Rmu_co8437261.1_g000001

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8437261.1
OG0000534
Physical Location & Seq
Forward (+)
1 .. 1063
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8437261.1_g000001.1.cds

Sequence Viewer

Length: 549 bp
cagtcaaagtgggtctttggaggtcttatgcttgcaatggcgagcgttttgaaggcatcatggaatattcttcagacatcaattgttaagaactatccatcaatgattaccgtactcttcttctacaccttctttgtgacaattcaatccacagtgttctctctatttttggaaagaaatccaaatgcttgggtacttaggcctgacattgagatgatctccattgtcttctcagctatcttcgggagtctgttccatattggtgttgaaacctggtgcttgcaccaaaagggacctatctttgtagccatgttcaggcccttgggagttgccattgctgcagtcatggtagttatcttccttggcgacgcacttcaccttggcagtgtgattggatctatcattattgcaattgggttttatgctatgatatgggcacaaatcaaagaaaatagcaccaacggtatagcaaatgaagtccaaagcttggcatcatccactcaaaagacccctcttttgcaatgcaaaacctcaggagaggatgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

182

Amino Acids

20.04

Weight (kDa)

7.99

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 487
AclWI GGATC 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 114, 195
AfiI CCNNNNNNNGG 2 cut(s) 315, 487
AgsI TTSAA 3 cut(s) 52, 146, 269
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 2 cut(s) 236, 486
AluI AGCT 2 cut(s) 236, 486
AlwI GGATC 1 cut(s) 403
AoxI GGCC 2 cut(s) 200, 317
ApeKI GCWGC 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 499, 531
AspS9I GGNCC 2 cut(s) 293, 318
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 293, 318
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 65, 500
BpiI GAAGAC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BsaJI CCNNGG 3 cut(s) 321, 361, 379
BsaXI ACNNNNNCTCC 1 cut(s) 528
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 487
Bse21I CCTNAGG 1 cut(s) 532
Bse3DI GCAATG 3 cut(s) 42, 333, 527
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 3 cut(s) 321, 361, 379
BseGI GGATG 2 cut(s) 494, 547
BseLI CCNNNNNNNGG 2 cut(s) 315, 487
BseMI GCAATG 3 cut(s) 42, 333, 527
BseMII CTCAG 2 cut(s) 246, 546
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 202, 319
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 315, 487
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 2 cut(s) 202, 319
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 2 cut(s) 216, 395
BspANI GGCC 2 cut(s) 202, 319
BspCNI CTCAG 2 cut(s) 245, 545
BspLI GGNNCC 1 cut(s) 294
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 1 cut(s) 403
BsrDI GCAATG 3 cut(s) 42, 333, 527
BssECI CCNNGG 3 cut(s) 321, 361, 379
BssMI GATC 2 cut(s) 216, 395
BssT1I CCWWGG 3 cut(s) 321, 361, 379
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 3 cut(s) 112, 154, 464
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 33, 43, 281
BstDEI CTNAG 3 cut(s) 197, 232, 532
BstF5I GGATG 2 cut(s) 494, 547
BstKTI GATC 2 cut(s) 219, 398
BstMBI GATC 2 cut(s) 216, 395
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 532
BsuRI GGCC 2 cut(s) 202, 319
BtsCI GGATG 2 cut(s) 494, 547
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 159, 391
Cac8I GCNNGC 3 cut(s) 33, 43, 281
Cfr13I GGNCC 2 cut(s) 293, 318
CseI GACGC 1 cut(s) 377
CsiI ACCWGGT 1 cut(s) 272
Csp6I GTAC 2 cut(s) 113, 194
CviAII CATG 3 cut(s) 60, 310, 346
CviJI RGCY 5 cut(s) 202, 236, 308, 319, 486
CviKI_1 RGCY 5 cut(s) 202, 236, 308, 319, 486
CviQI GTAC 2 cut(s) 113, 194
DdeI CTNAG 3 cut(s) 197, 232, 532
DpnI GATC 2 cut(s) 218, 397
DpnII GATC 2 cut(s) 216, 395
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 3 cut(s) 321, 361, 379
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 532
EcoO109I RGGNCCY 2 cut(s) 293, 318
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 3 cut(s) 321, 361, 379
ErhI CCWWGG 3 cut(s) 321, 361, 379
FaeI CATG 3 cut(s) 63, 313, 349
FaiI YATR 9 cut(s) 29, 61, 258, 311, 347, 423, 428, 433, 467
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 306
FatI CATG 3 cut(s) 59, 309, 345
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 2 cut(s) 202, 319
HgaI GACGC 1 cut(s) 377
Hin1II CATG 3 cut(s) 63, 313, 349
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 1 cut(s) 247
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 244, 534
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 2 cut(s) 46, 139
HpyCH4III ACNGT 3 cut(s) 112, 154, 464
HpyCH4V TGCA 6 cut(s) 35, 283, 341, 410, 520, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 3 cut(s) 197, 232, 532
Hsp92II CATG 3 cut(s) 63, 313, 349
Kzo9I GATC 2 cut(s) 216, 395
LpnPI CCDG 5 cut(s) 216, 259, 286, 301, 519
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 2 cut(s) 65, 500
MabI ACCWGGT 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 218, 397
MboI GATC 2 cut(s) 216, 395
MboII GAAGA 6 cut(s) 62, 109, 112, 220, 232, 349
MfeI CAATTG 2 cut(s) 81, 411
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 3 cut(s) 81, 141, 411
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 4 cut(s) 14, 522, 532, 541
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 2 cut(s) 212, 261
MspR9I CCNGG 1 cut(s) 274
MunI CAATTG 2 cut(s) 81, 411
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeII GATC 2 cut(s) 216, 395
NlaIII CATG 3 cut(s) 63, 313, 349
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 136
PceI AGGCCT 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 2 cut(s) 293, 318
PspPPI RGGWCCY 1 cut(s) 293
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 2 cut(s) 114, 195
RsaNI GTAC 2 cut(s) 113, 194
RseI CAYNNNNRTG 2 cut(s) 212, 261
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 2 cut(s) 216, 395
Sau96I GGNCC 2 cut(s) 293, 318
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 439
SetI ASST 8 cut(s) 25, 131, 238, 275, 298, 381, 488, 533
SexAI ACCWGGT 1 cut(s) 272
SfaNI GCATC 2 cut(s) 65, 500
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 2 cut(s) 212, 261
Sse9I AATT 3 cut(s) 81, 141, 411
SseBI AGGCCT 1 cut(s) 202
SspI AATATT 1 cut(s) 67
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 3 cut(s) 321, 361, 379
TaaI ACNGT 3 cut(s) 112, 154, 464
TasI AATT 3 cut(s) 81, 141, 411
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 159, 391
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 489
TspRI CASTG 2 cut(s) 159, 391
Van91I CCANNNNNTGG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.