Rh2BG635000

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000534
Physical Location & Seq
Reverse (-)
85630021 .. 85632209
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG635000.1

Sequence Viewer

Length: 912 bp
ATGATTGGGTACATATATATACTTGGGTTTTTTCTGTTCCATGATATAGAGCTATCTTCTGCTTCTAGAGAAAAAGTTTGTGTGTGCAGGAGTTCAAGCTTGTTATTGGCATATAGTGGCGTCAACTACAGCTCACCAACACTCGCTTCAGCTATGGCAAATCTTATACCAATCTTTACATTCATACTGGCAGTCATTTTCAGGATGGAAAAGCTAGATTTGAGGAGGTCAAGCTGCCAAGCCAAAGTGTTAGGGACTATAGTATCAGTATCTGGAGCATTTGTAGTAATTCTATACAAGGGATCAGTGATCTTTTCACCATCCAACTCTCCTGACCAGAACTTCATGATGATCTCACAGCAGTCAAAGTGGGTCTTTGGAGGTCTTATGCTGGCAATGGTGTGCCTTCTGAACGCAACATGGGGTATTCTTCAGACATCATTTGTTCAGAACTGTCCATCAATGATTACCATACTCTTCTTCTACAACTTCTTTGTCACAATCCAGTGCACAATATTCTCTCTAATTATGGAAAGGACTTGGAATGCTTGGGTAATAAGGCCTGACATTGAGATGATCTCCATTGTCTTCTCAGCTTTATTTGGGAGTTTGTTCCATGTTGGTGTTCAAACCTGGTGCTTGCACCAAAAGGGACCTATCTTTGTAGCCATGTTTAGGCCATTGGGAGTTGCCATTGCGGCAGTTATGGTAGTGGTCTTCCTCGGCGATGCACTTCACCTTGGCAGTGTCATTGGATCTTTCATTATTGCAGTTGGCTTTTATGCTATGATTTGGGCACAGATCAAAGAAAGGAGCACTACTCTTATGGAGAATGAAGTCAAAAGCTTGGCACCATCATCCACCCAAAAGACCCCTCTTCTGCAATGCAGAACCTCAGGAGAAGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

303

Amino Acids

33.6

Weight (kDa)

8.63

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 850
AciI CCGC 1 cut(s) 698
AclWI GGATC 2 cut(s) 310, 763
AcuI CTGAAG 2 cut(s) 132, 416
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 675
AgsI TTSAA 2 cut(s) 96, 629
AjnI CCWGG 1 cut(s) 632
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 8 cut(s) 52, 99, 132, 152, 214, 234, 596, 846
AluI AGCT 8 cut(s) 52, 99, 132, 152, 214, 234, 596, 846
Alw21I GWGCWC 2 cut(s) 512, 818
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 2 cut(s) 310, 763
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 2 cut(s) 560, 677
ApaLI GTGCAC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 126, 309, 728
AvaII GGWCC 1 cut(s) 653
AxyI CCTNAGG 1 cut(s) 895
BaeGI GKGCMC 2 cut(s) 512, 799
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 1 cut(s) 850
BbsI GAAGAC 2 cut(s) 580, 709
Bbv12I GWGCWC 2 cut(s) 512, 818
BbvI GCAGC 1 cut(s) 221
BccI CCATC 4 cut(s) 199, 328, 466, 862
BciT130I CCWGG 1 cut(s) 634
BfaI CTAG 2 cut(s) 66, 215
BfmI CTRYAG 2 cut(s) 127, 258
BglI GCCNNNNNGGC 1 cut(s) 698
BisI GCNGC 2 cut(s) 235, 699
BlsI GCNGC 2 cut(s) 236, 700
Bme1390I CCNGG 1 cut(s) 634
Bme18I GGWCC 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 2 cut(s) 654, 852
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 1 cut(s) 718
BpiI GAAGAC 2 cut(s) 580, 709
BplI GAGNNNNNCTC 4 cut(s) 563, 595, 805, 837
BpmI CTGGAG 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 721, 739
BsaXI ACNNNNNCTCC 3 cut(s) 267, 297, 891
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse1I ACTGG 2 cut(s) 192, 505
Bse21I CCTNAGG 1 cut(s) 895
Bse3DI GCAATG 3 cut(s) 402, 693, 890
BseBI CCWGG 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 721, 739
BseGI GGATG 3 cut(s) 210, 320, 857
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 3 cut(s) 402, 693, 890
BseMII CTCAG 2 cut(s) 606, 909
BseNI ACTGG 2 cut(s) 192, 505
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 2 cut(s) 512, 799
BseXI GCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 106
BshFI GGCC 2 cut(s) 562, 679
BshNI GGYRCC 1 cut(s) 850
BsiHKAI GWGCWC 2 cut(s) 512, 818
BslFI GGGAC 2 cut(s) 268, 666
BslI CCNNNNNNNGG 1 cut(s) 675
BsmFI GGGAC 2 cut(s) 268, 666
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 2 cut(s) 562, 679
Bsp1286I GDGCHC 3 cut(s) 512, 799, 818
Bsp143I GATC 6 cut(s) 302, 309, 351, 576, 755, 801
BspACI CCGC 1 cut(s) 698
BspANI GGCC 2 cut(s) 562, 679
BspCNI CTCAG 2 cut(s) 605, 908
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 654, 852
BspPI GGATC 2 cut(s) 310, 763
BspT107I GGYRCC 1 cut(s) 850
BsrDI GCAATG 3 cut(s) 402, 693, 890
BsrI ACTGG 2 cut(s) 192, 505
BssECI CCNNGG 2 cut(s) 721, 739
BssMI GATC 6 cut(s) 302, 309, 351, 576, 755, 801
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 2 cut(s) 482, 882
BstACI GRCGYC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 393, 641
BstDEI CTNAG 2 cut(s) 592, 895
BstF5I GGATG 3 cut(s) 210, 320, 857
BstKTI GATC 6 cut(s) 305, 312, 354, 579, 758, 804
BstMBI GATC 6 cut(s) 302, 309, 351, 576, 755, 801
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 632
BstSFI CTRYAG 2 cut(s) 127, 258
BstSLI GKGCMC 2 cut(s) 512, 799
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 580, 709
BstX2I RGATCY 1 cut(s) 755
BstYI RGATCY 1 cut(s) 755
Bsu36I CCTNAGG 1 cut(s) 895
BsuRI GGCC 2 cut(s) 562, 679
BtgZI GCGATG 1 cut(s) 741
BtsCI GGATG 3 cut(s) 210, 320, 857
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 3 cut(s) 312, 512, 751
Cac8I GCNNGC 2 cut(s) 393, 641
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 653
CseI GACGC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 632
Csp6I GTAC 1 cut(s) 10
CviAII CATG 5 cut(s) 41, 346, 420, 617, 670
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 592, 895
DpnI GATC 6 cut(s) 304, 311, 353, 578, 757, 803
DpnII GATC 6 cut(s) 302, 309, 351, 576, 755, 801
Eam1104I CTCTTC 2 cut(s) 482, 882
EarI CTCTTC 2 cut(s) 482, 882
Eco130I CCWWGG 1 cut(s) 739
Eco147I AGGCCT 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 2 cut(s) 132, 416
Eco81I CCTNAGG 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 5 cut(s) 44, 349, 423, 620, 673
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 2 cut(s) 268, 666
FatI CATG 5 cut(s) 40, 345, 419, 616, 669
Fnu4HI GCNGC 2 cut(s) 235, 699
FokI GGATG 3 cut(s) 217, 307, 844
Fsp4HI GCNGC 2 cut(s) 235, 699
FspBI CTAG 2 cut(s) 66, 215
GluI GCNGC 2 cut(s) 235, 699
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 2 cut(s) 562, 679
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 5 cut(s) 44, 349, 423, 620, 673
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 97, 844
HphI GGTGA 3 cut(s) 126, 309, 728
Hpy166II GTNNAC 2 cut(s) 124, 510
Hpy188I TCNGA 3 cut(s) 411, 435, 450
Hpy188III TCNNGA 6 cut(s) 66, 202, 273, 332, 346, 897
Hpy8I GTNNAC 2 cut(s) 124, 510
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 7 cut(s) 87, 510, 643, 731, 770, 883, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 2 cut(s) 592, 895
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 5 cut(s) 44, 349, 423, 620, 673
Kzo9I GATC 6 cut(s) 302, 309, 351, 576, 755, 801
LmnI GCTCC 2 cut(s) 275, 813
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 718
MabI ACCWGGT 1 cut(s) 632
MaeI CTAG 2 cut(s) 66, 215
MaeIII GTNAC 1 cut(s) 496
MalI GATC 6 cut(s) 304, 311, 353, 578, 757, 803
MboI GATC 6 cut(s) 302, 309, 351, 576, 755, 801
MboII GAAGA 7 cut(s) 48, 422, 469, 472, 580, 709, 869
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 3 cut(s) 512, 799, 818
MluCI AATT 2 cut(s) 288, 525
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 6 cut(s) 216, 219, 374, 731, 885, 904
MslI CAYNNNNRTG 2 cut(s) 572, 621
MspR9I CCNGG 1 cut(s) 634
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 1 cut(s) 698
NdeII GATC 6 cut(s) 302, 309, 351, 576, 755, 801
NlaIII CATG 5 cut(s) 44, 349, 423, 620, 673
NlaIV GGNNCC 2 cut(s) 654, 852
NmeAIII GCCGAG 1 cut(s) 702
NmuCI GTSAC 1 cut(s) 496
PagI TCATGA 1 cut(s) 345
PceI AGGCCT 1 cut(s) 562
PctI GAATGC 1 cut(s) 550
PkrI GCNGC 2 cut(s) 236, 700
PpuMI RGGWCCY 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 2 cut(s) 654, 852
PspPI GGNCC 1 cut(s) 653
PspPPI RGGWCCY 1 cut(s) 653
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 755
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 572, 621
SatI GCNGC 2 cut(s) 235, 699
Sau3AI GATC 6 cut(s) 302, 309, 351, 576, 755, 801
Sau96I GGNCC 1 cut(s) 653
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 3 cut(s) 512, 799, 818
SexAI ACCWGGT 1 cut(s) 632
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 2 cut(s) 127, 258
SinI GGWCC 1 cut(s) 653
SmiMI CAYNNNNRTG 2 cut(s) 572, 621
Sse9I AATT 2 cut(s) 288, 525
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 1 cut(s) 698
SspI AATATT 1 cut(s) 516
SspMI CTAG 2 cut(s) 66, 215
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 455
TasI AATT 2 cut(s) 288, 525
TauI GCSGC 1 cut(s) 701
TscAI CASTG 3 cut(s) 312, 512, 751
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 4 cut(s) 172, 334, 751, 849
TspRI CASTG 3 cut(s) 312, 512, 751
VneI GTGCAC 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 653
XbaI TCTAGA 1 cut(s) 65
XspI CTAG 2 cut(s) 66, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.