Rh2CG603600

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000534
Physical Location & Seq
Reverse (-)
77908728 .. 77910419
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG603600.1

Sequence Viewer

Length: 1074 bp
ATGGATCAGCCTTGTAAATGGGGCATACTGCTACCTTTTGCAGCCATGGTTACAGTTCAGTTTACCGATGTGGGGATATCAACTATAAGCAAAGCAGCTATGTCAAGAGGAATGAGCAGTTATGTTTTGATTGTCTACTCTAATGCCCTTGCTACCCTCCTTCTCCTTCCCTCTTTCATTTTACAAAAGAAGCAGGTTTCTCTTACCTTTTCGTTCCTTTCTGGACTCTTCCTCCTAGGCCTAATCGGGAGTTCAAGTATATTATTGGCATATAATGGCATCAACTACAGCTCACCAACACTTTCTTCAGCTATGGCAAATCTTATACCAATCTACACGTTCATGTTGGCAATCATTTTCAGGCTGGAAAAACTAGATTTGAGGAGATCAAGCAGTCAAGCTAAAGTGTTGGGCACTATAGTATCAGTCTCTGGAGCATTTATAATAATCCTATATAAGGGCTTAGTAATCTTAAAGCCTTCATCGCCATCCAACTTCTTCATGATCTCACATCAGTCAAACTCAAGGTGGGTCTTTGGAGGTCTTATGCTGGCAATGTCCTGCCTTTTGTCTGCAATTTGGAACATTGTTCAGGCATCCATTGTTAAAAACTGTCCATCAAAGGTGACAGTGGTCTTCTTCTACACGTTCTTTATGACAATCCAATGCACAATATTTTCTCTGATTGTCGAAAGGAATCCGAATACTTGGGTTATAAGACCTGGCATCGAGATGATCTCCATTGTCTGCTCAGCTATAATGGGAAATGTGTTCCATGTTGGTGTTCATACTTGGTGCTTGCACCAAAAGGGACCTGTCTTTGTAGCCATGTTCAGACCTTTGGGAGTTGCCATTGCGGCTGTCATGGTGGTCTTCTTCCTCGGCGATCCGCTTCATCTTGGCAGTGTGGTTGGATCTGTCATCATTGCCATTGGGTTTTATGCTATGATGTGGGCACAAATCAAAGAAAAGGGCAGTAATGTTGTGGAGAATGAAGTCCACAGCTTGGCATCAACAAACCAACACACCACCCCTCTTTTGCAATGCAGAAGCACAGAAGAAGAAAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

357

Amino Acids

39.1

Weight (kDa)

9.28

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 7 - 150 5.7e-08 EamA-like transporter family
EamA PF00892 179 - 316 1e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 443, 716
Acc36I ACCTGC 1 cut(s) 184
AccB7I CCANNNNNTGG 1 cut(s) 1006
AccI GTMKAC 1 cut(s) 135
AciI CCGC 2 cut(s) 857, 890
AclWI GGATC 3 cut(s) 12, 881, 922
AcuI CTGAAG 1 cut(s) 291
AfiI CCNNNNNNNGG 3 cut(s) 72, 457, 1006
AflIII ACRYGT 2 cut(s) 336, 645
AgsI TTSAA 1 cut(s) 255
AjnI CCWGG 1 cut(s) 721
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AluBI AGCT 6 cut(s) 98, 291, 311, 401, 755, 1005
AluI AGCT 6 cut(s) 98, 291, 311, 401, 755, 1005
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 3 cut(s) 12, 881, 922
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 41, 95
AspA2I CCTAGG 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 812
AsuHPI GGTGA 2 cut(s) 285, 637
AvaII GGWCC 1 cut(s) 812
AvrII CCTAGG 1 cut(s) 235
BaeGI GKGCMC 2 cut(s) 416, 958
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BbsI GAAGAC 2 cut(s) 628, 865
BbvI GCAGC 2 cut(s) 53, 107
BccI CCATC 2 cut(s) 496, 625
BciT130I CCWGG 1 cut(s) 723
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 2 cut(s) 236, 374
BfmI CTRYAG 2 cut(s) 286, 417
BfuAI ACCTGC 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 857
BisI GCNGC 3 cut(s) 42, 96, 858
BlnI CCTAGG 1 cut(s) 235
BlpI GCTNAGC 1 cut(s) 751
BlsI GCNGC 3 cut(s) 43, 97, 859
Bme1390I CCNGG 1 cut(s) 723
Bme18I GGWCC 1 cut(s) 812
BmgT120I GGNCC 1 cut(s) 812
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 1 cut(s) 723
BmsI GCATC 4 cut(s) 288, 605, 735, 1019
BoxI GACNNNNGTC 1 cut(s) 632
BpiI GAAGAC 2 cut(s) 628, 865
BplI GAGNNNNNCTC 2 cut(s) 722, 754
BpmI CTGGAG 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 751
BpuEI CTTGAG 1 cut(s) 508
BsaJI CCNNGG 3 cut(s) 45, 235, 880
BsaXI ACNNNNNCTCC 4 cut(s) 216, 241, 246, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 457, 1006
Bse3DI GCAATG 4 cut(s) 561, 852, 924, 1049
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 3 cut(s) 45, 235, 880
BseGI GGATG 2 cut(s) 488, 596
BseLI CCNNNNNNNGG 3 cut(s) 72, 457, 1006
BseMI GCAATG 4 cut(s) 561, 852, 924, 1049
BseMII CTCAG 1 cut(s) 765
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 2 cut(s) 416, 958
BseXI GCAGC 2 cut(s) 53, 107
BshFI GGCC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 3 cut(s) 72, 457, 1006
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 416, 958
Bsp143I GATC 6 cut(s) 4, 386, 504, 735, 886, 914
Bsp1720I GCTNAGC 1 cut(s) 751
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 857, 890
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 764
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 813
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 3 cut(s) 12, 881, 922
BsrDI GCAATG 4 cut(s) 561, 852, 924, 1049
BssECI CCNNGG 3 cut(s) 45, 235, 880
BssMI GATC 6 cut(s) 4, 386, 504, 735, 886, 914
BssT1I CCWWGG 2 cut(s) 45, 235
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 3 cut(s) 55, 614, 631
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 552, 800
BstDEI CTNAG 2 cut(s) 463, 751
BstDSI CCRYGG 1 cut(s) 45
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 488, 596
BstKTI GATC 6 cut(s) 7, 389, 507, 738, 889, 917
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 6 cut(s) 4, 386, 504, 735, 886, 914
BstMWI GCNNNNNNNGC 2 cut(s) 484, 857
BstNI CCWGG 1 cut(s) 723
BstPAI GACNNNNGTC 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 721
BstSFI CTRYAG 2 cut(s) 286, 417
BstSLI GKGCMC 2 cut(s) 416, 958
BstV1I GCAGC 2 cut(s) 53, 107
BstV2I GAAGAC 2 cut(s) 628, 865
BstX2I RGATCY 1 cut(s) 914
BstYI RGATCY 1 cut(s) 914
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 488, 596
BtsI GCAGTG 1 cut(s) 910
BtsIMutI CAGTG 2 cut(s) 636, 910
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 552, 800
CaiI CAGNNNCTG 1 cut(s) 431
CciI TCATGA 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 812
CviAII CATG 6 cut(s) 46, 343, 502, 776, 829, 865
DdeI CTNAG 2 cut(s) 463, 751
DpnI GATC 6 cut(s) 6, 388, 506, 737, 888, 916
DpnII GATC 6 cut(s) 4, 386, 504, 735, 886, 914
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 45, 235
Eco147I AGGCCT 1 cut(s) 240
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 812
Eco57I CTGAAG 1 cut(s) 291
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 721
EcoRV GATATC 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 45, 235
ErhI CCWWGG 2 cut(s) 45, 235
FaeI CATG 6 cut(s) 49, 346, 505, 779, 832, 868
FaqI GGGAC 1 cut(s) 825
FatI CATG 6 cut(s) 45, 342, 501, 775, 828, 864
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 42, 96, 858
FokI GGATG 2 cut(s) 475, 583
Fsp4HI GCNGC 3 cut(s) 42, 96, 858
FspBI CTAG 2 cut(s) 236, 374
GluI GCNGC 3 cut(s) 42, 96, 858
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 1 cut(s) 240
Hin1II CATG 6 cut(s) 49, 346, 505, 779, 832, 868
HinfI GANTC 2 cut(s) 225, 697
HphI GGTGA 2 cut(s) 285, 637
Hpy166II GTNNAC 3 cut(s) 63, 136, 1000
Hpy188I TCNGA 3 cut(s) 684, 702, 836
Hpy188III TCNNGA 6 cut(s) 105, 222, 247, 432, 502, 730
Hpy8I GTNNAC 3 cut(s) 63, 136, 1000
HpyAV CCTTC 3 cut(s) 170, 176, 489
HpyCH4III ACNGT 3 cut(s) 55, 614, 631
HpyCH4IV ACGT 2 cut(s) 338, 647
HpyCH4V TGCA 6 cut(s) 41, 575, 669, 802, 1042, 1047
HpyF10VI GCNNNNNNNGC 2 cut(s) 484, 857
HpyF3I CTNAG 2 cut(s) 463, 751
HpySE526I ACGT 2 cut(s) 338, 647
Hsp92II CATG 6 cut(s) 49, 346, 505, 779, 832, 868
Kzo9I GATC 6 cut(s) 4, 386, 504, 735, 886, 914
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 2 cut(s) 53, 107
LweI GCATC 4 cut(s) 288, 605, 735, 1019
MaeI CTAG 2 cut(s) 236, 374
MaeII ACGT 2 cut(s) 338, 647
MaeIII GTNAC 2 cut(s) 49, 625
MalI GATC 6 cut(s) 6, 388, 506, 737, 888, 916
MboI GATC 6 cut(s) 4, 386, 504, 735, 886, 914
MboII GAAGA 9 cut(s) 220, 297, 490, 628, 631, 865, 868, 1070, 1073
MflI RGATCY 1 cut(s) 914
MhlI GDGCHC 2 cut(s) 416, 958
MluCI AATT 1 cut(s) 576
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 2 cut(s) 516, 892
MnlI CCTC 8 cut(s) 101, 167, 181, 242, 375, 533, 890, 1044
MseI TTAA 2 cut(s) 473, 606
MslI CAYNNNNRTG 3 cut(s) 341, 731, 780
MspR9I CCNGG 1 cut(s) 723
MvaI CCWGG 1 cut(s) 723
MwoI GCNNNNNNNGC 2 cut(s) 484, 857
NcoI CCATGG 1 cut(s) 45
NdeII GATC 6 cut(s) 4, 386, 504, 735, 886, 914
NlaIII CATG 6 cut(s) 49, 346, 505, 779, 832, 868
NlaIV GGNNCC 1 cut(s) 813
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 625
PagI TCATGA 1 cut(s) 501
PceI AGGCCT 1 cut(s) 240
PfeI GAWTC 1 cut(s) 697
PflMI CCANNNNNTGG 1 cut(s) 1006
PkrI GCNGC 3 cut(s) 43, 97, 859
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 812
PshAI GACNNNNGTC 1 cut(s) 632
PsiI TTATAA 2 cut(s) 443, 716
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 1 cut(s) 812
PspPPI RGGWCCY 1 cut(s) 812
PstNI CAGNNNCTG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 914
RseI CAYNNNNRTG 3 cut(s) 341, 731, 780
SaqAI TTAA 2 cut(s) 473, 606
SatI GCNGC 3 cut(s) 42, 96, 858
Sau3AI GATC 6 cut(s) 4, 386, 504, 735, 886, 914
Sau96I GGNCC 1 cut(s) 812
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 723
SduI GDGCHC 2 cut(s) 416, 958
SfaNI GCATC 4 cut(s) 288, 605, 735, 1019
SfcI CTRYAG 2 cut(s) 286, 417
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 3 cut(s) 341, 731, 780
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 1 cut(s) 576
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 2 cut(s) 857, 890
SspI AATATT 1 cut(s) 675
SspMI CTAG 2 cut(s) 236, 374
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 721
StyI CCWWGG 2 cut(s) 45, 235
TaaI ACNGT 3 cut(s) 55, 614, 631
TaiI ACGT 2 cut(s) 341, 650
TaqI TCGA 2 cut(s) 690, 729
TasI AATT 1 cut(s) 576
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 2 cut(s) 473, 606
Tru9I TTAA 2 cut(s) 473, 606
TscAI CASTG 2 cut(s) 636, 910
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 2 cut(s) 41, 95
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 7 cut(s) 166, 331, 471, 490, 776, 884, 1008
TspRI CASTG 2 cut(s) 636, 910
Van91I CCANNNNNTGG 1 cut(s) 1006
VpaK11BI GGWCC 1 cut(s) 812
XagI CCTNNNNNAGG 1 cut(s) 455
XmaJI CCTAGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 236, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.