Rroxscaffold_1G00030380

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000534
Physical Location & Seq
Forward (+)
39969732 .. 39969980
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030380.1

Sequence Viewer

Length: 249 bp
ATGCTCGGTTATCTCACTATTTGTGGAATGGAAAAAAATCCAAGTGCATGGAAATTGGAGCTCGGAATTGAGATGGTTGCCATTCTCTATGCGGCGATCTTTGTGAGTGTGTTCCGCATTGGTGTTCATGTTTGGTGCTTGCACAAGAAGGGGCCTGTTTATGTAGCCATGTTCAAGCCATTGGGAATTGCTATTGCAGTGGCAATGGTTGTTATTTTCCTTGGTGATGCTCTTTATCTTGGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

82

Amino Acids

9.0

Weight (kDa)

7.79

Isoelectric Point (pI)

20.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 115
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 63
AoxI GGCC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 236
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 1 cut(s) 67
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 210
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 63
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 2 cut(s) 92, 115
BspANI GGCC 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 48
BsuRI GGCC 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 152
CviAII CATG 3 cut(s) 48, 128, 169
CviJI RGCY 4 cut(s) 61, 154, 167, 178
CviKI_1 RGCY 4 cut(s) 61, 154, 167, 178
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 3 cut(s) 51, 131, 172
FaiI YATR 5 cut(s) 49, 90, 129, 162, 170
FatI CATG 3 cut(s) 47, 127, 168
Fnu4HI GCNGC 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 3 cut(s) 51, 131, 172
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 47, 142, 197
Hsp92II CATG 3 cut(s) 51, 131, 172
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 168
LweI GCATC 1 cut(s) 217
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 3 cut(s) 53, 66, 186
NdeII GATC 1 cut(s) 96
NlaIII CATG 3 cut(s) 51, 131, 172
NlaIV GGNNCC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 63
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 63
SetI ASST 1 cut(s) 63
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 3 cut(s) 53, 66, 186
SsiI CCGC 2 cut(s) 92, 115
SstI GAGCTC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 220
TasI AATT 3 cut(s) 53, 66, 186
TauI GCSGC 1 cut(s) 95
TscAI CASTG 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.