RchiOBHm_Chr2g0170841

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000534
Physical Location & Seq
Reverse (-)
84629037 .. 84630160
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53833

Sequence Viewer

Length: 657 bp
ATGGTGCCTTGTACATGGGGTGATGTTCTACCTTTTGCAGCTATGATAATGATGGAAATCACAGATGTAGGTGCAGCAGCTATAAGCAAAGCAGCCATGTCAAAAGGGATGAGTGGTTATGTTTTTGTCAAAGAAGGTTCTCTTACTTTTTCACTCCTTGGTGGACAATTCCTTCTTGGCCTAATTGGGAGTTCAAGTTTGTTGTTAGCATATAATGGGATCAACTACAGCTTACCAACACTAGCTTCAGCTATAGGGAATCTTATACCAGTCTTTACATTCATGCTGGCAATTATTTTCAGGATGGAAAAGCTAGATTTGAGAAGATCAAGCGGTCGAGCCAAAGTGTTAGGGACTATAGTATCAGTATCCGGAGCATTTATAGTAATTTTATACAAGGGATCAGTAATCTTTTCACCATCCAACTCTCCTCACAAAAACTTCACGATAACCTCACAGCAAACAAAGTGGATCTTAGGAGGTCTTATGCTTGCAGTGGCATGCCTTTTGGCAGCAATATGGAACATTCTTCAGAAATCACTTGTTGAGAACTGTCCGTCAATGGTTACCATAGTCTTCTTCTACACCTTATTTATGACAATCCAATGCACAGTGTTCTCTTTGTTTGTGGAAAGGAATCGGAATGGTGGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

218

Amino Acids

23.54

Weight (kDa)

9.35

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccIII TCCGGA 1 cut(s) 371
AciI CCGC 1 cut(s) 333
AclWI GGATC 3 cut(s) 227, 409, 479
AcuI CTGAAG 2 cut(s) 231, 515
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
AluBI AGCT 6 cut(s) 41, 80, 231, 245, 251, 313
AluI AGCT 6 cut(s) 41, 80, 231, 245, 251, 313
AlwI GGATC 3 cut(s) 227, 409, 479
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 5 cut(s) 38, 74, 77, 92, 512
AsuHPI GGTGA 2 cut(s) 32, 408
BaeI ACNNNNGTAYC 2 cut(s) 345, 378
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 568
BbvI GCAGC 5 cut(s) 50, 86, 89, 104, 524
BccI CCATC 3 cut(s) 46, 298, 427
BciVI GTATCC 1 cut(s) 379
BfaI CTAG 2 cut(s) 242, 314
BfmI CTRYAG 3 cut(s) 226, 252, 357
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 5 cut(s) 39, 75, 78, 93, 513
BlsI GCNGC 5 cut(s) 40, 76, 79, 94, 514
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 114, 309, 419
BseJI GATNNNNATC 1 cut(s) 56
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 5 cut(s) 50, 86, 89, 104, 524
BsgI GTGCAG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 337
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 371
Bsp1407I TGTACA 1 cut(s) 11
Bsp143I GATC 4 cut(s) 219, 326, 401, 471
BspACI CCGC 1 cut(s) 333
BspANI GGCC 1 cut(s) 180
BspEI TCCGGA 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 227, 409, 479
BspT107I GGYRCC 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 11
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 4 cut(s) 219, 326, 401, 471
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 554, 613
BstAUI TGTACA 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 288, 492, 502
BstDEI CTNAG 1 cut(s) 475
BstEII GGTNACC 1 cut(s) 565
BstF5I GGATG 3 cut(s) 114, 309, 419
BstKTI GATC 4 cut(s) 222, 329, 404, 474
BstMBI GATC 4 cut(s) 219, 326, 401, 471
BstMCI CGRYCG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 504
BstPI GGTNACC 1 cut(s) 565
BstSFI CTRYAG 3 cut(s) 226, 252, 357
BstV1I GCAGC 5 cut(s) 50, 86, 89, 104, 524
BstV2I GAAGAC 1 cut(s) 568
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 3 cut(s) 114, 309, 419
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 501, 618
Cac8I GCNNGC 3 cut(s) 288, 492, 502
Csp6I GTAC 1 cut(s) 12
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 4 cut(s) 15, 97, 283, 501
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 475
DpnI GATC 4 cut(s) 221, 328, 403, 473
DpnII GATC 4 cut(s) 219, 326, 401, 471
Eco130I CCWWGG 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 231, 515
Eco91I GGTNACC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 4 cut(s) 18, 100, 286, 504
FalI AAGNNNNNCTT 4 cut(s) 126, 158, 458, 490
FaqI GGGAC 1 cut(s) 367
FatI CATG 4 cut(s) 14, 96, 282, 500
Fnu4HI GCNGC 5 cut(s) 39, 75, 78, 93, 513
FokI GGATG 3 cut(s) 121, 316, 406
Fsp4HI GCNGC 5 cut(s) 39, 75, 78, 93, 513
FspBI CTAG 2 cut(s) 242, 314
GluI GCNGC 5 cut(s) 39, 75, 78, 93, 513
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 372
Hin1II CATG 4 cut(s) 18, 100, 286, 504
HinfI GANTC 2 cut(s) 259, 637
HpaII CCGG 1 cut(s) 372
HphI GGTGA 2 cut(s) 32, 408
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 534, 642
Hpy188III TCNNGA 3 cut(s) 301, 372, 445
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 128, 182
HpyCH4III ACNGT 2 cut(s) 554, 613
HpyCH4V TGCA 4 cut(s) 38, 74, 494, 609
HpyF3I CTNAG 1 cut(s) 475
Hsp92II CATG 4 cut(s) 18, 100, 286, 504
Kpn2I TCCGGA 1 cut(s) 371
Kzo9I GATC 4 cut(s) 219, 326, 401, 471
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 4 cut(s) 272, 282, 286, 385
Lsp1109I GCAGC 5 cut(s) 50, 86, 89, 104, 524
MaeI CTAG 2 cut(s) 242, 314
MaeIII GTNAC 1 cut(s) 565
MalI GATC 4 cut(s) 221, 328, 403, 473
MboI GATC 4 cut(s) 219, 326, 401, 471
MboII GAAGA 4 cut(s) 336, 521, 568, 571
MflI RGATCY 1 cut(s) 471
MluCI AATT 4 cut(s) 167, 183, 291, 387
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 3 cut(s) 441, 463, 473
MroI TCCGGA 1 cut(s) 371
MseI TTAA 1 cut(s) 655
MspI CCGG 1 cut(s) 372
NdeII GATC 4 cut(s) 219, 326, 401, 471
NlaIII CATG 4 cut(s) 18, 100, 286, 504
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 504
PaeI GCATGC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 259, 637
PkrI GCNGC 5 cut(s) 40, 76, 79, 94, 514
PspEI GGTNACC 1 cut(s) 565
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 655
SatI GCNGC 5 cut(s) 39, 75, 78, 93, 513
Sau3AI GATC 4 cut(s) 219, 326, 401, 471
SfcI CTRYAG 3 cut(s) 226, 252, 357
SphI GCATGC 1 cut(s) 504
Sse9I AATT 4 cut(s) 167, 183, 291, 387
SsiI CCGC 1 cut(s) 333
SspMI CTAG 2 cut(s) 242, 314
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 554, 613
TaqI TCGA 1 cut(s) 337
TasI AATT 4 cut(s) 167, 183, 291, 387
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 2 cut(s) 259, 637
Tru1I TTAA 1 cut(s) 655
Tru9I TTAA 1 cut(s) 655
TscAI CASTG 2 cut(s) 501, 618
TseI GCWGC 5 cut(s) 38, 74, 77, 92, 512
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 546
TspRI CASTG 2 cut(s) 501, 618
XceI RCATGY 1 cut(s) 504
XspI CTAG 2 cut(s) 242, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.