, 594, 753
FokI GGATG 4 cut(s) 124, 367, 997, 1001
FriOI GRGCYC 4 cut(s) 29, 455, 723, 1027
Fsp4HI GCNGC 5 cut(s) 42, 96, 300, 594, 753
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 1 cut(s) 64
GluI GCNGC 5 cut(s) 42, 96, 300, 594, 753
HaeIII GGCC 2 cut(s) 453, 814
HhaI GCGC 1 cut(s) 65
Hin1II CATG 6 cut(s) 49, 103, 579, 711, 791, 832
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 4 cut(s) 11, 216, 658, 1007
HphI GGTGA 3 cut(s) 276, 896, 958
Hpy166II GTNNAC 3 cut(s) 81, 136, 284
Hpy188I TCNGA 5 cut(s) 514, 536, 725, 914, 935
Hpy188III TCNNGA 4 cut(s) 105, 246, 352, 614
Hpy8I GTNNAC 3 cut(s) 81, 136, 284
HpyAV CCTTC 3 cut(s) 233, 451, 802
HpyCH4III ACNGT 5 cut(s) 157, 281, 601, 681, 946
HpyCH4V TGCA 7 cut(s) 146, 201, 551, 707, 802, 857, 997
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 593
HpyF3I CTNAG 4 cut(s) 28, 520, 588, 667
Hsp92II CATG 6 cut(s) 49, 103, 579, 711, 791, 832
HspAI GCGC 1 cut(s) 63
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 2 cut(s) 909, 914
LmnI GCTCC 3 cut(s) 193, 718, 1030
Lsp1109I GCAGC 4 cut(s) 28, 107, 311, 605
LweI GCATC 1 cut(s) 877
MaeIII GTNAC 2 cut(s) 436, 1045
MalI GATC 2 cut(s) 911, 916
MboI GATC 2 cut(s) 909, 914
MboII GAAGA 9 cut(s) 171, 211, 316, 533, 561, 625, 628, 629, 985
MflI RGATCY 1 cut(s) 914
MhlI GDGCHC 8 cut(s) 29, 407, 430, 455, 519, 723, 958, 1027
MluCI AATT 8 cut(s) 69, 196, 252, 552, 713, 726, 846, 924
MnlI CCTC 6 cut(s) 101, 366, 530, 656, 890, 1038
MseI TTAA 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 305, 593
NcoI CCATGG 1 cut(s) 45
NdeII GATC 2 cut(s) 909, 914
NlaIII CATG 6 cut(s) 49, 103, 579, 711, 791, 832
NlaIV GGNNCC 6 cut(s) 154, 406, 453, 813, 981, 1026
NmuCI GTSAC 2 cut(s) 436, 1045
NsbI TGCGCA 1 cut(s) 64
PfeI GAWTC 4 cut(s) 11, 216, 658, 1007
PflMI CCANNNNNTGG 1 cut(s) 485
PkrI GCNGC 5 cut(s) 43, 97, 301, 595, 754
PshAI GACNNNNGTC 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 723
PspN4I GGNNCC 6 cut(s) 154, 406, 453, 813, 981, 1026
PspOMI GGGCCC 1 cut(s) 451
PspPI GGNCC 3 cut(s) 451, 452, 812
PsuI RGATCY 1 cut(s) 914
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SacI GAGCTC 1 cut(s) 723
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 5 cut(s) 42, 96, 300, 594, 753
Sau3AI GATC 2 cut(s) 909, 914
Sau96I GGNCC 3 cut(s) 451, 452, 812
SduI GDGCHC 8 cut(s) 29, 407, 430, 455, 519, 723, 958, 1027
SetI ASST 8 cut(s) 190, 289, 349, 366, 443, 541, 598, 723
SfaNI GCATC 1 cut(s) 877
Sse9I AATT 8 cut(s) 69, 196, 252, 552, 713, 726, 846, 924
SsiI CCGC 3 cut(s) 384, 752, 775
SstI GAGCTC 1 cut(s) 723
StyI CCWWGG 2 cut(s) 45, 399
TaaI ACNGT 5 cut(s) 157, 281, 601, 681, 946
TaqI TCGA 1 cut(s) 57
TasI AATT 8 cut(s) 69, 196, 252, 552, 713, 726, 846, 924
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 4 cut(s) 11, 216, 658, 1007
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 7 cut(s) 36, 309, 435, 684, 864, 910, 1054
TseFI GTSAC 2 cut(s) 436, 1045
TseI GCWGC 4 cut(s) 41, 95, 299, 593
Tsp45I GTSAC 2 cut(s) 436, 1045
TspDTI ATGAA 5 cut(s) 118, 165, 561, 776, 1005
TspRI CASTG 7 cut(s) 36, 309, 435, 684, 864, 910, 1054
Van91I CCANNNNNTGG 1 cut(s) 485
XapI RAATTY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.