pycom111g02940

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000534
Physical Location & Seq
Forward (+)
1762391 .. 1764562
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02940.4

Sequence Viewer

Length: 447 bp
ATGTCGAGAGGAATGAGCACATCAGTTTTTACCGTTTACTACTTTACCCTAACGCCCTTGCTACCATCCTTCTCCTTCCTTTTTTCATTTTACAGTGACCGCTGTATTCTTCTACACCTTCTTCATGACAAGCCAATGACAATATTTTTTCTAATTGTAGAAACGAATCCAAACGCTTGGGTACTAAGGTCTGACGTTGAGATGATCGCCATTGTCTGCTCAGTGAGAAGAACCTTAAACTTGATTCTTGAGAATGTTTGTAATTCGGCCATATTCGGGAGTGTGTTTCGAGTTGGTGTTCGTTTGTGGTGCTTGCACGAAAAGGGACCTATCTTTGTATCCATGTTCAAGCCCTTGGGAGTTGCCGTTGCAGCATTCATGGTGGTCATCTTCCTAGGCGACGTGCTTTACCTTGGCAGGTGGGTGATGCAGGCCATTCACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

149

Amino Acids

16.89

Weight (kDa)

8.82

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 408
Acc36I ACCTGC 1 cut(s) 408
AciI CCGC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 267
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 403
Alw21I GWGCWC 1 cut(s) 20
AoxI GGCC 2 cut(s) 267, 432
ApeKI GCWGC 1 cut(s) 371
AspA2I CCTAGG 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 326
AvrII CCTAGG 1 cut(s) 394
BaeI ACNNNNGTAYC 2 cut(s) 173, 206
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 383
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 350
BciVI GTATCC 1 cut(s) 349
BfaI CTAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 408
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 1 cut(s) 372
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 354, 394, 412
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 354, 394, 412
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 383
BshFI GGCC 2 cut(s) 269, 434
BsiHKAI GWGCWC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 2 cut(s) 269, 434
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 100
BspANI GGCC 2 cut(s) 269, 434
BspCNI CTCAG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 408
BssECI CCNNGG 3 cut(s) 354, 394, 412
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 3 cut(s) 354, 394, 412
Bst4CI ACNGT 2 cut(s) 34, 95
BstC8I GCNNGC 2 cut(s) 314, 432
BstDEI CTNAG 2 cut(s) 185, 220
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 383
BstXI CCANNNNNNTGG 1 cut(s) 177
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 269, 434
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 100, 228
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 314, 432
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 182
CviAII CATG 3 cut(s) 125, 343, 379
CviJI RGCY 4 cut(s) 133, 269, 352, 434
CviKI_1 RGCY 4 cut(s) 133, 269, 352, 434
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 185, 220
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 267
Eco130I CCWWGG 3 cut(s) 354, 394, 412
Eco47I GGWCC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 326
EcoT14I CCWWGG 3 cut(s) 354, 394, 412
ErhI CCWWGG 3 cut(s) 354, 394, 412
FaeI CATG 3 cut(s) 128, 346, 382
FaiI YATR 4 cut(s) 126, 272, 344, 380
FaqI GGGAC 1 cut(s) 339
FatI CATG 3 cut(s) 124, 342, 378
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 395
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 2 cut(s) 269, 434
Hin1II CATG 3 cut(s) 128, 346, 382
HinfI GANTC 2 cut(s) 166, 244
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 4 cut(s) 6, 125, 248, 277
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 79, 85, 128
HpyCH4III ACNGT 2 cut(s) 34, 95
HpyCH4IV ACGT 2 cut(s) 195, 402
HpyCH4V TGCA 3 cut(s) 316, 371, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 185, 220
HpySE526I ACGT 2 cut(s) 195, 402
Hsp92II CATG 3 cut(s) 128, 346, 382
Kzo9I GATC 1 cut(s) 204
LpnPI CCDG 2 cut(s) 403, 416
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 417
MaeI CTAG 1 cut(s) 395
MaeII ACGT 2 cut(s) 195, 402
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 4 cut(s) 101, 113, 240, 382
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 3 cut(s) 153, 262, 442
MseI TTAA 2 cut(s) 236, 445
MspA1I CMGCKG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 1 cut(s) 204
NlaIII CATG 3 cut(s) 128, 346, 382
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 95
PagI TCATGA 1 cut(s) 124
PaqCI CACCTGC 1 cut(s) 408
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 166, 244
PkrI GCNGC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 326
PspPPI RGGWCCY 1 cut(s) 326
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 236, 445
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 326
SduI GDGCHC 1 cut(s) 20
SetI ASST 8 cut(s) 120, 191, 198, 236, 331, 405, 414, 422
SfaNI GCATC 1 cut(s) 417
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 3 cut(s) 153, 262, 442
SsiI CCGC 1 cut(s) 100
SspI AATATT 1 cut(s) 144
SspMI CTAG 1 cut(s) 395
StyI CCWWGG 3 cut(s) 354, 394, 412
TaaI ACNGT 2 cut(s) 34, 95
TaiI ACGT 2 cut(s) 198, 405
TaqI TCGA 2 cut(s) 5, 289
TasI AATT 3 cut(s) 153, 262, 442
TfiI GAWTC 2 cut(s) 166, 244
Tru1I TTAA 2 cut(s) 236, 445
Tru9I TTAA 2 cut(s) 236, 445
TscAI CASTG 2 cut(s) 100, 228
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 75, 113, 367
TspRI CASTG 2 cut(s) 100, 228
VpaK11BI GGWCC 1 cut(s) 326
XmaJI CCTAGG 1 cut(s) 394
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.