FvH4_6g50420

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000534
Physical Location & Seq
Reverse (-)
37521305 .. 37523336
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50420.t10

Sequence Viewer

Length: 1065 bp
ATGGTGACCTGTACATGGAGTGATGTGCTACCTTTTGCAGCTATGGTAATGGTGCAGTTCACAGACATAGGACAATCAACTATTAACAAAGCAGCCATGTCAAAAGGAGTGAGCAGTTATGTTTTAGTGGCTTACTCGAATGCGCTTGGTACCATCTTTCTTCTTCCTTGTTTCATCCTACTAAATAAGGTTTCTCTTACCTTCTCACTCCTTGGTGGGCAATTCCTTCTGGGCATAATTGGGAGTTCGAGTTTGTTATTAGCATATAATGGCGTCAACTACAGCTCACCAACACTTGCTTCAGCTATGGCAAATCTTATACCGATCTTTACTTTCATACTGGCAGTTATTTTCAGGATGGAAAAGCTAGATTTGAGGAGGTCAAGCTGCCAAGCCAAAGTGTTAGGGACTATTGTATCAGTATCTGGAGCATTTGTAATAATTCTATACAAGGGATCAGTGATCTTTTCACCATCCAACTCTCCTGATCAGAACTTCATGATGATCTCACAGCAGTTAAAATGGGGGTTGGGAGGTCTTATGCTGGCAATGGTGTGCCTTCTGAATGCAACATGGGGCATTCTTCAGACAGAAATGGTTAAGAACTGTCCATCTATGATTACCATACTCTTCTTCTACAACTTTTTTGTCACAATCCAGTGCACAATATTCTCTCTATTTATGGAAAGGAATCGGAATGCTTGGATAATAAGGCCTGACATTGAGATGGTCTCCATTGTCTTCTCAGCTTTATTTGGGAGTCTGTTCCATGTTGGTGTTCAAACCTGGTGCTTGCACCAAAAGGGACCTATCTTTGTAGCCATGTTTAGGCCCTTGGGAGTTGCCATTGCTGCAGTCATGGTAGTGATCTTCCTCGGCGAAGCACTTCACCTTGGCAGTGTCATTGGATCTATCATTATTGCAGTTGGCTTCTATGCTATGATGTGGGCACAAATCAAAGAAAAGAACACTACTCTTATGAAGGATGAAGTCCAAAGCTTGGCACCATCATCCACCCAAAAGACCCCTCTTTTGCAATGCAAAACTTCAGGAGAAGATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

355

Amino Acids

38.74

Weight (kDa)

8.89

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 76 - 201 3.2e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000534)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g50400 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50410 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420 FvH4_6g50420
malus_domestica MD09G1036400.v1.1 MD09G1036600.v1.1 MD17G1038100.v1.1 MD17G1038200.v1.1
prunus_persica Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G280900_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1 Prupe.3G281000_v2.0.a1
pyrus_communis pycom111g02920 pycom111g02930 pycom111g02940 pycom111g02950 pycom16g07600 pycom17g03430 pycom17g03440
rosa_chinensis RchiOBHm_Chr2g0170801 RchiOBHm_Chr2g0170811 RchiOBHm_Chr2g0170821 RchiOBHm_Chr2g0170831 RchiOBHm_Chr2g0170841
rosa_laevigata RLG00000021981 RLG00000021983 RLG00000021984 RLG00000021985
rosa_multiflora Rmu_co8418849.1_g000001 Rmu_co8437261.1_g000001 Rmu_sc0008393.1_g000003
rosa_roxburghii Rroxscaffold_1G00030380 Rroxscaffold_2G00081040 Rroxscaffold_2G00081050 Rroxscaffold_2G00081060
rosa_rugosa Rorug02G0551300 Rorug02G0551400 Rorug02G0551700 Rorug02G0551800
rosa_samantha Rh2AG624300 Rh2BG634700 Rh2BG634800 Rh2BG634900 Rh2BG635000 Rh2CG603500 Rh2CG603600 Rh2CG603700 Rh2CG603800
rosa_wichuraiana Rw0G017070 Rw2G051700 Rw2G051710 Rw2G051720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 149
AccB1I GGYRCC 2 cut(s) 149, 1003
AccB7I CCANNNNNTGG 1 cut(s) 1000
AclWI GGATC 2 cut(s) 463, 916
AcuI CTGAAG 3 cut(s) 285, 569, 1032
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 2 cut(s) 13, 151
AfiI CCNNNNNNNGG 3 cut(s) 15, 828, 1000
AgsI TTSAA 1 cut(s) 782
AjnI CCWGG 1 cut(s) 785
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
AluBI AGCT 7 cut(s) 41, 285, 305, 367, 387, 749, 999
AluI AGCT 7 cut(s) 41, 285, 305, 367, 387, 749, 999
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 1 cut(s) 736
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 2 cut(s) 463, 916
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 2 cut(s) 713, 830
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 4 cut(s) 38, 92, 387, 851
ArsI GACNNNNNNTTYG 2 cut(s) 1015, 1047
Asp700I GAANNNNTTC 1 cut(s) 885
Asp718I GGTACC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 806, 831
AsuHPI GGTGA 4 cut(s) 16, 279, 462, 881
AvaII GGWCC 1 cut(s) 806
BaeGI GKGCMC 2 cut(s) 665, 952
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BanI GGYRCC 2 cut(s) 149, 1003
BbsI GAAGAC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 665
BbvI GCAGC 4 cut(s) 50, 104, 374, 838
BccI CCATC 6 cut(s) 161, 352, 481, 619, 721, 1015
BciT130I CCWGG 1 cut(s) 787
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 736
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 2 cut(s) 280, 852
BisI GCNGC 4 cut(s) 39, 93, 388, 852
BlsI GCNGC 4 cut(s) 40, 94, 389, 853
Bme1390I CCNGG 1 cut(s) 787
Bme18I GGWCC 1 cut(s) 806
BmgT120I GGNCC 2 cut(s) 806, 831
BmiI GGNNCC 3 cut(s) 151, 807, 1005
BmrFI CCNGG 1 cut(s) 787
BpiI GAAGAC 1 cut(s) 733
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpmI CTGGAG 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 4 cut(s) 211, 834, 874, 892
BsaXI ACNNNNNCTCC 5 cut(s) 235, 265, 420, 450, 1044
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 828, 1000
Bse1I ACTGG 2 cut(s) 345, 658
Bse3DI GCAATG 3 cut(s) 555, 846, 1043
BseBI CCWGG 1 cut(s) 787
BseDI CCNNGG 4 cut(s) 211, 834, 874, 892
BseGI GGATG 5 cut(s) 174, 363, 473, 991, 1010
BseLI CCNNNNNNNGG 3 cut(s) 15, 828, 1000
BseMI GCAATG 3 cut(s) 555, 846, 1043
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 2 cut(s) 345, 658
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 2 cut(s) 665, 952
BseXI GCAGC 4 cut(s) 50, 104, 374, 838
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 2 cut(s) 715, 832
BshNI GGYRCC 2 cut(s) 149, 1003
BsiHKAI GWGCWC 1 cut(s) 665
BslFI GGGAC 2 cut(s) 421, 819
BslI CCNNNNNNNGG 3 cut(s) 15, 828, 1000
BsmAI GTCTC 1 cut(s) 736
BsmFI GGGAC 2 cut(s) 421, 819
BsmI GAATGC 4 cut(s) 145, 571, 579, 703
BsnI GGCC 2 cut(s) 715, 832
Bso31I GGTCTC 1 cut(s) 736
Bsp1286I GDGCHC 2 cut(s) 665, 952
Bsp1407I TGTACA 1 cut(s) 11
Bsp143I GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
BspANI GGCC 2 cut(s) 715, 832
BspCNI CTCAG 1 cut(s) 758
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 151, 807, 1005
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 2 cut(s) 463, 916
BspT107I GGYRCC 2 cut(s) 149, 1003
BspTNI GGTCTC 1 cut(s) 736
BsrDI GCAATG 3 cut(s) 555, 846, 1043
BsrGI TGTACA 1 cut(s) 11
BsrI ACTGG 2 cut(s) 345, 658
BssECI CCNNGG 4 cut(s) 211, 834, 874, 892
BssMI GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 3 cut(s) 211, 834, 892
Bst2UI CCWGG 1 cut(s) 787
Bst4CI ACNGT 1 cut(s) 608
Bst6I CTCTTC 1 cut(s) 635
BstACI GRCGYC 1 cut(s) 273
BstAUI TGTACA 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 546, 794
BstDEI CTNAG 1 cut(s) 745
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 5 cut(s) 174, 363, 473, 991, 1010
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 7 cut(s) 327, 458, 465, 490, 507, 870, 911
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstNI CCWGG 1 cut(s) 787
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 785
BstSFI CTRYAG 2 cut(s) 280, 852
BstSLI GKGCMC 2 cut(s) 665, 952
BstV1I GCAGC 4 cut(s) 50, 104, 374, 838
BstV2I GAAGAC 1 cut(s) 733
BstX2I RGATCY 1 cut(s) 908
BstYI RGATCY 1 cut(s) 908
BsuRI GGCC 2 cut(s) 715, 832
BtsCI GGATG 5 cut(s) 174, 363, 473, 991, 1010
BtsI GCAGTG 1 cut(s) 904
BtsIMutI CAGTG 3 cut(s) 465, 665, 904
Cac8I GCNNGC 2 cut(s) 546, 794
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 1 cut(s) 498
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 806, 831
CseI GACGC 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 785
Csp6I GTAC 2 cut(s) 12, 150
CviAII CATG 7 cut(s) 15, 97, 499, 573, 770, 823, 859
CviQI GTAC 2 cut(s) 12, 150
DdeI CTNAG 1 cut(s) 745
DpnI GATC 7 cut(s) 326, 457, 464, 489, 506, 869, 910
DpnII GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
Eam1104I CTCTTC 1 cut(s) 635
EarI CTCTTC 1 cut(s) 635
Eco130I CCWWGG 3 cut(s) 211, 834, 892
Eco147I AGGCCT 1 cut(s) 715
Eco31I GGTCTC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 806
Eco57I CTGAAG 3 cut(s) 285, 569, 1032
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 2 cut(s) 806, 831
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 785
EcoT14I CCWWGG 3 cut(s) 211, 834, 892
ErhI CCWWGG 3 cut(s) 211, 834, 892
FaeI CATG 7 cut(s) 18, 100, 502, 576, 773, 826, 862
FaqI GGGAC 2 cut(s) 421, 819
FatI CATG 7 cut(s) 14, 96, 498, 572, 769, 822, 858
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 4 cut(s) 39, 93, 388, 852
FokI GGATG 5 cut(s) 161, 370, 460, 997, 998
Fsp4HI GCNGC 4 cut(s) 39, 93, 388, 852
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 144
GluI GCNGC 4 cut(s) 39, 93, 388, 852
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 715, 832
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 7 cut(s) 18, 100, 502, 576, 773, 826, 862
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 997
HinfI GANTC 2 cut(s) 691, 760
HphI GGTGA 4 cut(s) 16, 279, 462, 881
Hpy166II GTNNAC 3 cut(s) 60, 277, 663
Hpy188I TCNGA 4 cut(s) 492, 564, 588, 696
Hpy188III TCNNGA 5 cut(s) 355, 426, 485, 499, 1050
Hpy8I GTNNAC 3 cut(s) 60, 277, 663
HpyAV CCTTC 4 cut(s) 211, 236, 569, 976
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4V TGCA 9 cut(s) 38, 55, 569, 663, 796, 854, 923, 1036, 1041
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 1 cut(s) 745
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 7 cut(s) 18, 100, 502, 576, 773, 826, 862
HspAI GCGC 1 cut(s) 143
KpnI GGTACC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 4 cut(s) 50, 104, 374, 838
MabI ACCWGGT 1 cut(s) 785
MaeI CTAG 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 4, 649
MalI GATC 7 cut(s) 326, 457, 464, 489, 506, 869, 910
MboI GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
MboII GAAGA 7 cut(s) 152, 155, 575, 622, 625, 733, 862
MflI RGATCY 1 cut(s) 908
MhlI GDGCHC 2 cut(s) 665, 952
MluCI AATT 3 cut(s) 221, 237, 441
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 5 cut(s) 369, 372, 527, 884, 1038
MroXI GAANNNNTTC 1 cut(s) 885
MseI TTAA 3 cut(s) 84, 518, 600
MslI CAYNNNNRTG 3 cut(s) 725, 774, 863
MspR9I CCNGG 1 cut(s) 787
Mva1269I GAATGC 4 cut(s) 145, 571, 579, 703
MvaI CCWGG 1 cut(s) 787
MwoI GCNNNNNNNGC 1 cut(s) 851
NdeII GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
NlaIII CATG 7 cut(s) 18, 100, 502, 576, 773, 826, 862
NlaIV GGNNCC 3 cut(s) 151, 807, 1005
NmeAIII GCCGAG 1 cut(s) 855
NmuCI GTSAC 2 cut(s) 4, 649
PagI TCATGA 1 cut(s) 498
PceI AGGCCT 1 cut(s) 715
PctI GAATGC 4 cut(s) 145, 571, 579, 703
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 1 cut(s) 691
PflMI CCANNNNNTGG 1 cut(s) 1000
PkrI GCNGC 4 cut(s) 40, 94, 389, 853
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 785
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 785
PspN4I GGNNCC 3 cut(s) 151, 807, 1005
PspPI GGNCC 2 cut(s) 806, 831
PspPPI RGGWCCY 1 cut(s) 806
PstI CTGCAG 1 cut(s) 856
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 1 cut(s) 908
RsaI GTAC 2 cut(s) 13, 151
RsaNI GTAC 2 cut(s) 12, 150
RseI CAYNNNNRTG 3 cut(s) 725, 774, 863
SaqAI TTAA 3 cut(s) 84, 518, 600
SatI GCNGC 4 cut(s) 39, 93, 388, 852
Sau3AI GATC 7 cut(s) 324, 455, 462, 487, 504, 867, 908
Sau96I GGNCC 2 cut(s) 806, 831
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 1 cut(s) 787
SduI GDGCHC 2 cut(s) 665, 952
SexAI ACCWGGT 1 cut(s) 785
SfcI CTRYAG 2 cut(s) 280, 852
SinI GGWCC 1 cut(s) 806
SmiMI CAYNNNNRTG 3 cut(s) 725, 774, 863
Sse9I AATT 3 cut(s) 221, 237, 441
SseBI AGGCCT 1 cut(s) 715
SspI AATATT 1 cut(s) 669
SspMI CTAG 1 cut(s) 368
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 1 cut(s) 785
StyI CCWWGG 3 cut(s) 211, 834, 892
TaaI ACNGT 1 cut(s) 608
TaqI TCGA 2 cut(s) 137, 248
TasI AATT 3 cut(s) 221, 237, 441
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 691
Tru1I TTAA 3 cut(s) 84, 518, 600
Tru9I TTAA 3 cut(s) 84, 518, 600
TscAI CASTG 3 cut(s) 465, 665, 904
TseFI GTSAC 2 cut(s) 4, 649
TseI GCWGC 4 cut(s) 38, 92, 387, 851
Tsp45I GTSAC 2 cut(s) 4, 649
TspDTI ATGAA 5 cut(s) 163, 325, 487, 995, 1002
TspRI CASTG 3 cut(s) 465, 665, 904
Van91I CCANNNNNTGG 1 cut(s) 1000
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 806
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.